NO08G03730, NO08G03730 (gene) Nannochloropsis oceanica

Overview
NameNO08G03730
Unique NameNO08G03730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1215
Alignment locationchr8:1051331..1052545 +

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Properties
Property NameValue
DescriptionGlycine cleavage system h protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1051331..1052545 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005960glycine cleavage complex
GO:0005739mitochondrion
Vocabulary: Biological Process
TermDefinition
GO:0019464glycine decarboxylation via glycine cleavage system
GO:0009987cellular process
GO:0009056catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR011053Single_hybrid_motif
IPR000089Biotin_lipoyl
IPR002930GCV_H
IPR033753GCV_H/Fam206
Homology
BLAST of NO08G03730 vs. NCBI_GenBank
Match: XP_005854003.1 (glycine cleavage system h protein [Nannochloropsis gaditana CCMP526] >EKU22358.1 glycine cleavage system h protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 238.0 bits (606), Expect = 2.500e-59
Identity = 120/149 (80.54%), Postives = 134/149 (89.93%), Query Frame = 0
Query:   52 MLAIATRQLARRVAFTPAARQLNITRTLASTRYATSHEWVKLDGDVATVGITGFAAKALGDVVYVDLPEVGASFAKGDPFGSVESVKAASDVYAPISGEIVESNAALSDDPGNVNKAAETDAWFAKFKVTDKSEFDALMDSEAYKAHTE 201
            MLA ATR +ARR+A +    Q  + RTLA+TRYATSHEWVKLDGD+ATVGIT FAAKALGDVVYVDLPEVGASF+KGDPFGSVESVKAASDVYAP+SGEI+ESNA+LS+DPGNVN AAETDAWF KFKVTDK+EF+ALMD+ AYK HTE
Sbjct:    1 MLATATRHVARRIACSSTVFQPTLRRTLATTRYATSHEWVKLDGDIATVGITDFAAKALGDVVYVDLPEVGASFSKGDPFGSVESVKAASDVYAPVSGEIIESNASLSEDPGNVNNAAETDAWFTKFKVTDKAEFEALMDAAAYKKHTE 149          
BLAST of NO08G03730 vs. NCBI_GenBank
Match: WP_092809222.1 (glycine cleavage system protein GcvH [Afifella marina] >SCZ22467.1 glycine cleavage system H protein [Afifella marina DSM 2698])

HSP 1 Score: 154.1 bits (388), Expect = 4.700e-34
Identity = 75/121 (61.98%), Postives = 93/121 (76.86%), Query Frame = 0
Query:   81 STRYATSHEWVKLDGDVATVGITGFAAKALGDVVYVDLPEVGASFAKGDPFGSVESVKAASDVYAPISGEIVESNAALSDDPGNVNKAAETDAWFAKFKVTDKSEFDALMDSEAYKAHTEK 202
            +TRY+  HEWV+LDGD AT+GIT FAA+ LGDVV+V+LPE G + AKGD    VESVKAAS+VYAP+SGE+ ++NAAL D P  VN+A E D WF + K++DKSE D LMD  AYKA  E+
Sbjct:    2 TTRYSKEHEWVRLDGDTATIGITPFAAEQLGDVVFVELPEKGKTIAKGDEVAVVESVKAASEVYAPVSGEVTDANAALEDAPQTVNEAPEGDGWFFRVKLSDKSELDGLMDEAAYKAFCEE 122          
BLAST of NO08G03730 vs. NCBI_GenBank
Match: PKP80487.1 (glycine cleavage system protein H [Alphaproteobacteria bacterium HGW-Alphaproteobacteria-18])

HSP 1 Score: 153.3 bits (386), Expect = 8.100e-34
Identity = 76/120 (63.33%), Postives = 90/120 (75.00%), Query Frame = 0
Query:   81 STRYATSHEWVKLDGDVATVGITGFAAKALGDVVYVDLPEVGASFAKGDPFGSVESVKAASDVYAPISGEIVESNAALSDDPGNVNKAAETDAWFAKFKVTDKSEFDALMDSEAYKAHTE 201
            +T Y   HEWV+++GD  TVGIT +AA  LGDVVYV+LPE GAS AKGD F  VESVKAASDVYAPISG ++ESN  L+D P  V++AAETDAWF + K+ D SE D LMD  AY A+ E
Sbjct:    2 TTYYTKDHEWVRVEGDTGTVGITTYAAGQLGDVVYVELPEAGASLAKGDGFAVVESVKAASDVYAPISGAVLESNTGLADAPEKVSEAAETDAWFVRIKIADTSELDGLMDLAAYTAYCE 121          
BLAST of NO08G03730 vs. NCBI_GenBank
Match: GAX14280.1 (glycine cleavage system H protein [Fistulifera solaris])

