NO08G03840.1, NO08G03840.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G03840.1
Unique Name	NO08G03840.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2063
Alignment location	chr8:1084912..1086974 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:1084912..1086974 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO08G03840.1 vs.
Match: EWM26860.1 (Tetratricopeptide-like helical [Nannochloropsis gaditana])

HSP 1 Score: 539.7 bits (1389), Expect = 1.300e-149
Identity = 338/661 (51.13%), Postives = 424/661 (64.15%), Query Frame = 0

Query:    3 RCFSRGAFLLRRFNPT-----LLTPAPFSSLSRAPPVPAANWPKTPAVATDGLDAAVFTPLWESALDAHARGQYLEALRQAQASVEMAAKGKRGSLGREHALRMGYHLRGLALLQLGRVNEAVESLERAKVVAVRVSGAGAGDDAYTDLGGVLNDLGIAKALAGDGEGAQKNISRTLYMAQRAYRPDEDLISAACSNMAEVMRARGKNGEGEWED--EESVEMAERAARLTDKMERLSLMRPPADMEEENETAG----AKGGGVGGASCPTSSSSSIAEEAEAEAILSMARKGGVWDLPADLLNLHERSTRRRLILGRTLIRANRGEEGAYYIFRALQDARASGIRCNPILYAQCLAAVGSMHLISLLHHGSLTDLSHLAAAGCRDDNEMTWSAQGLLERAVGILAPCLGEAHPETVACKANLALLLPLGRGVEVLGEAMAEVEKQQVQQQQEEEQQQQQPAEGKGKSMRAGDDEEESTSSTSNAIEGVGYPPPSSPLIRTPAPSSPPETSQPPPPAPAAAAAAAAAAAAAAAATMPSLHAALTRNKEGLQALLIAIGHSQAHVHCAVDLVAAKLQRRRKLEGGRGIRM-TTAISSSSSEAGGVGGGKAVARGVKEELDFEEGGGMDDEPPPKLEVLWTVQGVVGVGLKGWRVKKEDKEEE 652
            RC S+  +LL R + T     L   A FSS SRAPP+P+A WP    + T+GLD+A+F  LWESALDAHARG+Y EAL +A+AS+E AA+G+ GSLGREHALRM +HL G+A +QLG V +AV+SLE+AK +A+RVSGAG GDDAYTDLGGVLNDLG+AKALAGD + AQKN+SRTLYMA+RAYRPDEDL+SAACSN+AEVM      G GE E   +E+VE+AE+AARLTDKMERLSL+R  +  EE     G    A  G  GG+  P   +S  + +A++ +        GVW LP +LL  HERSTRRRLILGR L RA+R EE AYY+F+ALQD+R SG+RCNPILYAQCLAAVG+MHL+SLL  G  TDLSHLAAAGCR+DNEMTW AQGLL RA+G+L P LG+ HPE VAC ANLAL  PL R   VL +AM     ++  ++                    G    E  S++S  ++G          +R+    S    +Q P  +P  A                 +   L  N++ L  L+IA+G  +A  HCAV+LVAAK +RR K      I + +T I   +    G GG     RG  +    EE    ++EPPP L+VLWT+QGVVGVGL+ W VK   + E+
Sbjct:    4 RCISKSRWLLPRISATSCLHALPKAATFSSFSRAPPLPSAQWPTQSEMPTNGLDSAIFKTLWESALDAHARGRYAEALAKAKASIETAAEGEHGSLGREHALRMAHHLTGVAYMQLGCVAQAVQSLEQAKDIAIRVSGAGGGDDAYTDLGGVLNDLGVAKALAGDKKAAQKNVSRTLYMARRAYRPDEDLVSAACSNLAEVMWMMDGEGGGEGEGIAQEAVELAEKAARLTDKMERLSLLRQSSAKEEAEPVGGEDTEATPGRKGGSYLPPMPASDASIQAKSAST-------GVWALPVELLAFHERSTRRRLILGRCLARAHREEEAAYYLFQALQDSRRSGLRCNPILYAQCLAAVGNMHLLSLLRRGLGTDLSHLAAAGCREDNEMTWDAQGLLVRALGVLEPVLGKEHPEVVACHANLALFQPLARAEAVLADAMRAAGGEREDRE------------------GGGGPGGEMESNSSKKVDG----HREHEAVRSEEEGSG--AAQSPLSSPPVAR---------------EMMRVLEGNRQALNTLIIAVGRHKADRHCAVELVAAKQRRRAKGRQTADISLASTEIPVGTDVGQGEGGCDGFGRGTTDGGIEEE---EEEEPPPPLQVLWTLQGVVGVGLQAWDVKAGGRGEK 615

The following BLAST results are available for this feature:

BLAST of NO08G03840.1 vs.

