NO08G03840, NO08G03840 (gene) Nannochloropsis oceanica

Overview
NameNO08G03840
Unique NameNO08G03840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2063
Alignment locationchr8:1084912..1086974 -

Link to JBrowse

Properties
Property NameValue
DescriptionTetratricopeptide-like helical
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1084912..1086974 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
Homology
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BLAST of NO08G03840 vs. NCBI_GenBank
Match: EWM26860.1 (Tetratricopeptide-like helical [Nannochloropsis gaditana])

HSP 1 Score: 502.7 bits (1293), Expect = 1.800e-138
Identity = 335/656 (51.07%), Postives = 404/656 (61.59%), Query Frame = 0 
Query:    3 RCFSRGAFLLRRFNPT-----LLTPAPFSSLSRAPPVPAANWPKTPAVATDGLDAAVFTPLWESALDAHARGQYLEALRQAQASVEMAAKGKRGSLGREHALRMGYHLRGLALLQLGRVNEAVESLERAKVVAVRVSGAGAGDDAYTDLGGVLNDLGIAKALAGDGEGAQKNISRTLYMAQRAYRPDEDLISAACSNMAEVMRARGKNGEGEWED--EESVEMAERAARLTDKMERLSLMRPPADMEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAILSMARKGGVWDLPADLLNLHERSTRRRLILGRTLIRANRGEEGAYYIFRALQDARASGIRCNPILYAQCLAAVGSMHLISLLHHGSLTDLSHLAAAGCRDDNEMTWSAQGLLERAVGILAPCLGEAHPETVACKANLALLLPLGRGVEVLGEAMAEVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPSLHAALTRNKEGLQALLIAIGHSQAHVHCAVDLVAAKLQRRRKLEGGRGIRMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEVLWTVQGVVGVGLKGWRVKKEDKEEE 652
            RC S+  +LL R + T     L   A FSS SRAPP+P+A WP    + T+GLD+A+F  LWESALDAHARG+Y EAL +A+AS+E AA+G+ GSLGREHALRM +HL G+A +QLG V +AV+SLE+AK +A+RVSGAG GDDAYTDLGGVLNDLG+AKALAGD + AQKN+SRTLYMA+RAYRPDEDL+SAACSN+AEVM      G GE E   +E+VE+AE+AARLTDKMERLSL+R  +  EE                                +I + +   GVW LP +LL  HERSTRRRLILGR L RA+R EE AYY+F+ALQD+R SG+RCNPILYAQCLAAVG+MHL+SLL  G  TDLSHLAAAGCR+DNEMTW AQGLL RA+G+L P LG+ HPE VAC ANLAL  PL R   VL +AM                                               XXXXXXXXXXXXXXXX                                   +   L  N++ L  L+IA+G  +A  HCAV+LVAAK  +RR+ +G +   ++                           XXXXXXXXXXXXXX  +VLWT+QGVVGVGL+ W VK   + E+
Sbjct:    4 RCISKSRWLLPRISATSCLHALPKAATFSSFSRAPPLPSAQWPTQSEMPTNGLDSAIFKTLWESALDAHARGRYAEALAKAKASIETAAEGEHGSLGREHALRMAHHLTGVAYMQLGCVAQAVQSLEQAKDIAIRVSGAGGGDDAYTDLGGVLNDLGVAKALAGDKKAAQKNVSRTLYMARRAYRPDEDLVSAACSNLAEVMWMMDGEGGGEGEGIAQEAVELAEKAARLTDKMERLSLLRQSSAKEEAEPVGGEDTEATPGRKGGSYLPPMPASD---ASIQAKSASTGVWALPVELLAFHERSTRRRLILGRCLARAHREEEAAYYLFQALQDSRRSGLRCNPILYAQCLAAVGNMHLLSLLRRGLGTDLSHLAAAGCREDNEMTWDAQGLLVRALGVLEPVLGKEHPEVVACHANLALFQPLARAEAVLADAMRAA---------------------------------------GGEREXXXXXXXXXXXXXXXXSKKVDGHREHEAVRSEEEGSGAAQSPLSSPPVAREMMRVLEGNRQALNTLIIAVGRHKADRHCAVELVAAK--QRRRAKGRQTADISLASTEIPVGTDVGQGEGGCDGFGRGTTXXXXXXXXXXXXXXXXQVLWTLQGVVGVGLQAWDVKAGGRGEK 615
The following BLAST results are available for this feature:
BLAST of NO08G03840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26860.11.800e-13851.07Tetratricopeptide-like helical [Nannochloropsis ga... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008617NSK008617Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03840.1NO08G03840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583181gene_3720Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100097g17gene3688Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03840.1NO08G03840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03840 ID=NO08G03840|Name=NO08G03840|organism=Nannochloropsis oceanica|type=gene|length=2063bp
ACAGCCATGCACCGGTGCTTCAGTCGCGGGGCTTTTCTGCTCCGCCGGTT
CAATCCCACGTTGCTTACCCCTGCCCCCTTCTCTTCCCTCTCCCGGGCCC
CTCCCGTGCCCGCTGCGAATTGGCCCAAAACTCCAGCTGTGGCCACGGAT
GGGTTGGACGCCGCCGTCTTTACCCCTTTGTGGGAGAGTGCGCTTGATGC
CCATGCCCGGGGACAGTACCTTGAGGCCCTGAGACAGGCCCAGGCCAGCG
TGGAGATGGCCGCAAAGGGCAAACGAGGGAGCTTGGGACGTGAACACGCG
TTGCGGATGGGCTATCACTTGCGGGGCCTGGCCTTATTGCAACTAGGCCG
GGTGAATGAAGCGGTGGAAAGCCTCGAACGCGCCAAGGTTGTTGCGGTTC
GTGTGAGTGGTGCTGGGGCGGGCGACGACGCGTATACAGACCTTGGCGGA
GTCTTAAATGACTTGGGCATTGCCAAGGCGCTAGCAGGCGACGGGGAGGG
GGCACAGAAAAACATCAGTCGCACACTTTACATGGCTCAACGTGCCTACC
GTCCTGACGAGGACTTGATATCAGCGGCTTGTAGTAATATGGCGGAGGTC
ATGCGAGCAAGGGGGAAGAACGGGGAGGGGGAATGGGAGGATGAGGAGTC
AGTGGAGATGGCCGAAAGGGCGGCGCGCCTAACGGACAAGATGGAACGAT
TATCTTTGATGCGGCCACCAGCAGACATGGAGGAGGAAAATGAAACGGCT
GGTGCAAAAGGTGGAGGAGTGGGAGGGGCAAGCTGCCCCACCTCCTCCTC
TTCTTCCATTGCAGAAGAAGCAGAAGCAGAAGCCATTTTATCCATGGCCC
GCAAAGGAGGTGTCTGGGACCTTCCTGCAGACCTTCTCAATCTCCACGAA
CGGAGCACCCGTCGCCGCCTGATTTTAGGTCGTACCCTTATTCGTGCTAA
TCGAGGAGAAGAAGGCGCTTATTACATCTTCCGGGCCCTTCAAGACGCAC
GGGCGTCTGGCATCCGATGTAATCCCATTCTTTACGCACAGTGCTTGGCT
GCCGTGGGAAGCATGCATTTAATCTCCCTCCTTCACCACGGGTCGCTGAC
CGATCTATCGCACTTGGCAGCGGCGGGGTGTCGGGATGATAACGAAATGA
CATGGTCCGCGCAGGGGTTGCTCGAGAGGGCAGTAGGCATCTTGGCACCA
TGTCTGGGCGAGGCTCATCCGGAGACGGTGGCGTGTAAAGCGAATTTGGC
CTTGTTGCTTCCCTTGGGGAGGGGCGTGGAGGTTTTGGGGGAGGCGATGG
CGGAGGTGGAGAAGCAGCAGGTACAGCAGCAGCAGGAGGAGGAGCAACAG
CAGCAGCAGCCAGCAGAGGGGAAGGGCAAGAGTATGAGAGCTGGTGATGA
CGAGGAGGAGAGCACCAGCAGTACCAGCAACGCCATCGAAGGCGTAGGAT
ATCCTCCTCCTTCTTCTCCTTTAATTCGCACACCTGCACCATCATCACCA
CCAGAAACATCACAACCACCACCACCAGCGCCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACGATGCCCTCCCTCCATG
CGGCCCTAACTCGTAATAAAGAGGGACTCCAAGCTCTACTTATTGCGATA
GGACATAGTCAGGCCCATGTGCACTGTGCAGTCGATCTTGTGGCAGCGAA
GCTGCAGAGGAGGAGGAAGTTGGAGGGAGGGAGGGGAATAAGGATGACCA
CTGCAATCTCGTCGTCGTCGTCGGAGGCGGGAGGAGTAGGAGGGGGAAAA
GCAGTGGCAAGAGGTGTGAAAGAGGAGCTTGACTTCGAGGAGGGGGGAGG
AATGGATGACGAGCCACCGCCTAAGTTGGAAGTACTATGGACGGTCCAGG
GTGTGGTTGGTGTGGGTTTGAAAGGATGGAGGGTCAAGAAGGAGGACAAG
GAGGAGGAGGAGGAAGGGACGTGAGGAGGGGTGTGTGAGGGCAGGAGTAT
TAAGCCGTTATAAAGAGCGGCACGGTGGATGTAGTAAAGTATGTAAATAC
CTATCCAAAGGCA
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protein sequence of NO08G03840.1

