NO08G03440, NO08G03440 (gene) Nannochloropsis oceanica

Overview
NameNO08G03440
Unique NameNO08G03440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1681
Alignment locationchr8:959446..961126 +

Link to JBrowse

Properties
Property NameValue
DescriptionLung cancer oncogene 5
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:959446..961126 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone
IPR002068A-crystallin/Hsp20_dom
Homology
The following BLAST results are available for this feature:
BLAST of NO08G03440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008668NSK008668Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03440.1NO08G03440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03440.1NO08G03440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03440 ID=NO08G03440|Name=NO08G03440|organism=Nannochloropsis oceanica|type=gene|length=1681bp
ATGCCAAGTCGGGTTGTACTTCTTATCAAACTCCTTCTTCACGTAAGCTG
CAATGTCTTTCTCGATATTGAATTGGTCCAGTGCCTGCGACGCGCAGTCG
ACAGCGTCTTGCTGCATGTCCTCCGACATGTCCGCGTTTTTGATGACAGC
CTTGCGTTCCGCCATTTTTTGGGGTATGTGATTAGTGGTAGAGAAGGGCC
GGGGGACAGGCTCGGGAGGAGCTGGAGGGCGGGGACGATGGGAGATGCGA
GTAGAGAGGCTTGGCTACAAGCGCAGGAAGAGCGCGTGGCCTCTGGTGCT
GTGCGTGGgtgggaagttagggcatacgataagcaaaatttaaggagcaa
atagaaggcttgagagatgcttgggccaaacagccacagctccaccgccg
ccgcgcggatatagtccaacggtttattcttgtcgtgatggtggtggcgg
tggctgtgtgcgcgggctgcagtgtgctgtggaagggcatcggacttggg
aagacgacatcgaaaagttgtcaaataatttagcgatgaccacggggggg
cgcagagtccacgttacacaaccagcttgctttgctgcatgatttacaca
aagctgtaattgtcctgggtgtgggttgtccccgtgcgtgaacactgaga
agatagaacagaaaaagtgccctctctaccgctcatcgtcgtgtcgtcat
cacagcttcgctcctgccttttttcgcgaggactctctcctgggcctgta
atctcctccacccttacagtcttgcccccccatttcatgctctcaaaaca
tttcatgctctcaaaatatttcaggcgctgctacgtgggtctagtgtttg
gacccgcggcagaaatcagaagcagagcatagcccggccaaagcagtctc
tcactcatttcacctccttcctgcccttcaccgaccccacacgccacatc
ataacgacgatggacaccagcagcagcccacggctttcctggagagatga
atatttgtaatacgtccacagGCCTCTGCATTCCCAGCAACTGCCAGCAG
GCGCTTCCCCCGTCATCGTGGAGTCTCTCAAGCTACGGGTCGAGGAGGAG
AGGGAGTTCTATTCCGTCGTCGCTGACCTGCCGGGTGTGAAGAAGCAAGA
TAAGCAAGgtatattgtgagtatagttttttttctggtgcgtacaagaca
ttgatctatctggtcgatggcaacagtcgtgggcggttctgtgtgtgctg
cttctttttctctgccacacaccacggcagtatccccccctcacctcgcc
gatgagcctttttcgacccgtctaccgaccggtgccgtaggtctctgcct
accggctgtgtgattttgacttcccccttttcccatcataccagcccagc
cgacagagcatgacgcgtgctcctccctctccttgttccctcaccttaat
tatacccctgcctacttacttcgacctccaacagACGTCCACCTAGCCCT
CGACGACGCCCGCACCCTTTCCATAACTGCCAAACGCCGTCCCATCCCCA
GTAGCACCAGCAATAGCGACAGCGACCGCATTCATCCTATCATCCAGATC
AACCGCAAATACATCCTCCCCAAATTTGCGAATCCGAAGGACATGCGCGC
CGATATAATCGGAGGCGTGTTGTATATATAG
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protein sequence of NO08G03440.1

>NO08G03440.1-protein ID=NO08G03440.1-protein|Name=NO08G03440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MPSRVVLLIKLLLHVSCNVFLDIELVQCLRRAVDSVLLHVLRHVRVFDDS
LAFRHFLGYVISGREGPGDRLGRSWRAGTMGDASREAWLQAQEERVASGA
VRGPLHSQQLPAGASPVIVESLKLRVEEEREFYSVVADLPGVKKQDKQDV
HLALDDARTLSITAKRRPIPSSTSNSDSDRIHPIIQINRKYILPKFANPK
DMRADIIGGVLYI*
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Synonyms
Publications