BLAST of NO08G03840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26860.1	1.300e-149	51.13	Tetratricopeptide-like helical [Nannochloropsis ga...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO08G03840	NO08G03840	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO08G03840.1	NO08G03840.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO08G03840.1.cds1	NO08G03840.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:1084912..1086974-
coding sequence from alignment at chr8:1084912..1086974-

mRNA sequence

>NO08G03840.1 ID=NO08G03840.1|Name=NO08G03840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2063bp
ACAGCCATGCACCGGTGCTTCAGTCGCGGGGCTTTTCTGCTCCGCCGGTT
CAATCCCACGTTGCTTACCCCTGCCCCCTTCTCTTCCCTCTCCCGGGCCC
CTCCCGTGCCCGCTGCGAATTGGCCCAAAACTCCAGCTGTGGCCACGGAT
GGGTTGGACGCCGCCGTCTTTACCCCTTTGTGGGAGAGTGCGCTTGATGC
CCATGCCCGGGGACAGTACCTTGAGGCCCTGAGACAGGCCCAGGCCAGCG
TGGAGATGGCCGCAAAGGGCAAACGAGGGAGCTTGGGACGTGAACACGCG
TTGCGGATGGGCTATCACTTGCGGGGCCTGGCCTTATTGCAACTAGGCCG
GGTGAATGAAGCGGTGGAAAGCCTCGAACGCGCCAAGGTTGTTGCGGTTC
GTGTGAGTGGTGCTGGGGCGGGCGACGACGCGTATACAGACCTTGGCGGA
GTCTTAAATGACTTGGGCATTGCCAAGGCGCTAGCAGGCGACGGGGAGGG
GGCACAGAAAAACATCAGTCGCACACTTTACATGGCTCAACGTGCCTACC
GTCCTGACGAGGACTTGATATCAGCGGCTTGTAGTAATATGGCGGAGGTC
ATGCGAGCAAGGGGGAAGAACGGGGAGGGGGAATGGGAGGATGAGGAGTC
AGTGGAGATGGCCGAAAGGGCGGCGCGCCTAACGGACAAGATGGAACGAT
TATCTTTGATGCGGCCACCAGCAGACATGGAGGAGGAAAATGAAACGGCT
GGTGCAAAAGGTGGAGGAGTGGGAGGGGCAAGCTGCCCCACCTCCTCCTC
TTCTTCCATTGCAGAAGAAGCAGAAGCAGAAGCCATTTTATCCATGGCCC
GCAAAGGAGGTGTCTGGGACCTTCCTGCAGACCTTCTCAATCTCCACGAA
CGGAGCACCCGTCGCCGCCTGATTTTAGGTCGTACCCTTATTCGTGCTAA
TCGAGGAGAAGAAGGCGCTTATTACATCTTCCGGGCCCTTCAAGACGCAC
GGGCGTCTGGCATCCGATGTAATCCCATTCTTTACGCACAGTGCTTGGCT
GCCGTGGGAAGCATGCATTTAATCTCCCTCCTTCACCACGGGTCGCTGAC
CGATCTATCGCACTTGGCAGCGGCGGGGTGTCGGGATGATAACGAAATGA
CATGGTCCGCGCAGGGGTTGCTCGAGAGGGCAGTAGGCATCTTGGCACCA
TGTCTGGGCGAGGCTCATCCGGAGACGGTGGCGTGTAAAGCGAATTTGGC
CTTGTTGCTTCCCTTGGGGAGGGGCGTGGAGGTTTTGGGGGAGGCGATGG
CGGAGGTGGAGAAGCAGCAGGTACAGCAGCAGCAGGAGGAGGAGCAACAG
CAGCAGCAGCCAGCAGAGGGGAAGGGCAAGAGTATGAGAGCTGGTGATGA
CGAGGAGGAGAGCACCAGCAGTACCAGCAACGCCATCGAAGGCGTAGGAT
ATCCTCCTCCTTCTTCTCCTTTAATTCGCACACCTGCACCATCATCACCA
CCAGAAACATCACAACCACCACCACCAGCGCCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACGATGCCCTCCCTCCATG
CGGCCCTAACTCGTAATAAAGAGGGACTCCAAGCTCTACTTATTGCGATA
GGACATAGTCAGGCCCATGTGCACTGTGCAGTCGATCTTGTGGCAGCGAA
GCTGCAGAGGAGGAGGAAGTTGGAGGGAGGGAGGGGAATAAGGATGACCA
CTGCAATCTCGTCGTCGTCGTCGGAGGCGGGAGGAGTAGGAGGGGGAAAA
GCAGTGGCAAGAGGTGTGAAAGAGGAGCTTGACTTCGAGGAGGGGGGAGG
AATGGATGACGAGCCACCGCCTAAGTTGGAAGTACTATGGACGGTCCAGG
GTGTGGTTGGTGTGGGTTTGAAAGGATGGAGGGTCAAGAAGGAGGACAAG
GAGGAGGAGGAGGAAGGGACGTGAGGAGGGGTGTGTGAGGGCAGGAGTAT
TAAGCCGTTATAAAGAGCGGCACGGTGGATGTAGTAAAGTATGTAAATAC
CTATCCAAAGGCA