HSP 1 Score: 152.9 bits (385), Expect = 1.100e-33
Identity = 81/152 (53.29%), Postives = 107/152 (70.39%), Query Frame = 0
Query:   53 LAIATRQLARRVAFTPAARQLNITR---TLASTRYATSHEWVKLDGDVATVGITGFAAKALGDVVYVDLPEVGASFAKGDPFGSVESVKAASDVYAPISGEIVESNAALSDDPGNVNKAAETDAWFAKFKVTDKSEFDALMDSEAYKAHTEK 202
            ++  TR +ARR +F   AR   +T       S+ +  +HE+VK+DG + T GIT FA  ALGD+V+VDLPEVG  FAKG+ FGSVESVKAASDVYAP+SG +VE N  LSD+PG VN  AE  AWF K ++ D++E  +L+ ++AYKAH E+
Sbjct:    4 VSFLTRTVARR-SFDSVARMSRVTHLGGVRFSSYFTPAHEYVKVDGKIGTCGITDFAQAALGDIVFVDLPEVGDEFAKGESFGSVESVKAASDVYAPVSGTVVEVNEVLSDEPGMVNSEAEGKAWFVKIEIKDEAELKSLLSADAYKAHCEE 154          
BLAST of NO08G03730 vs. NCBI_GenBank
Match: GAX20044.1 (glycine cleavage system H protein [Fistulifera solaris])

HSP 1 Score: 151.8 bits (382), Expect = 2.300e-33
Identity = 81/152 (53.29%), Postives = 107/152 (70.39%), Query Frame = 0
Query:   53 LAIATRQLARRVAFTPAARQLNITR---TLASTRYATSHEWVKLDGDVATVGITGFAAKALGDVVYVDLPEVGASFAKGDPFGSVESVKAASDVYAPISGEIVESNAALSDDPGNVNKAAETDAWFAKFKVTDKSEFDALMDSEAYKAHTEK 202
            ++  TR +ARR +F   AR   +T       S+ +  +HE+VK+DG + T GIT FA  ALGD+V+VDLPEVG  FAKG+ FGSVESVKAASDVYAP+SG +VE N  LSD+PG VN  AE  AWF K ++ D++E  +LM+++AYK H E+
Sbjct:    4 VSFLTRTVARR-SFDSVARMSRVTHLGGARFSSYFTPAHEYVKVDGKIGTCGITDFAQAALGDIVFVDLPEVGDEFAKGESFGSVESVKAASDVYAPVSGTVVEVNEILSDEPGMVNSEAEGKAWFVKIEMKDEAELKSLMNADAYKTHCEE 154          
BLAST of NO08G03730 vs. NCBI_GenBank
Match: OYW89159.1 (glycine cleavage system protein H [Hyphomonas sp. 32-62-5] >OZB19059.1 glycine cleavage system protein H [Hyphomonas sp. 34-62-18])

HSP 1 Score: 151.4 bits (381), Expect = 3.100e-33
Identity = 74/120 (61.67%), Postives = 87/120 (72.50%), Query Frame = 0
Query:   81 STRYATSHEWVKLDGDVATVGITGFAAKALGDVVYVDLPEVGASFAKGDPFGSVESVKAASDVYAPISGEIVESNAALSDDPGNVNKAAETDAWFAKFKVTDKSEFDALMDSEAYKAHTE 201
            +T Y   HEW++++GD  TVGIT +AA  LGDVVYV+LPE GA  AKGD F  VESVKAASDVYAPISG +VE+N  LSD P  VN+AAE DAWF + K+ D  E D LMD  AY A+ E
Sbjct:    2 TTYYTKDHEWIRVEGDTGTVGITAYAAGQLGDVVYVELPESGAKIAKGDGFAVVESVKAASDVYAPISGSVVEANTGLSDAPEKVNEAAEGDAWFVRIKIADTGELDGLMDEAAYTAYCE 121          
BLAST of NO08G03730 vs. NCBI_GenBank
Match: WP_087119808.1 (glycine cleavage system protein GcvH [Brevundimonas sp. SH203] >GAW40657.1 Glycine cleavage system H protein [Brevundimonas sp. SH203])

