NO08G03580.1, NO08G03580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03580.1
Unique NameNO08G03580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2524
Alignment locationchr8:1004940..1007463 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1004940..1007463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO08G03580.1 vs.
Match: EWM26823.1 (hypothetical protein Naga_100018g51 [Nannochloropsis gaditana])

HSP 1 Score: 167.9 bits (424), Expect = 9.900e-38
Identity = 174/458 (37.99%), Postives = 240/458 (52.40%), Query Frame = 0 
Query:  181 SATLPPLPASSFLLPSRGGILGRPGLPRPPAGGVGRTAGKSSSSTTGGAVKSAGSFGFIGVNTIGSGSGGMAGERGQGRGKGSGNMNNNSHLSDSDDGMEKEERRLGDQVSTLKRQLSRNVPTLPWSGNNSPTNIPTPANMKDGAHLQLHPMLQNPAAFPVHLSSSAATTHDSSEVFYDDFKPSAAAAVDKSKGKCGG------KQELQVPAEAAAGGAAVGAAGAGSKGRGKGTGKKKELQQDKSLAGATVASFTAASTTTSITTTGAHGDV---ANATEFAVDLFKRRSLLI-ACMLGVLLFLGGLGGFFIARSTLLSSQALNVGGMGGAEGGALPLTQQQMETLLEKEKLKWQQQ-QEQLQQYEQQRQ-QRANQEREVQA-KEEAEMDKDEMVDLS-GFGSSRSSSSKIME--NVDASTAVVRHPGACSCDGIPLFKILLGRIARTFGRLVRFLD 623
            +A L P  AS FLL +RG   G PGLPR P G VG++  K S     GA +SAGSFGF G   + S + G+  ++   + K S    ++S LSDSDDGME+EER+L +QVSTLKRQL R+VP++PW+G  SPTN+P+   +  G      PM   P A P    +SA+   +S E F DD++    +   +++GK GG      K  L+   +     ++V  A A S   G    ++          G              +   G    V   A ATE A   +KR+ + +  C L ++L LGGLGG   ARS  + S+A+       AE  A+  T +++E  L++E  KW+ Q   QLQQ EQ RQ QR N E   +    + E  KD++ D +   G S ++  K  E     A  A+V HPGAC CDGIPLFKI+ GR+ART GRL   +D
Sbjct:    3 TAPLDPTAASGFLLAARGAASGGPGLPRAPGGTVGQSRVKGSQ----GATRSAGSFGF-GAPNLKSSNRGVEEQKVFTKEKSS---RSSSQLSDSDDGMEREERQLQEQVSTLKRQLRRSVPSVPWTGTISPTNLPSERVLNKGIATSHAPM---PGALPSPFVASASVASESPETFCDDYQKPVIST--ENEGKGGGDKSESHKLSLKQDKDPGRDDSSVTVASASSTNHGDPCDER---------GGHETGMMGMMGRAGFVMKWGEVSPVRILACATEAAKRAWKRQPVAVFMCGLVMVLLLGGLGGILWARS--MESRAIFQKQGLEAERNAVLFTTREVEDFLQREHQKWEMQLYRQLQQQEQARQAQRQNHEHARKGFDSKHESSKDDIADKTFEDGESLTTDKKRREAAGTGADMAMVLHPGACPCDGIPLFKIVWGRLARTLGRLRGSID 436
The following BLAST results are available for this feature:
BLAST of NO08G03580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26823.19.900e-3837.99hypothetical protein Naga_100018g51 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03580NO08G03580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03580.1NO08G03580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03580.1.cds1NO08G03580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03580.1 ID=NO08G03580.1|Name=NO08G03580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2524bp
AGCGTGCGTCGATATCAGCGTGGCCAGGGATGTAACCCATACACCCTCGC
ATTGTCCGTAGGCTCAAGCTGCGTCCGTGGACCTCCAAGGAGCGAATCTT
ATATGCCTTGCGCGGCTCTGTGTCATGCTTGTCTCCTTCCTCTCTTGGCG
CCCACGCAACATCAGCAGGTATGATTGACGCCTACCCGACAACACAAACA
CAACACAACAACACGACAACACAGACCGTTGTCCACAAGCCAGGGCACCA
TGTCCCAGACAACGAAAAGTTTTCCTGGGCGCCACTCCTTCTTCGTAAAA
CGCACAAGTGCCAGCGCCAGCGCCAGCGCCAGCAAGATCCCTCCGCCTCC
AGTTGCTGCTCCCTCCCATCCTGCCTCAGAAACCAGTATGCAGCAAGTCG
GAGAGGAGCAGCACCACGACCACCGTCCCCATCATCTCCTGGCCGACAAC
GAAGAAGAATTGGAGGACGACCTGGCGAATCTTCTCGCTAACAAGAACAC
CGGTGGTTACTCCGCCGCGTCGTCCGCCGCTGCTTCTCCGCGTTCCCTAG
CAGCCTCCCCGAACACCTTTGATACGCCTAACCGCAATCATTTGTTAACC
TCCGTCTTGCATTCCTTAGAGGCGTACGAATTATCGGACCACGAGCAACC
GGCTGCGTCTACCATTTCTTCGAATACTCCTAGCCGCAGTCGGAGCAAAA
CCGGCCCGCTCCCCCCTTACCACTACCACTACCACAACAACGCCGGCAGC
GACTCCGACTCCGACATTCCCCCTGCTCCCATCTCTTCCTCCGCCACCTT
GCCTCCACTACCTGCTTCCTCCTTCCTTTTACCTTCGCGTGGTGGCATTT
TGGGTCGGCCCGGGCTCCCTCGTCCTCCTGCTGGTGGGGTCGGGCGGACT
GCTGGCAAAAGCAGCAGCAGTACTACGGGAGGGGCGGTCAAGAGCGCAGG
AAGTTTCGGATTCATAGGTGTGAACACAATTGGCAGTGGCAGTGGTGGCA
TGGCTGGGGAGAGAGGGCAGGGTAGGGGGAAGGGGAGTGGGAATATGAAT
AATAACAGTCATTTGTCTGATTCTGACGATGGGATGGAGAAGGAGGAGAG
GCGGCTGGGTGATCAAGTCTCAACCTTAAAGCGACAGCTCAGTCGAAATG
TGCCCACCCTTCCCTGGAGTGGGAACAATTCTCCGACAAACATTCCAACA
CCTGCCAACATGAAGGATGGAGCTCATCTACAGCTTCACCCTATGCTTCA
AAACCCAGCTGCTTTCCCCGTCCACCTCTCCTCCTCTGCAGCCACGACCC
ATGACTCATCGGAAGTTTTTTACGACGACTTCAAGCCATCCGCTGCAGCC
GCTGTGGACAAAAGCAAGGGGAAATGTGGTGGAAAGCAGGAGCTGCAGGT
GCCTGCAGAAGCAGCGGCCGGTGGAGCTGCTGTTGGCGCTGCTGGTGCTG
GTAGCAAGGGGCGTGGAAAAGGAACTGGCAAGAAGAAAGAATTGCAACAG
GATAAATCTTTGGCAGGTGCGACCGTTGCTAGTTTTACTGCTGCTAGCAC
GACTACTTCTATAACCACCACTGGTGCTCATGGGGATGTGGCGAATGCCA
CGGAGTTTGCAGTGGACCTGTTTAAGCGACGCTCTTTGTTGATAGCGTGT
ATGTTGGGCGTCCTCCTCTTCCTAGGAGGGTTGGGAGGGTTCTTCATCGC
TCGATCAACCTTGTTATCTTCACAAGCTCTGAATGTAGGAGGAATGGGAG
GAGCGGAAGGAGGGGCTCTGCCGTTGACGCAGCAGCAGATGGAAACGTTA
CTGGAAAAGGAGAAGCTGAAATGGCAGCAGCAGCAAGAGCAACTACAACA
ATATGAGCAGCAACGACAGCAACGAGCTAATCAGGAGCGAGAGGTCCAGG
