NO08G03580, NO08G03580 (gene) Nannochloropsis oceanica

Overview
NameNO08G03580
Unique NameNO08G03580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2524
Alignment locationchr8:1004940..1007463 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1004940..1007463 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO08G03580 vs. NCBI_GenBank
Match: EWM26823.1 (hypothetical protein Naga_100018g51 [Nannochloropsis gaditana])

HSP 1 Score: 140.2 bits (352), Expect = 2.200e-29
Identity = 169/446 (37.89%), Postives = 217/446 (48.65%), Query Frame = 0 
Query:  184 LPPLPASSFLLPSRGGILGRPGLPRPPAGGVGRTAGKSSSSTTGGAVKSAGSFGFIGVNTIGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMEKEERRLGDQVSTLKRQLSRNVPTLPWSGNNSPTNIPTPANMKDGAHLQLHPMLQNPAAFPVHLSSSAATTHDSSEVFYDDFKPSAAAAVDKSKGKCGGKQELQVPAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHGDVANATEFAVDLFKRRSLLI-ACMLGVLLFLGGLGGFFIARSTLLSSQALNVGGMGGAEGGALPLTQQQMETLLEKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDLSG----FGSSRSSSSKIME--NVDASTAVVRHPGACSCDGIPLFKILLGRIARTFGRLVRFLD 623
            L P  AS FLL +RG   G PGLPR P G VG++  K S     GA +SAGSFGF   N   S                               GME+EER+L +QVSTLKRQL R+VP++PW+G  SPTN+P+   +  G      PM   P A P    +SA+   +S E F DD++    +   +++GK GG +                                                                  +A ATE A   +KR+ + +  C L ++L LGGLGG   ARS  + S+A+       AE  A+  T +++E  L++E       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D++      G S ++  K  E     A  A+V HPGAC CDGIPLFKI+ GR+ART GRL   +D
Sbjct:    6 LDPTAASGFLLAARGAASGGPGLPRAPGGTVGQSRVKGSQ----GATRSAGSFGFGAPNLKSS----NRGVEEQKVFTKEKSSRSSSQLSDSDDGMEREERQLQEQVSTLKRQLRRSVPSVPWTGTISPTNLPSERVLNKGIATSHAPM---PGALPSPFVASASVASESPETFCDDYQKPVIST--ENEGKGGGDKSESHKLSLKQDKDPGRDDSSVTVASASSTNHGDPCDERGGHETGMMGMMGRAGFVMKWGEVSPVRILACATEAAKRAWKRQPVAVFMCGLVMVLLLGGLGGILWARS--MESRAIFQKQGLEAERNAVLFTTREVEDFLQREHQKWEMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIADKTFEDGESLTTDKKRREAAGTGADMAMVLHPGACPCDGIPLFKIVWGRLARTLGRLRGSID 436
The following BLAST results are available for this feature:
BLAST of NO08G03580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26823.12.200e-2937.89hypothetical protein Naga_100018g51 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03580.1NO08G03580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583073gene_3692Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03580.1NO08G03580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03580 ID=NO08G03580|Name=NO08G03580|organism=Nannochloropsis oceanica|type=gene|length=2524bp
AGCGTGCGTCGATATCAGCGTGGCCAGGGATGTAACCCATACACCCTCGC
ATTGTCCGTAGGCTCAAGCTGCGTCCGTGGACCTCCAAGGAGCGAATCTT
ATATGCCTTGCGCGGCTCTGTGTCATGCTTGTCTCCTTCCTCTCTTGGCG
CCCACGCAACATCAGCAGGTATGATTGACGCCTACCCGACAACACAAACA
CAACACAACAACACGACAACACAGACCGTTGTCCACAAGCCAGGGCACCA
TGTCCCAGACAACGAAAAGTTTTCCTGGGCGCCACTCCTTCTTCGTAAAA
CGCACAAGTGCCAGCGCCAGCGCCAGCGCCAGCAAGATCCCTCCGCCTCC
AGTTGCTGCTCCCTCCCATCCTGCCTCAGAAACCAGTATGCAGCAAGTCG
GAGAGGAGCAGCACCACGACCACCGTCCCCATCATCTCCTGGCCGACAAC
GAAGAAGAATTGGAGGACGACCTGGCGAATCTTCTCGCTAACAAGAACAC
CGGTGGTTACTCCGCCGCGTCGTCCGCCGCTGCTTCTCCGCGTTCCCTAG
CAGCCTCCCCGAACACCTTTGATACGCCTAACCGCAATCATTTGTTAACC
TCCGTCTTGCATTCCTTAGAGGCGTACGAATTATCGGACCACGAGCAACC
GGCTGCGTCTACCATTTCTTCGAATACTCCTAGCCGCAGTCGGAGCAAAA
CCGGCCCGCTCCCCCCTTACCACTACCACTACCACAACAACGCCGGCAGC
GACTCCGACTCCGACATTCCCCCTGCTCCCATCTCTTCCTCCGCCACCTT
GCCTCCACTACCTGCTTCCTCCTTCCTTTTACCTTCGCGTGGTGGCATTT
TGGGTCGGCCCGGGCTCCCTCGTCCTCCTGCTGGTGGGGTCGGGCGGACT
GCTGGCAAAAGCAGCAGCAGTACTACGGGAGGGGCGGTCAAGAGCGCAGG
AAGTTTCGGATTCATAGGTGTGAACACAATTGGCAGTGGCAGTGGTGGCA
TGGCTGGGGAGAGAGGGCAGGGTAGGGGGAAGGGGAGTGGGAATATGAAT
AATAACAGTCATTTGTCTGATTCTGACGATGGGATGGAGAAGGAGGAGAG
GCGGCTGGGTGATCAAGTCTCAACCTTAAAGCGACAGCTCAGTCGAAATG
TGCCCACCCTTCCCTGGAGTGGGAACAATTCTCCGACAAACATTCCAACA
CCTGCCAACATGAAGGATGGAGCTCATCTACAGCTTCACCCTATGCTTCA
AAACCCAGCTGCTTTCCCCGTCCACCTCTCCTCCTCTGCAGCCACGACCC
ATGACTCATCGGAAGTTTTTTACGACGACTTCAAGCCATCCGCTGCAGCC
GCTGTGGACAAAAGCAAGGGGAAATGTGGTGGAAAGCAGGAGCTGCAGGT
GCCTGCAGAAGCAGCGGCCGGTGGAGCTGCTGTTGGCGCTGCTGGTGCTG
GTAGCAAGGGGCGTGGAAAAGGAACTGGCAAGAAGAAAGAATTGCAACAG
GATAAATCTTTGGCAGGTGCGACCGTTGCTAGTTTTACTGCTGCTAGCAC
GACTACTTCTATAACCACCACTGGTGCTCATGGGGATGTGGCGAATGCCA
CGGAGTTTGCAGTGGACCTGTTTAAGCGACGCTCTTTGTTGATAGCGTGT
ATGTTGGGCGTCCTCCTCTTCCTAGGAGGGTTGGGAGGGTTCTTCATCGC
TCGATCAACCTTGTTATCTTCACAAGCTCTGAATGTAGGAGGAATGGGAG
GAGCGGAAGGAGGGGCTCTGCCGTTGACGCAGCAGCAGATGGAAACGTTA
CTGGAAAAGGAGAAGCTGAAATGGCAGCAGCAGCAAGAGCAACTACAACA
ATATGAGCAGCAACGACAGCAACGAGCTAATCAGGAGCGAGAGGTCCAGG
CGAAGGAAGAGGCAGAAATGGACAAAGACGAGATGGTGGATCTTAGTGGT
TTTGGCAGCAGCCGTAGCAGCAGCAGCAAGATCATGGAAAATGTGGACGC
GAGTACGGCAGTGGTCCGTCATCCTGGTGCATGTAGTTGTGACGGTATTC
CTTTGTTTAAGATTTTGCTCGGTCGCATTGCCAGAACCTTTGGGCGGTTG
GTGCGGTTCTTGGATCGGCATGGGAAGAACAGGGGAAGAGTTAGGCACGG
GTGAAGGGAGCGAAGGAAGGATTGAGGGGAATTCTCACGTAAAGAAATGG
ATGAGGACGAGAAGATATTCACATAAGTTTCATATAAATGACAAGATTAT
AATACTTACACGCAAGACGGGGACTGAAAAATCATCTGCTGTCGCTTCTA
CCACTGTAAATGGACATGCTGGTCGAAAGGATGACTGGGCGTTTTGTCTA
CACAATTTTCGCTCCCTAAGGCATCGAAATGCACGTGTTATGACCATGCG
AAAGAGGAAAGATGACAACAAAACGAAAGCAAAAAAGTTTTTTTAAAATA
CAAGCGGAAAGAAGGGAGAAGCAATCAACAGTCAAAAAGAAGTAGACAAT
TCCAGCATGTGGGCGTACAGCACT
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protein sequence of NO08G03580.1