HSP 1 Score: 151.0 bits (380), Expect = 4.000e-33
Identity = 74/115 (64.35%), Postives = 89/115 (77.39%), Query Frame = 0
Query:   83 RYATSHEWVKLDGDVATVGITGFAAKALGDVVYVDLPEVGASFAKGDPFGSVESVKAASDVYAPISGEIVESNAALSDDPGNVNKAAETDAWFAKFKVTDKSEFDALMDSEAYKA 198
            ++   HEWV LDGD+ATVGI+  AA ALGDVV+V++PEVG + +KGD F  VESVKAASDVYAP+SGE++E+N ALS  P  VN AAE D WFAK KV+D +E DALMD  AY A
Sbjct:    2 KFTKDHEWVSLDGDIATVGISKHAADALGDVVFVEVPEVGKTVSKGDSFAVVESVKAASDVYAPVSGEVIEANDALSTAPETVNSAAEADGWFAKIKVSDAAELDALMDQAAYDA 116          
BLAST of NO08G03730 vs. NCBI_GenBank
Match: WP_067220684.1 (glycine cleavage system protein GcvH [Stappia indica])

HSP 1 Score: 150.6 bits (379), Expect = 5.200e-33
Identity = 72/120 (60.00%), Postives = 91/120 (75.83%), Query Frame = 0
Query:   81 STRYATSHEWVKLDGDVATVGITGFAAKALGDVVYVDLPEVGASFAKGDPFGSVESVKAASDVYAPISGEIVESNAALSDDPGNVNKAAETDAWFAKFKVTDKSEFDALMDSEAYKAHTE 201
            STRY   HEW+ ++GDVATVGIT +A + LGDVV+V+LPEVG   +KGD    VESVKAAS+VYAP+ GEIVE+N  L+D+PG VN+  E  AWF K +++D S+ D+LMD  AYKAH E
Sbjct:    2 STRYTEDHEWITVEGDVATVGITDYAQQQLGDVVFVELPEVGRKVSKGDEAAVVESVKAASEVYAPLDGEIVEANGVLADEPGKVNEDPEGAAWFVKIRLSDTSQLDSLMDEAAYKAHVE 121          
BLAST of NO08G03730 vs. NCBI_GenBank
Match: WP_035598119.1 (glycine cleavage system protein GcvH [Hyphomonas polymorpha] >KCZ98298.1 glycine cleavage system H protein [Hyphomonas polymorpha PS728])

HSP 1 Score: 150.2 bits (378), Expect = 6.800e-33
Identity = 73/120 (60.83%), Postives = 87/120 (72.50%), Query Frame = 0
Query:   81 STRYATSHEWVKLDGDVATVGITGFAAKALGDVVYVDLPEVGASFAKGDPFGSVESVKAASDVYAPISGEIVESNAALSDDPGNVNKAAETDAWFAKFKVTDKSEFDALMDSEAYKAHTE 201
            +T Y   HEW++++GD  TVGIT +AA  LGDVVYV+LPE GA  AKGD F  VESVKAASDVYAPISG +VE+N  L+D P  VN+AAE DAWF + K+ D  E D LMD  AY A+ E
Sbjct:    2 TTYYTKDHEWIRVEGDTGTVGITAYAAGQLGDVVYVELPESGAKIAKGDGFAVVESVKAASDVYAPISGSVVEANTGLADAPEKVNEAAEGDAWFVRIKIADAGELDGLMDEAAYTAYCE 121          
BLAST of NO08G03730 vs. NCBI_GenBank
Match: WP_067339736.1 (glycine cleavage system protein GcvH [Stappia indica] >SOC09660.1 glycine cleavage system H protein [Stappia indica])