CGAAGGAAGAGGCAGAAATGGACAAAGACGAGATGGTGGATCTTAGTGGT
TTTGGCAGCAGCCGTAGCAGCAGCAGCAAGATCATGGAAAATGTGGACGC
GAGTACGGCAGTGGTCCGTCATCCTGGTGCATGTAGTTGTGACGGTATTC
CTTTGTTTAAGATTTTGCTCGGTCGCATTGCCAGAACCTTTGGGCGGTTG
GTGCGGTTCTTGGATCGGCATGGGAAGAACAGGGGAAGAGTTAGGCACGG
GTGAAGGGAGCGAAGGAAGGATTGAGGGGAATTCTCACGTAAAGAAATGG
ATGAGGACGAGAAGATATTCACATAAGTTTCATATAAATGACAAGATTAT
AATACTTACACGCAAGACGGGGACTGAAAAATCATCTGCTGTCGCTTCTA
CCACTGTAAATGGACATGCTGGTCGAAAGGATGACTGGGCGTTTTGTCTA
CACAATTTTCGCTCCCTAAGGCATCGAAATGCACGTGTTATGACCATGCG
AAAGAGGAAAGATGACAACAAAACGAAAGCAAAAAAGTTTTTTTAAAATA
CAAGCGGAAAGAAGGGAGAAGCAATCAACAGTCAAAAAGAAGTAGACAAT
TCCAGCATGTGGGCGTACAGCACT
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protein sequence of NO08G03580.1

>NO08G03580.1-protein ID=NO08G03580.1-protein|Name=NO08G03580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=635bp
MSQTTKSFPGRHSFFVKRTSASASASASKIPPPPVAAPSHPASETSMQQV
GEEQHHDHRPHHLLADNEEELEDDLANLLANKNTGGYSAASSAAASPRSL
AASPNTFDTPNRNHLLTSVLHSLEAYELSDHEQPAASTISSNTPSRSRSK
TGPLPPYHYHYHNNAGSDSDSDIPPAPISSSATLPPLPASSFLLPSRGGI
LGRPGLPRPPAGGVGRTAGKSSSSTTGGAVKSAGSFGFIGVNTIGSGSGG
MAGERGQGRGKGSGNMNNNSHLSDSDDGMEKEERRLGDQVSTLKRQLSRN
VPTLPWSGNNSPTNIPTPANMKDGAHLQLHPMLQNPAAFPVHLSSSAATT
HDSSEVFYDDFKPSAAAAVDKSKGKCGGKQELQVPAEAAAGGAAVGAAGA
GSKGRGKGTGKKKELQQDKSLAGATVASFTAASTTTSITTTGAHGDVANA
TEFAVDLFKRRSLLIACMLGVLLFLGGLGGFFIARSTLLSSQALNVGGMG
GAEGGALPLTQQQMETLLEKEKLKWQQQQEQLQQYEQQRQQRANQEREVQ
AKEEAEMDKDEMVDLSGFGSSRSSSSKIMENVDASTAVVRHPGACSCDGI
PLFKILLGRIARTFGRLVRFLDRHGKNRGRVRHG*
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mRNA from alignment at chr8:1004940..1007463+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03580.1 ID=NO08G03580.1|Name=NO08G03580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2524bp|location=Sequence derived from alignment at chr8:1004940..1007463+ (Nannochloropsis oceanica)
AGCGTGCGTCGATATCAGCGTGGCCAGGGATGTAACCCATACACCCTCGC
ATTGTCCGTAGGCTCAAGCTGCGTCCGTGGACCTCCAAGGAGCGAATCTT
ATATGCCTTGCGCGGCTCTGTGTCATGCTTGTCTCCTTCCTCTCTTGGCG
CCCACGCAACATCAGCAGGTATGATTGACGCCTACCCGACAACACAAACA
CAACACAACAACACGACAACACAGACCGTTGTCCACAAGCCAGGGCACCA
TGTCCCAGACAACGAAAAGTTTTCCTGGGCGCCACTCCTTCTTCGTAAAA
CGCACAAGTGCCAGCGCCAGCGCCAGCGCCAGCAAGATCCCTCCGCCTCC
AGTTGCTGCTCCCTCCCATCCTGCCTCAGAAACCAGTATGCAGCAAGTCG
