NO08G03800, NO08G03800 (gene) Nannochloropsis oceanica

Overview
NameNO08G03800
Unique NameNO08G03800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1167
Alignment locationchr8:1073528..1074694 -

Link to JBrowse

Properties
Property NameValue
DescriptionProteasome alpha 1 subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1073528..1074694 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029055Ntn_hydrolases_N
Vocabulary: Biological Process
TermDefinition
GO:0051603proteolysis involved in cellular protein catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0019773proteasome core complex, alpha-subunit complex
GO:0005839proteasome core complex
GO:0000502proteasome complex
Vocabulary: Molecular Function
TermDefinition
GO:0004298threonine-type endopeptidase activity
Homology
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BLAST of NO08G03800 vs. NCBI_GenBank
Match: EWM26844.1 (proteasome alpha 1 subunit [Nannochloropsis gaditana])

HSP 1 Score: 270.8 bits (691), Expect = 6.700e-69
Identity = 163/339 (48.08%), Postives = 192/339 (56.64%), Query Frame = 0 
Query:   44 PGGFTAKGELPQMEFARLGAYRFASPSVCVRTRQACYVLCARPERNPLREVYKEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLVSPGIGCLCQGQDGDVLAQLGLMRREAERYLHTFAHPISARSLAQRLGAILGGKGQETWSRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFSSFPSSPHKGRRKDGCQEAEMYLVDPTGLVLCVRGQAFGGRLVDDPVAHELQEWLAREETFGRIDDGGEGEXXXXXXXXXXXXVWAKLWEGMQKYFPTLVGHPEEVECAKAARSSFRRVGTLDQVL 383
            PGGF+++GELPQ++FARLGAYRFASPS+CVRTR+ACYVLCARPE++PL++ Y+                              HLVSPGIGCLCQGQDGDVLA LGLMRREAE+YLH F HPISAR LAQR+G ILGGKGQETWSRP                                                                  ++ PSSP +     G  EAEMY +DPTGLV  +RGQ FGG+   DPVAH+LQEWL     F +  D  EGE   XXXXXXXXX       GM+K+ P +  HPE VECA+AA SSFRR+G +  V+
Sbjct:   46 PGGFSSRGELPQLDFARLGAYRFASPSLCVRTRRACYVLCARPEQHPLQDNYE-------VDPLSRDTITIPATTSSSTGRGVHLVSPGIGCLCQGQDGDVLALLGLMRREAEKYLHAFGHPISARVLAQRVGTILGGKGQETWSRPLCCISVLMSSSGTATSA-------------------------------------------------AAIPSSPFRSSSLRG--EAEMYQIDPTGLVFSIRGQVFGGKDATDPVAHDLQEWLG---CFLQERD-AEGEKGRXXXXXXXXXXXXXXXXGMKKFIPNVAQHPESVECARAAASSFRRLGPVTVVV 322
The following BLAST results are available for this feature:
BLAST of NO08G03800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26844.16.700e-6948.08proteasome alpha 1 subunit [Nannochloropsis gadita... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008624NSK008624Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03800.1NO08G03800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629082gene_3713Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100263g5gene3693Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03800.1NO08G03800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03800 ID=NO08G03800|Name=NO08G03800|organism=Nannochloropsis oceanica|type=gene|length=1167bp
ATGATCGCCACTGCTCCCAACTACTGGAGGCATTTTTGGCCCTGTTTCGT
TTTCCTGCAGTTCCTCTTCGTTTTCCAGCAAAGTTTTTCCGCAGCCTCCT
CATCCTCTCCCAGCACAACGACAAGCGCTCCTGGAGGCTTTACTGCAAAG
GGAGAGCTGCCGCAAATGGAGTTTGCGCGTTTGGGAGCTTATCGCTTCGC
TTCGCCTAGTGTGTGTGTACGGACACGCCAAGCTTGCTACGTCTTGTGTG
CCCGGCCTGAGCGAAACCCGCTGCGGGAGGTCTACAAGGAGGGTAGCAGC
AGTAGCAGTAGCAGTAGTAGTAGCAGCACCAGCACCAGTTATTCAAGCAG
CAGCGGCAGCAGCACAGGAAGTGGGATTCATCTCGTCTCGCCCGGGATTG
GTTGTCTTTGCCAGGGGCAAGACGGGGACGTGCTCGCCCAGTTAGGTCTG
ATGCGACGGGAGGCAGAGAGGTACCTACATACTTTTGCCCATCCTATCTC
TGCTCGCAGCCTGGCACAGCGACTGGGGGCAATATTGGGGGGAAAAGGAC
AGGAGACATGGTCTAGACCACCATGTTGTATTTCGGTAATCATGTCTTCC
TCGGGTGGATCGTTTTCACCACCACCATCATCAGCAGCTGGGGCAACAGC
AGTAGCTGGAGGAGCAGTAGCAGCAACAGCAGGAGTAGGAGTAGTGGCAG
ATGGAGTAGAAGAAGATAGAGAAGGAGGACGAGAAAGAGGAGGGGGAGGA
GGAGTAGCAGCTCCCTTCTCTTCCTTTCCCTCCTCCCCTCATAAGGGGAG
AAGAAAGGATGGGTGTCAAGAGGCCGAGATGTACCTGGTGGACCCGACGG
GCTTAGTGTTATGTGTGCGGGGACAGGCTTTCGGTGGAAGGCTCGTGGAT
GATCCCGTGGCACATGAGCTGCAGGAGTGGTTGGCGAGGGAAGAGACGTT
CGGGCGTATCGACGATGGAGGGGAGGGAGAGGGGGTGGAGGACGAGGGAG
GAGAGGAGGAGGGGGTGGTATGGGCGAAGCTGTGGGAGGGGATGCAAAAA
TACTTTCCGACCCTTGTGGGGCATCCGGAGGAGGTGGAGTGTGCAAAGGC
GGCGAGGTCGTCGTTTCGAAGGGTGGGGACCTTGGATCAGGTGTTGTTGA
GATGTGGTGGAAAATAA
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protein sequence of NO08G03800.1

>NO08G03800.1-protein ID=NO08G03800.1-protein|Name=NO08G03800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=389bp
MIATAPNYWRHFWPCFVFLQFLFVFQQSFSAASSSSPSTTTSAPGGFTAK
GELPQMEFARLGAYRFASPSVCVRTRQACYVLCARPERNPLREVYKEGSS
SSSSSSSSSTSTSYSSSSGSSTGSGIHLVSPGIGCLCQGQDGDVLAQLGL
MRREAERYLHTFAHPISARSLAQRLGAILGGKGQETWSRPPCCISVIMSS
SGGSFSPPPSSAAGATAVAGGAVAATAGVGVVADGVEEDREGGRERGGGG
GVAAPFSSFPSSPHKGRRKDGCQEAEMYLVDPTGLVLCVRGQAFGGRLVD
DPVAHELQEWLAREETFGRIDDGGEGEGVEDEGGEEEGVVWAKLWEGMQK
YFPTLVGHPEEVECAKAARSSFRRVGTLDQVLLRCGGK*
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Synonyms
Publications