>NO08G03840.1-protein ID=NO08G03840.1-protein|Name=NO08G03840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=656bp
MHRCFSRGAFLLRRFNPTLLTPAPFSSLSRAPPVPAANWPKTPAVATDGL
DAAVFTPLWESALDAHARGQYLEALRQAQASVEMAAKGKRGSLGREHALR
MGYHLRGLALLQLGRVNEAVESLERAKVVAVRVSGAGAGDDAYTDLGGVL
NDLGIAKALAGDGEGAQKNISRTLYMAQRAYRPDEDLISAACSNMAEVMR
ARGKNGEGEWEDEESVEMAERAARLTDKMERLSLMRPPADMEEENETAGA
KGGGVGGASCPTSSSSSIAEEAEAEAILSMARKGGVWDLPADLLNLHERS
TRRRLILGRTLIRANRGEEGAYYIFRALQDARASGIRCNPILYAQCLAAV
GSMHLISLLHHGSLTDLSHLAAAGCRDDNEMTWSAQGLLERAVGILAPCL
GEAHPETVACKANLALLLPLGRGVEVLGEAMAEVEKQQVQQQQEEEQQQQ
QPAEGKGKSMRAGDDEEESTSSTSNAIEGVGYPPPSSPLIRTPAPSSPPE
TSQPPPPAPAAAAAAAAAAAAAAAATMPSLHAALTRNKEGLQALLIAIGH
SQAHVHCAVDLVAAKLQRRRKLEGGRGIRMTTAISSSSSEAGGVGGGKAV
ARGVKEELDFEEGGGMDDEPPPKLEVLWTVQGVVGVGLKGWRVKKEDKEE
EEEGT*
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Synonyms
Publications