NO08G03730.1, NO08G03730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03730.1
Unique NameNO08G03730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length743
Alignment locationchr8:1051331..1052545 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1051331..1052545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO08G03730.1 vs.
Match: XP_005854003.1 (glycine cleavage system h protein [Nannochloropsis gaditana CCMP526]; EKU22358.1 glycine cleavage system h protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 238.0 bits (606), Expect = 2.500e-59
Identity = 120/149 (80.54%), Postives = 134/149 (89.93%), Query Frame = 0 
Query:   52 MLAIATRQLARRVAFTPAARQLNITRTLASTRYATSHEWVKLDGDVATVGITGFAAKALGDVVYVDLPEVGASFAKGDPFGSVESVKAASDVYAPISGEIVESNAALSDDPGNVNKAAETDAWFAKFKVTDKSEFDALMDSEAYKAHTE 201
            MLA ATR +ARR+A +    Q  + RTLA+TRYATSHEWVKLDGD+ATVGIT FAAKALGDVVYVDLPEVGASF+KGDPFGSVESVKAASDVYAP+SGEI+ESNA+LS+DPGNVN AAETDAWF KFKVTDK+EF+ALMD+ AYK HTE
Sbjct:    1 MLATATRHVARRIACSSTVFQPTLRRTLATTRYATSHEWVKLDGDIATVGITDFAAKALGDVVYVDLPEVGASFSKGDPFGSVESVKAASDVYAPVSGEIIESNASLSEDPGNVNNAAETDAWFTKFKVTDKAEFEALMDAAAYKKHTE 149
The following BLAST results are available for this feature:
BLAST of NO08G03730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854003.12.500e-5980.54glycine cleavage system h protein [Nannochloropsis... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03730NO08G03730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03730.1NO08G03730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03730.1.cds1NO08G03730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03730.1.cds2NO08G03730.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03730.1.cds3NO08G03730.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03730.1 ID=NO08G03730.1|Name=NO08G03730.1|organism=Nannochloropsis oceanica|type=mRNA|length=743bp
TCGACGGCGAGAGAGCTTCTTGTTGCCTAGCATTTGCATCGTCCGTCTCG
TGTAAACTCTCGATCATGGCATTTCTAAGCTTTACCCAAATGCTGTGATC
TAAGTCAAAGTGACTTGACTTGTATGAGCATGCCTTCGACCGCTTCTCTT
CATTCCAGCCTCCTAGCTATGTGTATATCAGACACTCACCATCCTCAATC
CTCACCATCATCCTTGCACTCAACACCAGCGCCCAAACAAACCAGGGGCA
CCGTCTCGACGACTCGCCGTTGTATTATGCTCGCCATAGCCACCCGCCAA
TTGGCACGCCGTGTCGCTTTCACGCCCGCCGCTCGCCAACTCAACATCAC
CCGCACCCTGGCCTCCACTCGGTACGCAACCTCTCACGAATGGGTGAAGC
TGGATGGGGACGTTGCGACGGTGGGCATCACGGGCTTTGCGGCGAAGGCA
TTGGGTGATGTGGTGTACGTGGACTTGCCCGAGGTGGGGGCGTCGTTCGC
CAAGGGCGACCCGTTCGGATCCGTGGAATCCGTCAAAGCAGCCAGTGACG
TGTACGCACCCATCTCTGGAGAGATTGTTGAGTCCAACGCTGCTTTGTCT
GACGACCCGGGGAATGTGAACAAGGCCGCCGAGACTGATGCGTGGTTTGC
CAAGTTTAAGGTTACGGATAAGAGCGAGTTTGATGCTTTAATGGACTCAG
AGGCATACAAGGCACACACCGAGAAGTAGAGGCAGAGGGGGAG
back to top

protein sequence of NO08G03730.1

>NO08G03730.1-protein ID=NO08G03730.1-protein|Name=NO08G03730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MSMPSTASLHSSLLAMCISDTHHPQSSPSSLHSTPAPKQTRGTVSTTRRC
IMLAIATRQLARRVAFTPAARQLNITRTLASTRYATSHEWVKLDGDVATV
GITGFAAKALGDVVYVDLPEVGASFAKGDPFGSVESVKAASDVYAPISGE
IVESNAALSDDPGNVNKAAETDAWFAKFKVTDKSEFDALMDSEAYKAHTE
K*
back to top