HSP 1 Score: 150.2 bits (378), Expect = 6.800e-33
Identity = 72/120 (60.00%), Postives = 90/120 (75.00%), Query Frame = 0
Query:   81 STRYATSHEWVKLDGDVATVGITGFAAKALGDVVYVDLPEVGASFAKGDPFGSVESVKAASDVYAPISGEIVESNAALSDDPGNVNKAAETDAWFAKFKVTDKSEFDALMDSEAYKAHTE 201
            STRY   HEW+ ++GDVATVGIT +A + LGDVV+V+LPEVG   +KGD    VESVKAAS+VYAP+ GEIVE+N  L+D+PG VN+  E  AWF K ++ D S+ D+LMD  AYKAH E
Sbjct:    2 STRYTEDHEWITVEGDVATVGITDYAQQQLGDVVFVELPEVGRKVSKGDEAAVVESVKAASEVYAPLDGEIVEANGVLADEPGKVNEDPEGAAWFVKIRLADTSQLDSLMDEAAYKAHVE 121          
The following BLAST results are available for this feature:
BLAST of NO08G03730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854003.12.500e-5980.54glycine cleavage system h protein [Nannochloropsis... [more]
WP_092809222.14.700e-3461.98glycine cleavage system protein GcvH [Afifella mar... [more]
PKP80487.18.100e-3463.33glycine cleavage system protein H [Alphaproteobact... [more]
GAX14280.11.100e-3353.29glycine cleavage system H protein [Fistulifera sol... [more]
GAX20044.12.300e-3353.29glycine cleavage system H protein [Fistulifera sol... [more]
OYW89159.13.100e-3361.67glycine cleavage system protein H [Hyphomonas sp. ... [more]
WP_087119808.14.000e-3364.35glycine cleavage system protein GcvH [Brevundimona... [more]
WP_067220684.15.200e-3360.00glycine cleavage system protein GcvH [Stappia indi... [more]
WP_035598119.16.800e-3360.83glycine cleavage system protein GcvH [Hyphomonas p... [more]
WP_067339736.16.800e-3360.00glycine cleavage system protein GcvH [Stappia indi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008633NSK008633Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03730.1NO08G03730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583132gene_3707Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100018g64gene3700Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03730.1NO08G03730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03730 ID=NO08G03730|Name=NO08G03730|organism=Nannochloropsis oceanica|type=gene|length=1215bp
TCGACGGCGAGAGAGCTTCTTGTTGCCTAGCATTTGCATCGTCCGTCTCG
TGTAAACTCTCGATCATGGCATTTCTAAGCTTTACCCAAATGCTGTGATC
TAAGTCAAAGTGACTTGACTTGTATGAGCATGCCTTCGACCGCTTCTCTT
CATTCCAGCCTCCTAGCTATGTGTATATCAGACACTCACCATCCTCAATC
CTCACCATCATCCTTGCACTCAACACCAGCGCCCAAACAAACCAGGGGCA
CCGTCTCGACGACTCGCCGTTGTATTATGCTCGCCATAGCCACCCGCCAA
TTGGCACGCCGTGTCGCTTTCACGgtaagtttttggtgtcgacttatcgt
cgtcgtcatcgtagtcgttgtatttcccatccgcgcccctatgcatacga
tgttaggaacgatgtgatgctctctccacatctctgtacctgtgcgcata
tgccaaaaaaacatgccaatacactttctgcatcatcacgcaaattattt
acgtccctctttcccctctttgtccatgctttcgtccatccccctttatg
acttccaccgcagCCCGCCGCTCGCCAACTCAACATCACCCGCACCCTGG
CCTCCACTCGGTACGCAACCTCTCACGAATGGGTGAAGCTGGATGGGGAC
GTTGCGACGGTGGGCATCACGGGCTTTGCGGCGAAGGCATTGGGTGATGT
GGTGTACGTGGACTTGCCCGAGGTGGGGGCGTCGTTCGCCAAGGGgtaag
tccatcaagaatgaagatgagatcacaagcgaacctccttctcccccctt
ccgccccacctttgcccaacgctcccacctctcctcatatttgattgaag
tgcgttgtatttgttgtgaagccttgcaaacgattttgaggaagggaaaa
tgacggaaagtcatggctgcttctcaccctcttaccacatccctccctcc
gtccctcctcccttcccccttgttccagCGACCCGTTCGGATCCGTGGAA
TCCGTCAAAGCAGCCAGTGACGTGTACGCACCCATCTCTGGAGAGATTGT
TGAGTCCAACGCTGCTTTGTCTGACGACCCGGGGAATGTGAACAAGGCCG
CCGAGACTGATGCGTGGTTTGCCAAGTTTAAGGTTACGGATAAGAGCGAG
TTTGATGCTTTAATGGACTCAGAGGCATACAAGGCACACACCGAGAAGTA
GAGGCAGAGGGGGAG
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protein sequence of NO08G03730.1

>NO08G03730.1-protein ID=NO08G03730.1-protein|Name=NO08G03730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MSMPSTASLHSSLLAMCISDTHHPQSSPSSLHSTPAPKQTRGTVSTTRRC
IMLAIATRQLARRVAFTPAARQLNITRTLASTRYATSHEWVKLDGDVATV
GITGFAAKALGDVVYVDLPEVGASFAKGDPFGSVESVKAASDVYAPISGE
IVESNAALSDDPGNVNKAAETDAWFAKFKVTDKSEFDALMDSEAYKAHTE
K*
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Synonyms
Publications