NO08G03800.1, NO08G03800.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03800.1
Unique NameNO08G03800.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1167
Alignment locationchr8:1073528..1074694 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1073528..1074694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G03800.1 vs.
Match: EWM26844.1 (proteasome alpha 1 subunit [Nannochloropsis gaditana])

HSP 1 Score: 228.8 bits (582), Expect = 2.900e-56
Identity = 129/207 (62.32%), Postives = 159/207 (76.81%), Query Frame = 0 
Query:   18 FLQFLFVFQQSFSAASSSSPSTTTSAPGGFTAKGELPQMEFARLGAYRFASPSVCVRTRQACYVLCARPERNPLREVYKEGSSSSSSSSSSSTSTSYSSSSGSSTGSGIHLVSPGIGCLCQGQDGDVLAQLGLMRREAERYLHTFAHPISARSLAQRLGAILGGKGQETWSRPPCCISVIMSSSGGSFSPP--PSSAAGATAVAGGA 223
            F+ F FV     S  S+S P+   +APGGF+++GELPQ++FARLGAYRFASPS+CVRTR+ACYVLCARPE++PL++ Y+    S  + +  +T++S       STG G+HLVSPGIGCLCQGQDGDVLA LGLMRREAE+YLH F HPISAR LAQR+G ILGGKGQETWSRP CCISV+MSSSG + S    PSS   ++++ G A
Sbjct:   20 FVNFFFVPALCSSPPSTSVPNGGGTAPGGFSSRGELPQLDFARLGAYRFASPSLCVRTRRACYVLCARPEQHPLQDNYEVDPLSRDTITIPATTSS-------STGRGVHLVSPGIGCLCQGQDGDVLALLGLMRREAEKYLHAFGHPISARVLAQRVGTILGGKGQETWSRPLCCISVLMSSSGTATSAAAIPSSPFRSSSLRGEA 219
The following BLAST results are available for this feature:
BLAST of NO08G03800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26844.12.900e-5662.32proteasome alpha 1 subunit [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03800NO08G03800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03800.1NO08G03800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03800.1.cds1NO08G03800.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03800.1 ID=NO08G03800.1|Name=NO08G03800.1|organism=Nannochloropsis oceanica|type=mRNA|length=1167bp
ATGATCGCCACTGCTCCCAACTACTGGAGGCATTTTTGGCCCTGTTTCGT
TTTCCTGCAGTTCCTCTTCGTTTTCCAGCAAAGTTTTTCCGCAGCCTCCT
CATCCTCTCCCAGCACAACGACAAGCGCTCCTGGAGGCTTTACTGCAAAG
GGAGAGCTGCCGCAAATGGAGTTTGCGCGTTTGGGAGCTTATCGCTTCGC
TTCGCCTAGTGTGTGTGTACGGACACGCCAAGCTTGCTACGTCTTGTGTG
CCCGGCCTGAGCGAAACCCGCTGCGGGAGGTCTACAAGGAGGGTAGCAGC
AGTAGCAGTAGCAGTAGTAGTAGCAGCACCAGCACCAGTTATTCAAGCAG
CAGCGGCAGCAGCACAGGAAGTGGGATTCATCTCGTCTCGCCCGGGATTG
GTTGTCTTTGCCAGGGGCAAGACGGGGACGTGCTCGCCCAGTTAGGTCTG