mRNA from alignment at chr8:1051331..1052545+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03730.1 ID=NO08G03730.1|Name=NO08G03730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1215bp|location=Sequence derived from alignment at chr8:1051331..1052545+ (Nannochloropsis oceanica)
TCGACGGCGAGAGAGCTTCTTGTTGCCTAGCATTTGCATCGTCCGTCTCG
TGTAAACTCTCGATCATGGCATTTCTAAGCTTTACCCAAATGCTGTGATC
TAAGTCAAAGTGACTTGACTTGTATGAGCATGCCTTCGACCGCTTCTCTT
CATTCCAGCCTCCTAGCTATGTGTATATCAGACACTCACCATCCTCAATC
CTCACCATCATCCTTGCACTCAACACCAGCGCCCAAACAAACCAGGGGCA
CCGTCTCGACGACTCGCCGTTGTATTATGCTCGCCATAGCCACCCGCCAA
TTGGCACGCCGTGTCGCTTTCACGGTAAGTTTTTGGTGTCGACTTATCGT
CGTCGTCATCGTAGTCGTTGTATTTCCCATCCGCGCCCCTATGCATACGA
TGTTAGGAACGATGTGATGCTCTCTCCACATCTCTGTACCTGTGCGCATA
TGCCAAAAAAACATGCCAATACACTTTCTGCATCATCACGCAAATTATTT
ACGTCCCTCTTTCCCCTCTTTGTCCATGCTTTCGTCCATCCCCCTTTATG
ACTTCCACCGCAGCCCGCCGCTCGCCAACTCAACATCACCCGCACCCTGG
CCTCCACTCGGTACGCAACCTCTCACGAATGGGTGAAGCTGGATGGGGAC
GTTGCGACGGTGGGCATCACGGGCTTTGCGGCGAAGGCATTGGGTGATGT
GGTGTACGTGGACTTGCCCGAGGTGGGGGCGTCGTTCGCCAAGGGGTAAG
TCCATCAAGAATGAAGATGAGATCACAAGCGAACCTCCTTCTCCCCCCTT
CCGCCCCACCTTTGCCCAACGCTCCCACCTCTCCTCATATTTGATTGAAG
TGCGTTGTATTTGTTGTGAAGCCTTGCAAACGATTTTGAGGAAGGGAAAA
TGACGGAAAGTCATGGCTGCTTCTCACCCTCTTACCACATCCCTCCCTCC
GTCCCTCCTCCCTTCCCCCTTGTTCCAGCGACCCGTTCGGATCCGTGGAA
TCCGTCAAAGCAGCCAGTGACGTGTACGCACCCATCTCTGGAGAGATTGT
TGAGTCCAACGCTGCTTTGTCTGACGACCCGGGGAATGTGAACAAGGCCG
CCGAGACTGATGCGTGGTTTGCCAAGTTTAAGGTTACGGATAAGAGCGAG
TTTGATGCTTTAATGGACTCAGAGGCATACAAGGCACACACCGAGAAGTA
GAGGCAGAGGGGGAG
back to top

Coding sequence (CDS) from alignment at chr8:1051331..1052545+

>NO08G03730.1 ID=NO08G03730.1|Name=NO08G03730.1|organism=Nannochloropsis oceanica|type=CDS|length=606bp|location=Sequence derived from alignment at chr8:1051331..1052545+ (Nannochloropsis oceanica)
ATGAGCATGCCTTCGACCGCTTCTCTTCATTCCAGCCTCCTAGCTATGTG
TATATCAGACACTCACCATCCTCAATCCTCACCATCATCCTTGCACTCAA
CACCAGCGCCCAAACAAACCAGGGGCACCGTCTCGACGACTCGCCGTTGT
ATTATGCTCGCCATAGCCACCCGCCAATTGGCACGCCGTGTCGCTTTCAC
GCCCGCCGCTCGCCAACTCAACATCACCCGCACCCTGGCCTCCACTCGGT
ACGCAACCTCTCACGAATGGGTGAAGCTGGATGGGGACGTTGCGACGGTG
GGCATCACGGGCTTTGCGGCGAAGGCATTGGGTGATGTGGTGTACGTGGA
CTTGCCCGAGGTGGGGGCGTCGTTCGCCAAGGGCGACCCGTTCGGATCCG
TGGAATCCGTCAAAGCAGCCAGTGACGTGTACGCACCCATCTCTGGAGAG
ATTGTTGAGTCCAACGCTGCTTTGTCTGACGACCCGGGGAATGTGAACAA
GGCCGCCGAGACTGATGCGTGGTTTGCCAAGTTTAAGGTTACGGATAAGA
GCGAGTTTGATGCTTTAATGGACTCAGAGGCATACAAGGCACACACCGAG
AAGTAG
back to top
Synonyms
Publications