NO08G03600, NO08G03600 (gene) Nannochloropsis oceanica

Overview
NameNO08G03600
Unique NameNO08G03600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1950
Alignment locationchr8:1013558..1015507 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1013558..1015507 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR015797NUDIX_hydrolase_dom-like
Homology
The following BLAST results are available for this feature:
BLAST of NO08G03600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008641NSK008641Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03600.1NO08G03600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583080gene_3695Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03600.1NO08G03600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03600 ID=NO08G03600|Name=NO08G03600|organism=Nannochloropsis oceanica|type=gene|length=1950bp
ATGGCCAGCATCCTCGACCATCCACCCAACTCTATAGTACAACCACCTAC
ACGGTTGCGACAAGTTAAAGATGGAGATGGTTTCTGTAATGATACCCCTT
CCGTAGAAGAGAGCCTTGCGGCGCTCACGCTTCACGACGACGAGGTCTAC
CAGACTGCCTCCTCTTCGACGGACGACGACGACAACAACGCTGCGGTAGG
CATGGGAAAGGCTGAGCGCAAACAGCGGCAAAAAGAGAAGAAGAAAGCGG
CAATCGCACTTGTTGCGACGTCTGCCGCTGGTTCAAAGAAAGCGGTGACG
ACGAATGACGCCCAAGCTGCTGCGGGGCATGTGTCCTCCTATTCATTTGA
AGCCTCCTGCACCATGATAGTCGATGCGGCCACGGCAGTGGCAACGATAC
CGAGTAAAACGAAATTAAAACCTAGTGGCAGACCCACAACTTTCTCCTCA
GATGCTTCCGCCACCGTCGCTTCCGCCCCCGCTGTCGACTCCACCACCAC
AACAACCACAACGGACAGCAGTATGGGTCCCACAAAAGTCCGTAAACCAC
GCCACAAAAAACAACCCAAATTTCTCTCCTCCTCATCCTCTTCATCGGCA
ACCCAACCCAACCCCAGCCTCTTCTCCGACCTATCCATTCTTCAAAAAAT
AACCAACAAACAAGCCGAAATCATCGAAGTCCACACCCCTAATTGCTCAT
GCCGAGGTGCGTTTTGGCTCAAGAATATGGAAGCGTCCTCCTTACTTGGT
TACGTCGCTGTTACCAAAGGCACTGATGGCGGTCGGATCCGCCCAGCCCT
CATCCTGGTTGCCGCAGATCATAGCCTGGAAGGGGAACGACAAGCAGTAG
CAACCATGAAGGCAACAGCAATTAAATACTCCAGCTTGCGTCCCGCGCGA
TGTGGCCGGACACAAACCCCCGTCCTCCCTCCCGCCCTTCCTACCTCCTC
TCCTCACCCTCCCTTGCGCAGTGGCTTCGTCCGCTCTTCCCACTTGCCCA
CCTCCACCCTCCCTTCCTCCTCCACCACCCTCCCTCCCTGGTTCCTCCAC
GGCGCTGCTGTCATCGTCGGGGAATACACGCACCTCACCTCCCTCGCCCT
TCACTACGGGTTCCGCCCGGAGGTCAATCGTCAATCAGACGACGAAGCTT
GTTGCCTCCTCGTTGCCTCCCTTCCTCCCTCCTCCGCCTTCCGTTCCACC
TCCTCCTGTCTGACCACCATCACCGAATCCCTCCTCTCCTCTCTTGCCTC
CCATGGCCCGCCCTCGGTAGCTCCCAAGGAAGAAGTAACAATGCTCGGGC
ACCATTTGCAGACGATTCTACGGCGGGGTAATCTCACCCGAGAGAGGGTG
TCTCAGGAGGCTTGGAAGAAGGAAAAGCACATCATGCGCGAGCCCGCCCT
GCTGGCAATTGGACAGGAGTGGCCCGAAAGGTTTACGATTGACGTGTTTG
GAGGTAAGAGGGAGGTAGGGGAGAGTAGCTTGCAAGCGGCAGTGAGGGAG
ACGAAGGAGGAAAGTGGGGACTGTGTGTGTCTGGAGCAGGAAGAGGAGGA
GGAGAGAGGGAAGGGAGGAAGAAGATATGTGCGGATACCGGGTTTGGATT
TCTGGGATGAAAGCATGGCTTTTTGGGGTTTCCTTTGTAGAGGGGAGGGA
GTGGGAGAGTGGGAGAAGGAGGGAGGGGGGCATGGAAATTTGGCGGCAAG
TGGTGGTGGAGGTGGAGGTGGACAGACCTGGAATGGAAGAGGAGGAGGGA
TAGGTGGTGGTGGAGGAGGAGGAAAAGGAGGAAGTAGTCGCTTTGGGGCG
ATGAGAGGAGGTCGTGGGGTCCGAGGAGGGAGGGGAAGAAGAAGTGAGAG
GGGCATGTTTGCTTCTGTTGCCAGTGGTGATCGTGAGGAGCACCTAGGAG
GAAGTAGAAGGGTGGGTGGGGTAGAAGGACGAGGACGACAACGAGGTTGA
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protein sequence of NO08G03600.1

>NO08G03600.1-protein ID=NO08G03600.1-protein|Name=NO08G03600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=650bp
MASILDHPPNSIVQPPTRLRQVKDGDGFCNDTPSVEESLAALTLHDDEVY
QTASSSTDDDDNNAAVGMGKAERKQRQKEKKKAAIALVATSAAGSKKAVT
TNDAQAAAGHVSSYSFEASCTMIVDAATAVATIPSKTKLKPSGRPTTFSS
DASATVASAPAVDSTTTTTTTDSSMGPTKVRKPRHKKQPKFLSSSSSSSA
TQPNPSLFSDLSILQKITNKQAEIIEVHTPNCSCRGAFWLKNMEASSLLG
YVAVTKGTDGGRIRPALILVAADHSLEGERQAVATMKATAIKYSSLRPAR
CGRTQTPVLPPALPTSSPHPPLRSGFVRSSHLPTSTLPSSSTTLPPWFLH
GAAVIVGEYTHLTSLALHYGFRPEVNRQSDDEACCLLVASLPPSSAFRST
SSCLTTITESLLSSLASHGPPSVAPKEEVTMLGHHLQTILRRGNLTRERV
SQEAWKKEKHIMREPALLAIGQEWPERFTIDVFGGKREVGESSLQAAVRE
TKEESGDCVCLEQEEEEERGKGGRRYVRIPGLDFWDESMAFWGFLCRGEG
VGEWEKEGGGHGNLAASGGGGGGGQTWNGRGGGIGGGGGGGKGGSSRFGA
MRGGRGVRGGRGRRSERGMFASVASGDREEHLGGSRRVGGVEGRGRQRG*
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Synonyms
Publications