protein sequence of NO08G03840.1

>NO08G03840.1-protein ID=NO08G03840.1-protein|Name=NO08G03840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=656bp
MHRCFSRGAFLLRRFNPTLLTPAPFSSLSRAPPVPAANWPKTPAVATDGL
DAAVFTPLWESALDAHARGQYLEALRQAQASVEMAAKGKRGSLGREHALR
MGYHLRGLALLQLGRVNEAVESLERAKVVAVRVSGAGAGDDAYTDLGGVL
NDLGIAKALAGDGEGAQKNISRTLYMAQRAYRPDEDLISAACSNMAEVMR
ARGKNGEGEWEDEESVEMAERAARLTDKMERLSLMRPPADMEEENETAGA
KGGGVGGASCPTSSSSSIAEEAEAEAILSMARKGGVWDLPADLLNLHERS
TRRRLILGRTLIRANRGEEGAYYIFRALQDARASGIRCNPILYAQCLAAV
GSMHLISLLHHGSLTDLSHLAAAGCRDDNEMTWSAQGLLERAVGILAPCL
GEAHPETVACKANLALLLPLGRGVEVLGEAMAEVEKQQVQQQQEEEQQQQ
QPAEGKGKSMRAGDDEEESTSSTSNAIEGVGYPPPSSPLIRTPAPSSPPE
TSQPPPPAPAAAAAAAAAAAAAAAATMPSLHAALTRNKEGLQALLIAIGH
SQAHVHCAVDLVAAKLQRRRKLEGGRGIRMTTAISSSSSEAGGVGGGKAV
ARGVKEELDFEEGGGMDDEPPPKLEVLWTVQGVVGVGLKGWRVKKEDKEE
EEEGT*