GAGAGGAGCAGCACCACGACCACCGTCCCCATCATCTCCTGGCCGACAAC
GAAGAAGAATTGGAGGACGACCTGGCGAATCTTCTCGCTAACAAGAACAC
CGGTGGTTACTCCGCCGCGTCGTCCGCCGCTGCTTCTCCGCGTTCCCTAG
CAGCCTCCCCGAACACCTTTGATACGCCTAACCGCAATCATTTGTTAACC
TCCGTCTTGCATTCCTTAGAGGCGTACGAATTATCGGACCACGAGCAACC
GGCTGCGTCTACCATTTCTTCGAATACTCCTAGCCGCAGTCGGAGCAAAA
CCGGCCCGCTCCCCCCTTACCACTACCACTACCACAACAACGCCGGCAGC
GACTCCGACTCCGACATTCCCCCTGCTCCCATCTCTTCCTCCGCCACCTT
GCCTCCACTACCTGCTTCCTCCTTCCTTTTACCTTCGCGTGGTGGCATTT
TGGGTCGGCCCGGGCTCCCTCGTCCTCCTGCTGGTGGGGTCGGGCGGACT
GCTGGCAAAAGCAGCAGCAGTACTACGGGAGGGGCGGTCAAGAGCGCAGG
AAGTTTCGGATTCATAGGTGTGAACACAATTGGCAGTGGCAGTGGTGGCA
TGGCTGGGGAGAGAGGGCAGGGTAGGGGGAAGGGGAGTGGGAATATGAAT
AATAACAGTCATTTGTCTGATTCTGACGATGGGATGGAGAAGGAGGAGAG
GCGGCTGGGTGATCAAGTCTCAACCTTAAAGCGACAGCTCAGTCGAAATG
TGCCCACCCTTCCCTGGAGTGGGAACAATTCTCCGACAAACATTCCAACA
CCTGCCAACATGAAGGATGGAGCTCATCTACAGCTTCACCCTATGCTTCA
AAACCCAGCTGCTTTCCCCGTCCACCTCTCCTCCTCTGCAGCCACGACCC
ATGACTCATCGGAAGTTTTTTACGACGACTTCAAGCCATCCGCTGCAGCC
GCTGTGGACAAAAGCAAGGGGAAATGTGGTGGAAAGCAGGAGCTGCAGGT
GCCTGCAGAAGCAGCGGCCGGTGGAGCTGCTGTTGGCGCTGCTGGTGCTG
GTAGCAAGGGGCGTGGAAAAGGAACTGGCAAGAAGAAAGAATTGCAACAG
GATAAATCTTTGGCAGGTGCGACCGTTGCTAGTTTTACTGCTGCTAGCAC
GACTACTTCTATAACCACCACTGGTGCTCATGGGGATGTGGCGAATGCCA
CGGAGTTTGCAGTGGACCTGTTTAAGCGACGCTCTTTGTTGATAGCGTGT
ATGTTGGGCGTCCTCCTCTTCCTAGGAGGGTTGGGAGGGTTCTTCATCGC
TCGATCAACCTTGTTATCTTCACAAGCTCTGAATGTAGGAGGAATGGGAG
GAGCGGAAGGAGGGGCTCTGCCGTTGACGCAGCAGCAGATGGAAACGTTA
CTGGAAAAGGAGAAGCTGAAATGGCAGCAGCAGCAAGAGCAACTACAACA
ATATGAGCAGCAACGACAGCAACGAGCTAATCAGGAGCGAGAGGTCCAGG
CGAAGGAAGAGGCAGAAATGGACAAAGACGAGATGGTGGATCTTAGTGGT
TTTGGCAGCAGCCGTAGCAGCAGCAGCAAGATCATGGAAAATGTGGACGC
GAGTACGGCAGTGGTCCGTCATCCTGGTGCATGTAGTTGTGACGGTATTC
CTTTGTTTAAGATTTTGCTCGGTCGCATTGCCAGAACCTTTGGGCGGTTG
GTGCGGTTCTTGGATCGGCATGGGAAGAACAGGGGAAGAGTTAGGCACGG
GTGAAGGGAGCGAAGGAAGGATTGAGGGGAATTCTCACGTAAAGAAATGG
ATGAGGACGAGAAGATATTCACATAAGTTTCATATAAATGACAAGATTAT
AATACTTACACGCAAGACGGGGACTGAAAAATCATCTGCTGTCGCTTCTA
CCACTGTAAATGGACATGCTGGTCGAAAGGATGACTGGGCGTTTTGTCTA
CACAATTTTCGCTCCCTAAGGCATCGAAATGCACGTGTTATGACCATGCG
AAAGAGGAAAGATGACAACAAAACGAAAGCAAAAAAGTTTTTTTAAAATA
CAAGCGGAAAGAAGGGAGAAGCAATCAACAGTCAAAAAGAAGTAGACAAT
TCCAGCATGTGGGCGTACAGCACT
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Coding sequence (CDS) from alignment at chr8:1004940..1007463+