ATGCGACGGGAGGCAGAGAGGTACCTACATACTTTTGCCCATCCTATCTC
TGCTCGCAGCCTGGCACAGCGACTGGGGGCAATATTGGGGGGAAAAGGAC
AGGAGACATGGTCTAGACCACCATGTTGTATTTCGGTAATCATGTCTTCC
TCGGGTGGATCGTTTTCACCACCACCATCATCAGCAGCTGGGGCAACAGC
AGTAGCTGGAGGAGCAGTAGCAGCAACAGCAGGAGTAGGAGTAGTGGCAG
ATGGAGTAGAAGAAGATAGAGAAGGAGGACGAGAAAGAGGAGGGGGAGGA
GGAGTAGCAGCTCCCTTCTCTTCCTTTCCCTCCTCCCCTCATAAGGGGAG
AAGAAAGGATGGGTGTCAAGAGGCCGAGATGTACCTGGTGGACCCGACGG
GCTTAGTGTTATGTGTGCGGGGACAGGCTTTCGGTGGAAGGCTCGTGGAT
GATCCCGTGGCACATGAGCTGCAGGAGTGGTTGGCGAGGGAAGAGACGTT
CGGGCGTATCGACGATGGAGGGGAGGGAGAGGGGGTGGAGGACGAGGGAG
GAGAGGAGGAGGGGGTGGTATGGGCGAAGCTGTGGGAGGGGATGCAAAAA
TACTTTCCGACCCTTGTGGGGCATCCGGAGGAGGTGGAGTGTGCAAAGGC
GGCGAGGTCGTCGTTTCGAAGGGTGGGGACCTTGGATCAGGTGTTGTTGA
GATGTGGTGGAAAATAA
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protein sequence of NO08G03800.1

>NO08G03800.1-protein ID=NO08G03800.1-protein|Name=NO08G03800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=389bp
MIATAPNYWRHFWPCFVFLQFLFVFQQSFSAASSSSPSTTTSAPGGFTAK
GELPQMEFARLGAYRFASPSVCVRTRQACYVLCARPERNPLREVYKEGSS
SSSSSSSSSTSTSYSSSSGSSTGSGIHLVSPGIGCLCQGQDGDVLAQLGL
MRREAERYLHTFAHPISARSLAQRLGAILGGKGQETWSRPPCCISVIMSS
SGGSFSPPPSSAAGATAVAGGAVAATAGVGVVADGVEEDREGGRERGGGG
GVAAPFSSFPSSPHKGRRKDGCQEAEMYLVDPTGLVLCVRGQAFGGRLVD
DPVAHELQEWLAREETFGRIDDGGEGEGVEDEGGEEEGVVWAKLWEGMQK
YFPTLVGHPEEVECAKAARSSFRRVGTLDQVLLRCGGK*
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mRNA from alignment at chr8:1073528..1074694-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03800.1 ID=NO08G03800.1|Name=NO08G03800.1|organism=Nannochloropsis oceanica|type=mRNA|length=1167bp|location=Sequence derived from alignment at chr8:1073528..1074694- (Nannochloropsis oceanica)
ATGATCGCCACTGCTCCCAACTACTGGAGGCATTTTTGGCCCTGTTTCGT
TTTCCTGCAGTTCCTCTTCGTTTTCCAGCAAAGTTTTTCCGCAGCCTCCT
CATCCTCTCCCAGCACAACGACAAGCGCTCCTGGAGGCTTTACTGCAAAG
GGAGAGCTGCCGCAAATGGAGTTTGCGCGTTTGGGAGCTTATCGCTTCGC
TTCGCCTAGTGTGTGTGTACGGACACGCCAAGCTTGCTACGTCTTGTGTG
CCCGGCCTGAGCGAAACCCGCTGCGGGAGGTCTACAAGGAGGGTAGCAGC
AGTAGCAGTAGCAGTAGTAGTAGCAGCACCAGCACCAGTTATTCAAGCAG
CAGCGGCAGCAGCACAGGAAGTGGGATTCATCTCGTCTCGCCCGGGATTG
GTTGTCTTTGCCAGGGGCAAGACGGGGACGTGCTCGCCCAGTTAGGTCTG
ATGCGACGGGAGGCAGAGAGGTACCTACATACTTTTGCCCATCCTATCTC
TGCTCGCAGCCTGGCACAGCGACTGGGGGCAATATTGGGGGGAAAAGGAC
