NO08G03870.1, NO08G03870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03870.1
Unique NameNO08G03870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1537
Alignment locationchr8:1092136..1093672 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1092136..1093672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G03870.1 vs.
Match: EWM26867.1 (hypothetical protein Naga_100097g14 [Nannochloropsis gaditana])

HSP 1 Score: 211.8 bits (538), Expect = 3.000e-51
Identity = 129/264 (48.86%), Postives = 175/264 (66.29%), Query Frame = 0 
Query:   53 PSLMTSSPTKAPSVATSSPTKAPSMATRSPTAAAPAPPAVADDLLQE-EKDENENPVVVIDMKVAGATREQVEAVAALVQYIANMPFHVANVSKINVTVEWRGTVVEGGASPTRSLRALPTIPVVHEEDIWELVNDKDKNKGK----KQCSLNVGDTANVTTITIHGLYGSAQSIKQVEDFLSFLSSGIINIWTGTEHLPAFNFVCASEVRMSNEAPSMQFQVMNAEEDDKRKRTGPNAAAIAVPVVFGVVLLGAVGFVLVKKF 312
            PS+ T +PT  PS++TS P+ +P+   +     AP      +D   +   DE ENPVV ID++VAGAT EQ+EAVA LVQ+IA M F  AN S INVTVEWRGTVVE  +S T   R L ++      ++  L + + +  GK    K+C L+VGD+ NVTTITIHGL+G    ++Q+E FL+ +SSGII +    +H+P F FVC SEVRMSNEAPS++FQ M+ +E +K  +   N  AI +PVVFG+ L+GAVGF+L++KF
Sbjct:    2 PSISTRAPTTVPSISTSVPSISPTTLPKPVDENAPENNNNEEDPFDDMYDDEVENPVVQIDLQVAGATEEQIEAVAGLVQFIAGMSFPGANRSDINVTVEWRGTVVEMDSSQTPLPRRLRSV-----GEVRALPSSRRETSGKDNENKRCKLSVGDSVNVTTITIHGLHGETY-VRQIESFLALISSGIIPV-VILDHIPVFKFVCDSEVRMSNEAPSLRFQPMDVQETEKTGKDKTNVTAIVIPVVFGIALVGAVGFLLLRKF 258
The following BLAST results are available for this feature:
BLAST of NO08G03870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26867.13.000e-5148.86hypothetical protein Naga_100097g14 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03870NO08G03870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03870.1NO08G03870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03870.1.cds1NO08G03870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03870.1 ID=NO08G03870.1|Name=NO08G03870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1537bp
TTTCCCCACCGTTCTGGTTTTATTTGTTCTTCTTGTTGCTAAAGAAGTGC
CTGCGCCCCTCGACCTTTGACCAATCATACTTAAGCAGAAGAATAAGCCA
GTGGCCGACAAGTCTTTCCGACATTTGCTTCAGCTCGGATCTCCTTCCTT
ACTCCCATATCCTTGGACAGCAATTTACTTACTTGCCCATCAAGCAATTT
ATCAAGCGATGCGAAACTACCTTGCAAAACTAATAAAACCACATTACACA
CTCGTATAGGACAGTAATCACCTTTTCTCTCTCTTCCATACCTGTAATGA
AGTTCTTCTCCGGCAGTAGCCCCATCTTGCTGGCTCTTTTTGGGATCCTA
GTCGTAAGCCATGGGCCGCGGGCTACGGATGCCGATGCCAGTCTCACAAC
CAAGGAGGGCTCAGACCCCTCCTTGGTACCTACCTTTGTGTCCATGAAAG
CTCCATCATTGATGACAAGCTCACCCACGAAAGCCCCATCGGTGGCGACA