>NO08G03580.1-protein ID=NO08G03580.1-protein|Name=NO08G03580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=635bp
MSQTTKSFPGRHSFFVKRTSASASASASKIPPPPVAAPSHPASETSMQQV
GEEQHHDHRPHHLLADNEEELEDDLANLLANKNTGGYSAASSAAASPRSL
AASPNTFDTPNRNHLLTSVLHSLEAYELSDHEQPAASTISSNTPSRSRSK
TGPLPPYHYHYHNNAGSDSDSDIPPAPISSSATLPPLPASSFLLPSRGGI
LGRPGLPRPPAGGVGRTAGKSSSSTTGGAVKSAGSFGFIGVNTIGSGSGG
MAGERGQGRGKGSGNMNNNSHLSDSDDGMEKEERRLGDQVSTLKRQLSRN
VPTLPWSGNNSPTNIPTPANMKDGAHLQLHPMLQNPAAFPVHLSSSAATT
HDSSEVFYDDFKPSAAAAVDKSKGKCGGKQELQVPAEAAAGGAAVGAAGA
GSKGRGKGTGKKKELQQDKSLAGATVASFTAASTTTSITTTGAHGDVANA
TEFAVDLFKRRSLLIACMLGVLLFLGGLGGFFIARSTLLSSQALNVGGMG
GAEGGALPLTQQQMETLLEKEKLKWQQQQEQLQQYEQQRQQRANQEREVQ
AKEEAEMDKDEMVDLSGFGSSRSSSSKIMENVDASTAVVRHPGACSCDGI
PLFKILLGRIARTFGRLVRFLDRHGKNRGRVRHG*
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Synonyms
Publications