AGGAGACATGGTCTAGACCACCATGTTGTATTTCGGTAATCATGTCTTCC
TCGGGTGGATCGTTTTCACCACCACCATCATCAGCAGCTGGGGCAACAGC
AGTAGCTGGAGGAGCAGTAGCAGCAACAGCAGGAGTAGGAGTAGTGGCAG
ATGGAGTAGAAGAAGATAGAGAAGGAGGACGAGAAAGAGGAGGGGGAGGA
GGAGTAGCAGCTCCCTTCTCTTCCTTTCCCTCCTCCCCTCATAAGGGGAG
AAGAAAGGATGGGTGTCAAGAGGCCGAGATGTACCTGGTGGACCCGACGG
GCTTAGTGTTATGTGTGCGGGGACAGGCTTTCGGTGGAAGGCTCGTGGAT
GATCCCGTGGCACATGAGCTGCAGGAGTGGTTGGCGAGGGAAGAGACGTT
CGGGCGTATCGACGATGGAGGGGAGGGAGAGGGGGTGGAGGACGAGGGAG
GAGAGGAGGAGGGGGTGGTATGGGCGAAGCTGTGGGAGGGGATGCAAAAA
TACTTTCCGACCCTTGTGGGGCATCCGGAGGAGGTGGAGTGTGCAAAGGC
GGCGAGGTCGTCGTTTCGAAGGGTGGGGACCTTGGATCAGGTGTTGTTGA
GATGTGGTGGAAAATAA
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Coding sequence (CDS) from alignment at chr8:1073528..1074694-

>NO08G03800.1 ID=NO08G03800.1|Name=NO08G03800.1|organism=Nannochloropsis oceanica|type=CDS|length=1167bp|location=Sequence derived from alignment at chr8:1073528..1074694- (Nannochloropsis oceanica)
ATGATCGCCACTGCTCCCAACTACTGGAGGCATTTTTGGCCCTGTTTCGT
TTTCCTGCAGTTCCTCTTCGTTTTCCAGCAAAGTTTTTCCGCAGCCTCCT
CATCCTCTCCCAGCACAACGACAAGCGCTCCTGGAGGCTTTACTGCAAAG
GGAGAGCTGCCGCAAATGGAGTTTGCGCGTTTGGGAGCTTATCGCTTCGC
TTCGCCTAGTGTGTGTGTACGGACACGCCAAGCTTGCTACGTCTTGTGTG
CCCGGCCTGAGCGAAACCCGCTGCGGGAGGTCTACAAGGAGGGTAGCAGC
AGTAGCAGTAGCAGTAGTAGTAGCAGCACCAGCACCAGTTATTCAAGCAG
CAGCGGCAGCAGCACAGGAAGTGGGATTCATCTCGTCTCGCCCGGGATTG
GTTGTCTTTGCCAGGGGCAAGACGGGGACGTGCTCGCCCAGTTAGGTCTG
ATGCGACGGGAGGCAGAGAGGTACCTACATACTTTTGCCCATCCTATCTC
TGCTCGCAGCCTGGCACAGCGACTGGGGGCAATATTGGGGGGAAAAGGAC
AGGAGACATGGTCTAGACCACCATGTTGTATTTCGGTAATCATGTCTTCC
TCGGGTGGATCGTTTTCACCACCACCATCATCAGCAGCTGGGGCAACAGC
AGTAGCTGGAGGAGCAGTAGCAGCAACAGCAGGAGTAGGAGTAGTGGCAG
ATGGAGTAGAAGAAGATAGAGAAGGAGGACGAGAAAGAGGAGGGGGAGGA
GGAGTAGCAGCTCCCTTCTCTTCCTTTCCCTCCTCCCCTCATAAGGGGAG
AAGAAAGGATGGGTGTCAAGAGGCCGAGATGTACCTGGTGGACCCGACGG
GCTTAGTGTTATGTGTGCGGGGACAGGCTTTCGGTGGAAGGCTCGTGGAT
GATCCCGTGGCACATGAGCTGCAGGAGTGGTTGGCGAGGGAAGAGACGTT
CGGGCGTATCGACGATGGAGGGGAGGGAGAGGGGGTGGAGGACGAGGGAG
GAGAGGAGGAGGGGGTGGTATGGGCGAAGCTGTGGGAGGGGATGCAAAAA
TACTTTCCGACCCTTGTGGGGCATCCGGAGGAGGTGGAGTGTGCAAAGGC
GGCGAGGTCGTCGTTTCGAAGGGTGGGGACCTTGGATCAGGTGTTGTTGA
GATGTGGTGGAAAATAA
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Synonyms
Publications