mRNA from alignment at chr8:1084912..1086974-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO08G03840.1 ID=NO08G03840.1|Name=NO08G03840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2063bp|location=Sequence derived from alignment at chr8:1084912..1086974- (Nannochloropsis oceanica)
ACAGCCATGCACCGGTGCTTCAGTCGCGGGGCTTTTCTGCTCCGCCGGTT
CAATCCCACGTTGCTTACCCCTGCCCCCTTCTCTTCCCTCTCCCGGGCCC
CTCCCGTGCCCGCTGCGAATTGGCCCAAAACTCCAGCTGTGGCCACGGAT
GGGTTGGACGCCGCCGTCTTTACCCCTTTGTGGGAGAGTGCGCTTGATGC
CCATGCCCGGGGACAGTACCTTGAGGCCCTGAGACAGGCCCAGGCCAGCG
TGGAGATGGCCGCAAAGGGCAAACGAGGGAGCTTGGGACGTGAACACGCG
TTGCGGATGGGCTATCACTTGCGGGGCCTGGCCTTATTGCAACTAGGCCG
GGTGAATGAAGCGGTGGAAAGCCTCGAACGCGCCAAGGTTGTTGCGGTTC
GTGTGAGTGGTGCTGGGGCGGGCGACGACGCGTATACAGACCTTGGCGGA
GTCTTAAATGACTTGGGCATTGCCAAGGCGCTAGCAGGCGACGGGGAGGG
GGCACAGAAAAACATCAGTCGCACACTTTACATGGCTCAACGTGCCTACC
GTCCTGACGAGGACTTGATATCAGCGGCTTGTAGTAATATGGCGGAGGTC
ATGCGAGCAAGGGGGAAGAACGGGGAGGGGGAATGGGAGGATGAGGAGTC
AGTGGAGATGGCCGAAAGGGCGGCGCGCCTAACGGACAAGATGGAACGAT
TATCTTTGATGCGGCCACCAGCAGACATGGAGGAGGAAAATGAAACGGCT
GGTGCAAAAGGTGGAGGAGTGGGAGGGGCAAGCTGCCCCACCTCCTCCTC
TTCTTCCATTGCAGAAGAAGCAGAAGCAGAAGCCATTTTATCCATGGCCC
GCAAAGGAGGTGTCTGGGACCTTCCTGCAGACCTTCTCAATCTCCACGAA
CGGAGCACCCGTCGCCGCCTGATTTTAGGTCGTACCCTTATTCGTGCTAA
TCGAGGAGAAGAAGGCGCTTATTACATCTTCCGGGCCCTTCAAGACGCAC
GGGCGTCTGGCATCCGATGTAATCCCATTCTTTACGCACAGTGCTTGGCT
GCCGTGGGAAGCATGCATTTAATCTCCCTCCTTCACCACGGGTCGCTGAC
CGATCTATCGCACTTGGCAGCGGCGGGGTGTCGGGATGATAACGAAATGA
CATGGTCCGCGCAGGGGTTGCTCGAGAGGGCAGTAGGCATCTTGGCACCA
TGTCTGGGCGAGGCTCATCCGGAGACGGTGGCGTGTAAAGCGAATTTGGC
CTTGTTGCTTCCCTTGGGGAGGGGCGTGGAGGTTTTGGGGGAGGCGATGG
CGGAGGTGGAGAAGCAGCAGGTACAGCAGCAGCAGGAGGAGGAGCAACAG
CAGCAGCAGCCAGCAGAGGGGAAGGGCAAGAGTATGAGAGCTGGTGATGA
CGAGGAGGAGAGCACCAGCAGTACCAGCAACGCCATCGAAGGCGTAGGAT
ATCCTCCTCCTTCTTCTCCTTTAATTCGCACACCTGCACCATCATCACCA
CCAGAAACATCACAACCACCACCACCAGCGCCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACGATGCCCTCCCTCCATG
CGGCCCTAACTCGTAATAAAGAGGGACTCCAAGCTCTACTTATTGCGATA
GGACATAGTCAGGCCCATGTGCACTGTGCAGTCGATCTTGTGGCAGCGAA
GCTGCAGAGGAGGAGGAAGTTGGAGGGAGGGAGGGGAATAAGGATGACCA
CTGCAATCTCGTCGTCGTCGTCGGAGGCGGGAGGAGTAGGAGGGGGAAAA
GCAGTGGCAAGAGGTGTGAAAGAGGAGCTTGACTTCGAGGAGGGGGGAGG
AATGGATGACGAGCCACCGCCTAAGTTGGAAGTACTATGGACGGTCCAGG
GTGTGGTTGGTGTGGGTTTGAAAGGATGGAGGGTCAAGAAGGAGGACAAG
GAGGAGGAGGAGGAAGGGACGTGAGGAGGGGTGTGTGAGGGCAGGAGTAT
TAAGCCGTTATAAAGAGCGGCACGGTGGATGTAGTAAAGTATGTAAATAC
CTATCCAAAGGCA

