NO08G03600.1, NO08G03600.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G03600.1
Unique Name	NO08G03600.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1950
Alignment location	chr8:1013558..1015507 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:1013558..1015507 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO08G03600.1 vs.

BLAST of NO08G03600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO08G03600	NO08G03600	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO08G03600.1	NO08G03600.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO08G03600.1.cds1	NO08G03600.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:1013558..1015507+
coding sequence from alignment at chr8:1013558..1015507+

mRNA sequence

>NO08G03600.1 ID=NO08G03600.1|Name=NO08G03600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1950bp
ATGGCCAGCATCCTCGACCATCCACCCAACTCTATAGTACAACCACCTAC
ACGGTTGCGACAAGTTAAAGATGGAGATGGTTTCTGTAATGATACCCCTT
CCGTAGAAGAGAGCCTTGCGGCGCTCACGCTTCACGACGACGAGGTCTAC
CAGACTGCCTCCTCTTCGACGGACGACGACGACAACAACGCTGCGGTAGG
CATGGGAAAGGCTGAGCGCAAACAGCGGCAAAAAGAGAAGAAGAAAGCGG
CAATCGCACTTGTTGCGACGTCTGCCGCTGGTTCAAAGAAAGCGGTGACG
ACGAATGACGCCCAAGCTGCTGCGGGGCATGTGTCCTCCTATTCATTTGA
AGCCTCCTGCACCATGATAGTCGATGCGGCCACGGCAGTGGCAACGATAC
CGAGTAAAACGAAATTAAAACCTAGTGGCAGACCCACAACTTTCTCCTCA
GATGCTTCCGCCACCGTCGCTTCCGCCCCCGCTGTCGACTCCACCACCAC
AACAACCACAACGGACAGCAGTATGGGTCCCACAAAAGTCCGTAAACCAC
GCCACAAAAAACAACCCAAATTTCTCTCCTCCTCATCCTCTTCATCGGCA
ACCCAACCCAACCCCAGCCTCTTCTCCGACCTATCCATTCTTCAAAAAAT
AACCAACAAACAAGCCGAAATCATCGAAGTCCACACCCCTAATTGCTCAT
GCCGAGGTGCGTTTTGGCTCAAGAATATGGAAGCGTCCTCCTTACTTGGT
TACGTCGCTGTTACCAAAGGCACTGATGGCGGTCGGATCCGCCCAGCCCT
CATCCTGGTTGCCGCAGATCATAGCCTGGAAGGGGAACGACAAGCAGTAG
CAACCATGAAGGCAACAGCAATTAAATACTCCAGCTTGCGTCCCGCGCGA
TGTGGCCGGACACAAACCCCCGTCCTCCCTCCCGCCCTTCCTACCTCCTC
TCCTCACCCTCCCTTGCGCAGTGGCTTCGTCCGCTCTTCCCACTTGCCCA
CCTCCACCCTCCCTTCCTCCTCCACCACCCTCCCTCCCTGGTTCCTCCAC
GGCGCTGCTGTCATCGTCGGGGAATACACGCACCTCACCTCCCTCGCCCT
TCACTACGGGTTCCGCCCGGAGGTCAATCGTCAATCAGACGACGAAGCTT
GTTGCCTCCTCGTTGCCTCCCTTCCTCCCTCCTCCGCCTTCCGTTCCACC
TCCTCCTGTCTGACCACCATCACCGAATCCCTCCTCTCCTCTCTTGCCTC
CCATGGCCCGCCCTCGGTAGCTCCCAAGGAAGAAGTAACAATGCTCGGGC
ACCATTTGCAGACGATTCTACGGCGGGGTAATCTCACCCGAGAGAGGGTG
TCTCAGGAGGCTTGGAAGAAGGAAAAGCACATCATGCGCGAGCCCGCCCT
GCTGGCAATTGGACAGGAGTGGCCCGAAAGGTTTACGATTGACGTGTTTG
GAGGTAAGAGGGAGGTAGGGGAGAGTAGCTTGCAAGCGGCAGTGAGGGAG
ACGAAGGAGGAAAGTGGGGACTGTGTGTGTCTGGAGCAGGAAGAGGAGGA
GGAGAGAGGGAAGGGAGGAAGAAGATATGTGCGGATACCGGGTTTGGATT
TCTGGGATGAAAGCATGGCTTTTTGGGGTTTCCTTTGTAGAGGGGAGGGA
GTGGGAGAGTGGGAGAAGGAGGGAGGGGGGCATGGAAATTTGGCGGCAAG
TGGTGGTGGAGGTGGAGGTGGACAGACCTGGAATGGAAGAGGAGGAGGGA
TAGGTGGTGGTGGAGGAGGAGGAAAAGGAGGAAGTAGTCGCTTTGGGGCG
ATGAGAGGAGGTCGTGGGGTCCGAGGAGGGAGGGGAAGAAGAAGTGAGAG
GGGCATGTTTGCTTCTGTTGCCAGTGGTGATCGTGAGGAGCACCTAGGAG
GAAGTAGAAGGGTGGGTGGGGTAGAAGGACGAGGACGACAACGAGGTTGA