AGCTCGCCCACAAAAGCCCCGTCGATGGCGACACGCTCGCCTACTGCTGC
CGCACCCGCTCCTCCAGCCGTGGCTGATGACCTTCTGCAAGAGGAGAAGG
ACGAGAATGAGAACCCCGTCGTGGTGATTGACATGAAAGTCGCTGGGGCC
ACCCGAGAACAAGTAGAGGCAGTGGCAGCCTTGGTCCAGTACATTGCTAA
TATGCCCTTCCATGTCGCAAACGTATCCAAGATCAATGTCACAGTGGAAT
GGAGGGGTACGGTCGTAGAGGGCGGTGCCAGCCCAACACGCTCCCTTCGT
GCATTACCCACGATACCGGTAGTCCATGAAGAGGATATCTGGGAGCTGGT
AAACGATAAGGATAAAAATAAAGGAAAGAAGCAATGCAGCCTAAATGTGG
GTGACACGGCCAACGTCACTACCATCACCATTCATGGCCTGTATGGCAGT
GCTCAGAGTATCAAACAAGTGGAAGACTTCCTGTCCTTCCTGTCTTCGGG
AATCATTAACATCTGGACGGGGACGGAACATCTCCCGGCATTCAATTTTG
TGTGTGCGTCCGAGGTGCGCATGAGCAATGAAGCTCCCTCCATGCAATTT
CAGGTCATGAATGCAGAGGAGGATGACAAGAGGAAAAGGACGGGTCCTAA
TGCAGCGGCTATTGCAGTGCCTGTTGTGTTTGGTGTCGTGCTGTTAGGAG
CAGTGGGTTTCGTTCTCGTTAAAAAGTTTGGAGTCGGTGTGTAGAGAAGT
GACTATTTGATTGTCGGGCGAGAAGAGAGCAATTGTGTGTACATGTATGA
ATGTGTGTGCATTCATGTGAACGAATAACGAGTGAAATAAAGAATGGAAG
TGTGCAAGCGAGAGAGCGTATGTGCATGTGCGTGAAGAAGGCAACCGGAC
AATTAACCGACAACAATCGTCACGGGAAAGGGTGTTCCGATAGGGGAAAA
GGGGCGTGTGAGTGGAACTCACATGTTACCAGAAAGCGAAAAGAGAAGCA
TAAGGACAAAGCAAGAGAAATGAGCCCCAAGAATACA
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protein sequence of NO08G03870.1

>NO08G03870.1-protein ID=NO08G03870.1-protein|Name=NO08G03870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MKFFSGSSPILLALFGILVVSHGPRATDADASLTTKEGSDPSLVPTFVSM
KAPSLMTSSPTKAPSVATSSPTKAPSMATRSPTAAAPAPPAVADDLLQEE
KDENENPVVVIDMKVAGATREQVEAVAALVQYIANMPFHVANVSKINVTV
EWRGTVVEGGASPTRSLRALPTIPVVHEEDIWELVNDKDKNKGKKQCSLN
VGDTANVTTITIHGLYGSAQSIKQVEDFLSFLSSGIINIWTGTEHLPAFN
FVCASEVRMSNEAPSMQFQVMNAEEDDKRKRTGPNAAAIAVPVVFGVVLL
GAVGFVLVKKFGVGV*
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mRNA from alignment at chr8:1092136..1093672+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03870.1 ID=NO08G03870.1|Name=NO08G03870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1537bp|location=Sequence derived from alignment at chr8:1092136..1093672+ (Nannochloropsis oceanica)
TTTCCCCACCGTTCTGGTTTTATTTGTTCTTCTTGTTGCTAAAGAAGTGC
CTGCGCCCCTCGACCTTTGACCAATCATACTTAAGCAGAAGAATAAGCCA
GTGGCCGACAAGTCTTTCCGACATTTGCTTCAGCTCGGATCTCCTTCCTT
ACTCCCATATCCTTGGACAGCAATTTACTTACTTGCCCATCAAGCAATTT
ATCAAGCGATGCGAAACTACCTTGCAAAACTAATAAAACCACATTACACA
CTCGTATAGGACAGTAATCACCTTTTCTCTCTCTTCCATACCTGTAATGA
AGTTCTTCTCCGGCAGTAGCCCCATCTTGCTGGCTCTTTTTGGGATCCTA
GTCGTAAGCCATGGGCCGCGGGCTACGGATGCCGATGCCAGTCTCACAAC
CAAGGAGGGCTCAGACCCCTCCTTGGTACCTACCTTTGTGTCCATGAAAG
CTCCATCATTGATGACAAGCTCACCCACGAAAGCCCCATCGGTGGCGACA
