NO08G03870, NO08G03870 (gene) Nannochloropsis oceanica

Overview
NameNO08G03870
Unique NameNO08G03870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1537
Alignment locationchr8:1092136..1093672 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1092136..1093672 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO08G03870 vs. NCBI_GenBank
Match: EWM26867.1 (hypothetical protein Naga_100097g14 [Nannochloropsis gaditana])

HSP 1 Score: 194.9 bits (494), Expect = 3.800e-46
Identity = 109/207 (52.66%), Postives = 145/207 (70.05%), Query Frame = 0 
Query:  109 VVIDMKVAGATREQVEAVAALVQYIANMPFHVANVSKINVTVEWRGTVVEGGASPTRSLRALPTIPVVHEEDIWELVNDKDKNKGK----KQCSLNVGDTANVTTITIHGLYGSAQSIKQVEDFLSFLSSGIINIWTGTEHLPAFNFVCASEVRMSNEAPSMQFQVMNAEEDDKRKRTGPNAAAIAVPVVFGVVLLGAVGFVLVKKF 312
            V ID++VAGAT EQ+EAVA LVQ+IA M F  AN S INVTVEWRGTVVE  +S T   R L ++      ++  L + + +  GK    K+C L+VGD+ NVTTITIHGL+G    ++Q+E FL+ +SSGII +    +H+P F FVC SEVRMSNEAPS++FQ M+ +E +K  +   N  AI +PVVFG+ L+GAVGF+L++KF
Sbjct:   59 VQIDLQVAGATEEQIEAVAGLVQFIAGMSFPGANRSDINVTVEWRGTVVEMDSSQTPLPRRLRSV-----GEVRALPSSRRETSGKDNENKRCKLSVGDSVNVTTITIHGLHGETY-VRQIESFLALISSGIIPV-VILDHIPVFKFVCDSEVRMSNEAPSLRFQPMDVQETEKTGKDKTNVTAIVIPVVFGIALVGAVGFLLLRKF 258
The following BLAST results are available for this feature:
BLAST of NO08G03870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26867.13.800e-4652.66hypothetical protein Naga_100097g14 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008612NSK008612Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03870.1NO08G03870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583193gene_3724Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100097g14gene3685Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03870.1NO08G03870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03870 ID=NO08G03870|Name=NO08G03870|organism=Nannochloropsis oceanica|type=gene|length=1537bp
TTTCCCCACCGTTCTGGTTTTATTTGTTCTTCTTGTTGCTAAAGAAGTGC
CTGCGCCCCTCGACCTTTGACCAATCATACTTAAGCAGAAGAATAAGCCA
GTGGCCGACAAGTCTTTCCGACATTTGCTTCAGCTCGGATCTCCTTCCTT
ACTCCCATATCCTTGGACAGCAATTTACTTACTTGCCCATCAAGCAATTT
ATCAAGCGATGCGAAACTACCTTGCAAAACTAATAAAACCACATTACACA
CTCGTATAGGACAGTAATCACCTTTTCTCTCTCTTCCATACCTGTAATGA
AGTTCTTCTCCGGCAGTAGCCCCATCTTGCTGGCTCTTTTTGGGATCCTA
GTCGTAAGCCATGGGCCGCGGGCTACGGATGCCGATGCCAGTCTCACAAC
CAAGGAGGGCTCAGACCCCTCCTTGGTACCTACCTTTGTGTCCATGAAAG
CTCCATCATTGATGACAAGCTCACCCACGAAAGCCCCATCGGTGGCGACA
AGCTCGCCCACAAAAGCCCCGTCGATGGCGACACGCTCGCCTACTGCTGC
CGCACCCGCTCCTCCAGCCGTGGCTGATGACCTTCTGCAAGAGGAGAAGG
ACGAGAATGAGAACCCCGTCGTGGTGATTGACATGAAAGTCGCTGGGGCC
ACCCGAGAACAAGTAGAGGCAGTGGCAGCCTTGGTCCAGTACATTGCTAA
TATGCCCTTCCATGTCGCAAACGTATCCAAGATCAATGTCACAGTGGAAT
GGAGGGGTACGGTCGTAGAGGGCGGTGCCAGCCCAACACGCTCCCTTCGT
GCATTACCCACGATACCGGTAGTCCATGAAGAGGATATCTGGGAGCTGGT
AAACGATAAGGATAAAAATAAAGGAAAGAAGCAATGCAGCCTAAATGTGG
GTGACACGGCCAACGTCACTACCATCACCATTCATGGCCTGTATGGCAGT
GCTCAGAGTATCAAACAAGTGGAAGACTTCCTGTCCTTCCTGTCTTCGGG
AATCATTAACATCTGGACGGGGACGGAACATCTCCCGGCATTCAATTTTG
TGTGTGCGTCCGAGGTGCGCATGAGCAATGAAGCTCCCTCCATGCAATTT
CAGGTCATGAATGCAGAGGAGGATGACAAGAGGAAAAGGACGGGTCCTAA
TGCAGCGGCTATTGCAGTGCCTGTTGTGTTTGGTGTCGTGCTGTTAGGAG
CAGTGGGTTTCGTTCTCGTTAAAAAGTTTGGAGTCGGTGTGTAGAGAAGT
GACTATTTGATTGTCGGGCGAGAAGAGAGCAATTGTGTGTACATGTATGA
ATGTGTGTGCATTCATGTGAACGAATAACGAGTGAAATAAAGAATGGAAG
TGTGCAAGCGAGAGAGCGTATGTGCATGTGCGTGAAGAAGGCAACCGGAC
AATTAACCGACAACAATCGTCACGGGAAAGGGTGTTCCGATAGGGGAAAA
GGGGCGTGTGAGTGGAACTCACATGTTACCAGAAAGCGAAAAGAGAAGCA
TAAGGACAAAGCAAGAGAAATGAGCCCCAAGAATACA
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protein sequence of NO08G03870.1

>NO08G03870.1-protein ID=NO08G03870.1-protein|Name=NO08G03870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MKFFSGSSPILLALFGILVVSHGPRATDADASLTTKEGSDPSLVPTFVSM
KAPSLMTSSPTKAPSVATSSPTKAPSMATRSPTAAAPAPPAVADDLLQEE
KDENENPVVVIDMKVAGATREQVEAVAALVQYIANMPFHVANVSKINVTV
EWRGTVVEGGASPTRSLRALPTIPVVHEEDIWELVNDKDKNKGKKQCSLN
VGDTANVTTITIHGLYGSAQSIKQVEDFLSFLSSGIINIWTGTEHLPAFN
FVCASEVRMSNEAPSMQFQVMNAEEDDKRKRTGPNAAAIAVPVVFGVVLL
GAVGFVLVKKFGVGV*
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Synonyms
Publications