protein sequence of NO08G03600.1

>NO08G03600.1-protein ID=NO08G03600.1-protein|Name=NO08G03600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=650bp
MASILDHPPNSIVQPPTRLRQVKDGDGFCNDTPSVEESLAALTLHDDEVY
QTASSSTDDDDNNAAVGMGKAERKQRQKEKKKAAIALVATSAAGSKKAVT
TNDAQAAAGHVSSYSFEASCTMIVDAATAVATIPSKTKLKPSGRPTTFSS
DASATVASAPAVDSTTTTTTTDSSMGPTKVRKPRHKKQPKFLSSSSSSSA
TQPNPSLFSDLSILQKITNKQAEIIEVHTPNCSCRGAFWLKNMEASSLLG
YVAVTKGTDGGRIRPALILVAADHSLEGERQAVATMKATAIKYSSLRPAR
CGRTQTPVLPPALPTSSPHPPLRSGFVRSSHLPTSTLPSSSTTLPPWFLH
GAAVIVGEYTHLTSLALHYGFRPEVNRQSDDEACCLLVASLPPSSAFRST
SSCLTTITESLLSSLASHGPPSVAPKEEVTMLGHHLQTILRRGNLTRERV
SQEAWKKEKHIMREPALLAIGQEWPERFTIDVFGGKREVGESSLQAAVRE
TKEESGDCVCLEQEEEEERGKGGRRYVRIPGLDFWDESMAFWGFLCRGEG
VGEWEKEGGGHGNLAASGGGGGGGQTWNGRGGGIGGGGGGGKGGSSRFGA
MRGGRGVRGGRGRRSERGMFASVASGDREEHLGGSRRVGGVEGRGRQRG*