Coding sequence (CDS) from alignment at chr8:1084912..1086974-

>NO08G03840.1 ID=NO08G03840.1|Name=NO08G03840.1|organism=Nannochloropsis oceanica|type=CDS|length=1968bp|location=Sequence derived from alignment at chr8:1084912..1086974- (Nannochloropsis oceanica)
ATGCACCGGTGCTTCAGTCGCGGGGCTTTTCTGCTCCGCCGGTTCAATCC
CACGTTGCTTACCCCTGCCCCCTTCTCTTCCCTCTCCCGGGCCCCTCCCG
TGCCCGCTGCGAATTGGCCCAAAACTCCAGCTGTGGCCACGGATGGGTTG
GACGCCGCCGTCTTTACCCCTTTGTGGGAGAGTGCGCTTGATGCCCATGC
CCGGGGACAGTACCTTGAGGCCCTGAGACAGGCCCAGGCCAGCGTGGAGA
TGGCCGCAAAGGGCAAACGAGGGAGCTTGGGACGTGAACACGCGTTGCGG
ATGGGCTATCACTTGCGGGGCCTGGCCTTATTGCAACTAGGCCGGGTGAA
TGAAGCGGTGGAAAGCCTCGAACGCGCCAAGGTTGTTGCGGTTCGTGTGA
GTGGTGCTGGGGCGGGCGACGACGCGTATACAGACCTTGGCGGAGTCTTA
AATGACTTGGGCATTGCCAAGGCGCTAGCAGGCGACGGGGAGGGGGCACA
GAAAAACATCAGTCGCACACTTTACATGGCTCAACGTGCCTACCGTCCTG
ACGAGGACTTGATATCAGCGGCTTGTAGTAATATGGCGGAGGTCATGCGA
GCAAGGGGGAAGAACGGGGAGGGGGAATGGGAGGATGAGGAGTCAGTGGA
GATGGCCGAAAGGGCGGCGCGCCTAACGGACAAGATGGAACGATTATCTT
TGATGCGGCCACCAGCAGACATGGAGGAGGAAAATGAAACGGCTGGTGCA
AAAGGTGGAGGAGTGGGAGGGGCAAGCTGCCCCACCTCCTCCTCTTCTTC
CATTGCAGAAGAAGCAGAAGCAGAAGCCATTTTATCCATGGCCCGCAAAG
GAGGTGTCTGGGACCTTCCTGCAGACCTTCTCAATCTCCACGAACGGAGC
ACCCGTCGCCGCCTGATTTTAGGTCGTACCCTTATTCGTGCTAATCGAGG
AGAAGAAGGCGCTTATTACATCTTCCGGGCCCTTCAAGACGCACGGGCGT
CTGGCATCCGATGTAATCCCATTCTTTACGCACAGTGCTTGGCTGCCGTG
GGAAGCATGCATTTAATCTCCCTCCTTCACCACGGGTCGCTGACCGATCT
ATCGCACTTGGCAGCGGCGGGGTGTCGGGATGATAACGAAATGACATGGT
CCGCGCAGGGGTTGCTCGAGAGGGCAGTAGGCATCTTGGCACCATGTCTG
GGCGAGGCTCATCCGGAGACGGTGGCGTGTAAAGCGAATTTGGCCTTGTT
GCTTCCCTTGGGGAGGGGCGTGGAGGTTTTGGGGGAGGCGATGGCGGAGG
TGGAGAAGCAGCAGGTACAGCAGCAGCAGGAGGAGGAGCAACAGCAGCAG
CAGCCAGCAGAGGGGAAGGGCAAGAGTATGAGAGCTGGTGATGACGAGGA
GGAGAGCACCAGCAGTACCAGCAACGCCATCGAAGGCGTAGGATATCCTC
CTCCTTCTTCTCCTTTAATTCGCACACCTGCACCATCATCACCACCAGAA
ACATCACAACCACCACCACCAGCGCCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAACGATGCCCTCCCTCCATGCGGCCC
TAACTCGTAATAAAGAGGGACTCCAAGCTCTACTTATTGCGATAGGACAT
AGTCAGGCCCATGTGCACTGTGCAGTCGATCTTGTGGCAGCGAAGCTGCA
GAGGAGGAGGAAGTTGGAGGGAGGGAGGGGAATAAGGATGACCACTGCAA
TCTCGTCGTCGTCGTCGGAGGCGGGAGGAGTAGGAGGGGGAAAAGCAGTG
GCAAGAGGTGTGAAAGAGGAGCTTGACTTCGAGGAGGGGGGAGGAATGGA
TGACGAGCCACCGCCTAAGTTGGAAGTACTATGGACGGTCCAGGGTGTGG
TTGGTGTGGGTTTGAAAGGATGGAGGGTCAAGAAGGAGGACAAGGAGGAG
GAGGAGGAAGGGACGTGA

Synonyms

Publications