>NO08G03580.1 ID=NO08G03580.1|Name=NO08G03580.1|organism=Nannochloropsis oceanica|type=CDS|length=1905bp|location=Sequence derived from alignment at chr8:1004940..1007463+ (Nannochloropsis oceanica)
ATGTCCCAGACAACGAAAAGTTTTCCTGGGCGCCACTCCTTCTTCGTAAA
ACGCACAAGTGCCAGCGCCAGCGCCAGCGCCAGCAAGATCCCTCCGCCTC
CAGTTGCTGCTCCCTCCCATCCTGCCTCAGAAACCAGTATGCAGCAAGTC
GGAGAGGAGCAGCACCACGACCACCGTCCCCATCATCTCCTGGCCGACAA
CGAAGAAGAATTGGAGGACGACCTGGCGAATCTTCTCGCTAACAAGAACA
CCGGTGGTTACTCCGCCGCGTCGTCCGCCGCTGCTTCTCCGCGTTCCCTA
GCAGCCTCCCCGAACACCTTTGATACGCCTAACCGCAATCATTTGTTAAC
CTCCGTCTTGCATTCCTTAGAGGCGTACGAATTATCGGACCACGAGCAAC
CGGCTGCGTCTACCATTTCTTCGAATACTCCTAGCCGCAGTCGGAGCAAA
ACCGGCCCGCTCCCCCCTTACCACTACCACTACCACAACAACGCCGGCAG
CGACTCCGACTCCGACATTCCCCCTGCTCCCATCTCTTCCTCCGCCACCT
TGCCTCCACTACCTGCTTCCTCCTTCCTTTTACCTTCGCGTGGTGGCATT
TTGGGTCGGCCCGGGCTCCCTCGTCCTCCTGCTGGTGGGGTCGGGCGGAC
TGCTGGCAAAAGCAGCAGCAGTACTACGGGAGGGGCGGTCAAGAGCGCAG
GAAGTTTCGGATTCATAGGTGTGAACACAATTGGCAGTGGCAGTGGTGGC
ATGGCTGGGGAGAGAGGGCAGGGTAGGGGGAAGGGGAGTGGGAATATGAA
TAATAACAGTCATTTGTCTGATTCTGACGATGGGATGGAGAAGGAGGAGA
GGCGGCTGGGTGATCAAGTCTCAACCTTAAAGCGACAGCTCAGTCGAAAT
GTGCCCACCCTTCCCTGGAGTGGGAACAATTCTCCGACAAACATTCCAAC
ACCTGCCAACATGAAGGATGGAGCTCATCTACAGCTTCACCCTATGCTTC
AAAACCCAGCTGCTTTCCCCGTCCACCTCTCCTCCTCTGCAGCCACGACC
CATGACTCATCGGAAGTTTTTTACGACGACTTCAAGCCATCCGCTGCAGC
CGCTGTGGACAAAAGCAAGGGGAAATGTGGTGGAAAGCAGGAGCTGCAGG
TGCCTGCAGAAGCAGCGGCCGGTGGAGCTGCTGTTGGCGCTGCTGGTGCT
GGTAGCAAGGGGCGTGGAAAAGGAACTGGCAAGAAGAAAGAATTGCAACA
GGATAAATCTTTGGCAGGTGCGACCGTTGCTAGTTTTACTGCTGCTAGCA
CGACTACTTCTATAACCACCACTGGTGCTCATGGGGATGTGGCGAATGCC
ACGGAGTTTGCAGTGGACCTGTTTAAGCGACGCTCTTTGTTGATAGCGTG
TATGTTGGGCGTCCTCCTCTTCCTAGGAGGGTTGGGAGGGTTCTTCATCG
CTCGATCAACCTTGTTATCTTCACAAGCTCTGAATGTAGGAGGAATGGGA
GGAGCGGAAGGAGGGGCTCTGCCGTTGACGCAGCAGCAGATGGAAACGTT
ACTGGAAAAGGAGAAGCTGAAATGGCAGCAGCAGCAAGAGCAACTACAAC
AATATGAGCAGCAACGACAGCAACGAGCTAATCAGGAGCGAGAGGTCCAG
GCGAAGGAAGAGGCAGAAATGGACAAAGACGAGATGGTGGATCTTAGTGG
TTTTGGCAGCAGCCGTAGCAGCAGCAGCAAGATCATGGAAAATGTGGACG
CGAGTACGGCAGTGGTCCGTCATCCTGGTGCATGTAGTTGTGACGGTATT
CCTTTGTTTAAGATTTTGCTCGGTCGCATTGCCAGAACCTTTGGGCGGTT
GGTGCGGTTCTTGGATCGGCATGGGAAGAACAGGGGAAGAGTTAGGCACG
GGTGA
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Synonyms
Publications