mRNA from alignment at chr8:1013558..1015507+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO08G03600.1 ID=NO08G03600.1|Name=NO08G03600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1950bp|location=Sequence derived from alignment at chr8:1013558..1015507+ (Nannochloropsis oceanica)
ATGGCCAGCATCCTCGACCATCCACCCAACTCTATAGTACAACCACCTAC
ACGGTTGCGACAAGTTAAAGATGGAGATGGTTTCTGTAATGATACCCCTT
CCGTAGAAGAGAGCCTTGCGGCGCTCACGCTTCACGACGACGAGGTCTAC
CAGACTGCCTCCTCTTCGACGGACGACGACGACAACAACGCTGCGGTAGG
CATGGGAAAGGCTGAGCGCAAACAGCGGCAAAAAGAGAAGAAGAAAGCGG
CAATCGCACTTGTTGCGACGTCTGCCGCTGGTTCAAAGAAAGCGGTGACG
ACGAATGACGCCCAAGCTGCTGCGGGGCATGTGTCCTCCTATTCATTTGA
AGCCTCCTGCACCATGATAGTCGATGCGGCCACGGCAGTGGCAACGATAC
CGAGTAAAACGAAATTAAAACCTAGTGGCAGACCCACAACTTTCTCCTCA
GATGCTTCCGCCACCGTCGCTTCCGCCCCCGCTGTCGACTCCACCACCAC
AACAACCACAACGGACAGCAGTATGGGTCCCACAAAAGTCCGTAAACCAC
GCCACAAAAAACAACCCAAATTTCTCTCCTCCTCATCCTCTTCATCGGCA
ACCCAACCCAACCCCAGCCTCTTCTCCGACCTATCCATTCTTCAAAAAAT
AACCAACAAACAAGCCGAAATCATCGAAGTCCACACCCCTAATTGCTCAT
GCCGAGGTGCGTTTTGGCTCAAGAATATGGAAGCGTCCTCCTTACTTGGT
TACGTCGCTGTTACCAAAGGCACTGATGGCGGTCGGATCCGCCCAGCCCT
CATCCTGGTTGCCGCAGATCATAGCCTGGAAGGGGAACGACAAGCAGTAG
CAACCATGAAGGCAACAGCAATTAAATACTCCAGCTTGCGTCCCGCGCGA
TGTGGCCGGACACAAACCCCCGTCCTCCCTCCCGCCCTTCCTACCTCCTC
TCCTCACCCTCCCTTGCGCAGTGGCTTCGTCCGCTCTTCCCACTTGCCCA
CCTCCACCCTCCCTTCCTCCTCCACCACCCTCCCTCCCTGGTTCCTCCAC
GGCGCTGCTGTCATCGTCGGGGAATACACGCACCTCACCTCCCTCGCCCT
TCACTACGGGTTCCGCCCGGAGGTCAATCGTCAATCAGACGACGAAGCTT
GTTGCCTCCTCGTTGCCTCCCTTCCTCCCTCCTCCGCCTTCCGTTCCACC
TCCTCCTGTCTGACCACCATCACCGAATCCCTCCTCTCCTCTCTTGCCTC
CCATGGCCCGCCCTCGGTAGCTCCCAAGGAAGAAGTAACAATGCTCGGGC
ACCATTTGCAGACGATTCTACGGCGGGGTAATCTCACCCGAGAGAGGGTG
TCTCAGGAGGCTTGGAAGAAGGAAAAGCACATCATGCGCGAGCCCGCCCT
GCTGGCAATTGGACAGGAGTGGCCCGAAAGGTTTACGATTGACGTGTTTG
GAGGTAAGAGGGAGGTAGGGGAGAGTAGCTTGCAAGCGGCAGTGAGGGAG
ACGAAGGAGGAAAGTGGGGACTGTGTGTGTCTGGAGCAGGAAGAGGAGGA
GGAGAGAGGGAAGGGAGGAAGAAGATATGTGCGGATACCGGGTTTGGATT
TCTGGGATGAAAGCATGGCTTTTTGGGGTTTCCTTTGTAGAGGGGAGGGA
GTGGGAGAGTGGGAGAAGGAGGGAGGGGGGCATGGAAATTTGGCGGCAAG
TGGTGGTGGAGGTGGAGGTGGACAGACCTGGAATGGAAGAGGAGGAGGGA
TAGGTGGTGGTGGAGGAGGAGGAAAAGGAGGAAGTAGTCGCTTTGGGGCG
ATGAGAGGAGGTCGTGGGGTCCGAGGAGGGAGGGGAAGAAGAAGTGAGAG
GGGCATGTTTGCTTCTGTTGCCAGTGGTGATCGTGAGGAGCACCTAGGAG
GAAGTAGAAGGGTGGGTGGGGTAGAAGGACGAGGACGACAACGAGGTTGA