AGCTCGCCCACAAAAGCCCCGTCGATGGCGACACGCTCGCCTACTGCTGC
CGCACCCGCTCCTCCAGCCGTGGCTGATGACCTTCTGCAAGAGGAGAAGG
ACGAGAATGAGAACCCCGTCGTGGTGATTGACATGAAAGTCGCTGGGGCC
ACCCGAGAACAAGTAGAGGCAGTGGCAGCCTTGGTCCAGTACATTGCTAA
TATGCCCTTCCATGTCGCAAACGTATCCAAGATCAATGTCACAGTGGAAT
GGAGGGGTACGGTCGTAGAGGGCGGTGCCAGCCCAACACGCTCCCTTCGT
GCATTACCCACGATACCGGTAGTCCATGAAGAGGATATCTGGGAGCTGGT
AAACGATAAGGATAAAAATAAAGGAAAGAAGCAATGCAGCCTAAATGTGG
GTGACACGGCCAACGTCACTACCATCACCATTCATGGCCTGTATGGCAGT
GCTCAGAGTATCAAACAAGTGGAAGACTTCCTGTCCTTCCTGTCTTCGGG
AATCATTAACATCTGGACGGGGACGGAACATCTCCCGGCATTCAATTTTG
TGTGTGCGTCCGAGGTGCGCATGAGCAATGAAGCTCCCTCCATGCAATTT
CAGGTCATGAATGCAGAGGAGGATGACAAGAGGAAAAGGACGGGTCCTAA
TGCAGCGGCTATTGCAGTGCCTGTTGTGTTTGGTGTCGTGCTGTTAGGAG
CAGTGGGTTTCGTTCTCGTTAAAAAGTTTGGAGTCGGTGTGTAGAGAAGT
GACTATTTGATTGTCGGGCGAGAAGAGAGCAATTGTGTGTACATGTATGA
ATGTGTGTGCATTCATGTGAACGAATAACGAGTGAAATAAAGAATGGAAG
TGTGCAAGCGAGAGAGCGTATGTGCATGTGCGTGAAGAAGGCAACCGGAC
AATTAACCGACAACAATCGTCACGGGAAAGGGTGTTCCGATAGGGGAAAA
GGGGCGTGTGAGTGGAACTCACATGTTACCAGAAAGCGAAAAGAGAAGCA
TAAGGACAAAGCAAGAGAAATGAGCCCCAAGAATACA
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Coding sequence (CDS) from alignment at chr8:1092136..1093672+

>NO08G03870.1 ID=NO08G03870.1|Name=NO08G03870.1|organism=Nannochloropsis oceanica|type=CDS|length=948bp|location=Sequence derived from alignment at chr8:1092136..1093672+ (Nannochloropsis oceanica)
ATGAAGTTCTTCTCCGGCAGTAGCCCCATCTTGCTGGCTCTTTTTGGGAT
CCTAGTCGTAAGCCATGGGCCGCGGGCTACGGATGCCGATGCCAGTCTCA
CAACCAAGGAGGGCTCAGACCCCTCCTTGGTACCTACCTTTGTGTCCATG
AAAGCTCCATCATTGATGACAAGCTCACCCACGAAAGCCCCATCGGTGGC
GACAAGCTCGCCCACAAAAGCCCCGTCGATGGCGACACGCTCGCCTACTG
CTGCCGCACCCGCTCCTCCAGCCGTGGCTGATGACCTTCTGCAAGAGGAG
AAGGACGAGAATGAGAACCCCGTCGTGGTGATTGACATGAAAGTCGCTGG
GGCCACCCGAGAACAAGTAGAGGCAGTGGCAGCCTTGGTCCAGTACATTG
CTAATATGCCCTTCCATGTCGCAAACGTATCCAAGATCAATGTCACAGTG
GAATGGAGGGGTACGGTCGTAGAGGGCGGTGCCAGCCCAACACGCTCCCT
TCGTGCATTACCCACGATACCGGTAGTCCATGAAGAGGATATCTGGGAGC
TGGTAAACGATAAGGATAAAAATAAAGGAAAGAAGCAATGCAGCCTAAAT
GTGGGTGACACGGCCAACGTCACTACCATCACCATTCATGGCCTGTATGG
CAGTGCTCAGAGTATCAAACAAGTGGAAGACTTCCTGTCCTTCCTGTCTT
CGGGAATCATTAACATCTGGACGGGGACGGAACATCTCCCGGCATTCAAT
TTTGTGTGTGCGTCCGAGGTGCGCATGAGCAATGAAGCTCCCTCCATGCA
ATTTCAGGTCATGAATGCAGAGGAGGATGACAAGAGGAAAAGGACGGGTC
CTAATGCAGCGGCTATTGCAGTGCCTGTTGTGTTTGGTGTCGTGCTGTTA
GGAGCAGTGGGTTTCGTTCTCGTTAAAAAGTTTGGAGTCGGTGTGTAG
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Synonyms
Publications