Coding sequence (CDS) from alignment at chr8:1013558..1015507+

>NO08G03600.1 ID=NO08G03600.1|Name=NO08G03600.1|organism=Nannochloropsis oceanica|type=CDS|length=1950bp|location=Sequence derived from alignment at chr8:1013558..1015507+ (Nannochloropsis oceanica)
ATGGCCAGCATCCTCGACCATCCACCCAACTCTATAGTACAACCACCTAC
ACGGTTGCGACAAGTTAAAGATGGAGATGGTTTCTGTAATGATACCCCTT
CCGTAGAAGAGAGCCTTGCGGCGCTCACGCTTCACGACGACGAGGTCTAC
CAGACTGCCTCCTCTTCGACGGACGACGACGACAACAACGCTGCGGTAGG
CATGGGAAAGGCTGAGCGCAAACAGCGGCAAAAAGAGAAGAAGAAAGCGG
CAATCGCACTTGTTGCGACGTCTGCCGCTGGTTCAAAGAAAGCGGTGACG
ACGAATGACGCCCAAGCTGCTGCGGGGCATGTGTCCTCCTATTCATTTGA
AGCCTCCTGCACCATGATAGTCGATGCGGCCACGGCAGTGGCAACGATAC
CGAGTAAAACGAAATTAAAACCTAGTGGCAGACCCACAACTTTCTCCTCA
GATGCTTCCGCCACCGTCGCTTCCGCCCCCGCTGTCGACTCCACCACCAC
AACAACCACAACGGACAGCAGTATGGGTCCCACAAAAGTCCGTAAACCAC
GCCACAAAAAACAACCCAAATTTCTCTCCTCCTCATCCTCTTCATCGGCA
ACCCAACCCAACCCCAGCCTCTTCTCCGACCTATCCATTCTTCAAAAAAT
AACCAACAAACAAGCCGAAATCATCGAAGTCCACACCCCTAATTGCTCAT
GCCGAGGTGCGTTTTGGCTCAAGAATATGGAAGCGTCCTCCTTACTTGGT
TACGTCGCTGTTACCAAAGGCACTGATGGCGGTCGGATCCGCCCAGCCCT
CATCCTGGTTGCCGCAGATCATAGCCTGGAAGGGGAACGACAAGCAGTAG
CAACCATGAAGGCAACAGCAATTAAATACTCCAGCTTGCGTCCCGCGCGA
TGTGGCCGGACACAAACCCCCGTCCTCCCTCCCGCCCTTCCTACCTCCTC
TCCTCACCCTCCCTTGCGCAGTGGCTTCGTCCGCTCTTCCCACTTGCCCA
CCTCCACCCTCCCTTCCTCCTCCACCACCCTCCCTCCCTGGTTCCTCCAC
GGCGCTGCTGTCATCGTCGGGGAATACACGCACCTCACCTCCCTCGCCCT
TCACTACGGGTTCCGCCCGGAGGTCAATCGTCAATCAGACGACGAAGCTT
GTTGCCTCCTCGTTGCCTCCCTTCCTCCCTCCTCCGCCTTCCGTTCCACC
TCCTCCTGTCTGACCACCATCACCGAATCCCTCCTCTCCTCTCTTGCCTC
CCATGGCCCGCCCTCGGTAGCTCCCAAGGAAGAAGTAACAATGCTCGGGC
ACCATTTGCAGACGATTCTACGGCGGGGTAATCTCACCCGAGAGAGGGTG
TCTCAGGAGGCTTGGAAGAAGGAAAAGCACATCATGCGCGAGCCCGCCCT
GCTGGCAATTGGACAGGAGTGGCCCGAAAGGTTTACGATTGACGTGTTTG
GAGGTAAGAGGGAGGTAGGGGAGAGTAGCTTGCAAGCGGCAGTGAGGGAG
ACGAAGGAGGAAAGTGGGGACTGTGTGTGTCTGGAGCAGGAAGAGGAGGA
GGAGAGAGGGAAGGGAGGAAGAAGATATGTGCGGATACCGGGTTTGGATT
TCTGGGATGAAAGCATGGCTTTTTGGGGTTTCCTTTGTAGAGGGGAGGGA
GTGGGAGAGTGGGAGAAGGAGGGAGGGGGGCATGGAAATTTGGCGGCAAG
TGGTGGTGGAGGTGGAGGTGGACAGACCTGGAATGGAAGAGGAGGAGGGA
TAGGTGGTGGTGGAGGAGGAGGAAAAGGAGGAAGTAGTCGCTTTGGGGCG
ATGAGAGGAGGTCGTGGGGTCCGAGGAGGGAGGGGAAGAAGAAGTGAGAG
GGGCATGTTTGCTTCTGTTGCCAGTGGTGATCGTGAGGAGCACCTAGGAG
GAAGTAGAAGGGTGGGTGGGGTAGAAGGACGAGGACGACAACGAGGTTGA

Synonyms

Publications