NO08G03440.1, NO08G03440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03440.1
Unique NameNO08G03440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length642
Alignment locationchr8:959446..961126 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:959446..961126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G03440.1 vs.
Match: XP_005854529.1 (lung cancer oncogene 5 [Nannochloropsis gaditana CCMP526]; EKU21832.1 lung cancer oncogene 5 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 63.5 bits (153), Expect = 8.900e-7
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 0 
Query:    1 MPSRVVLLIKLLLHVSCNVFLDIELVQCLRRAVDSVLLHVLRHVRVFDDSLAFRH 56
            MP RV+ L+KLL  V C+V LD++L+Q LRR +  +LLH+ RH+ + DD  AF H
Sbjct:   18 MPCRVIFLVKLLFDVRCDVLLDVKLIQSLRRTIYRILLHIFRHIGILDDCFAFSH 72
The following BLAST results are available for this feature:
BLAST of NO08G03440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854529.18.900e-750.91lung cancer oncogene 5 [Nannochloropsis gaditana C... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03440NO08G03440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03440.1NO08G03440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03440.1.cds1NO08G03440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03440.1.cds2NO08G03440.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03440.1.cds3NO08G03440.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03440.1 ID=NO08G03440.1|Name=NO08G03440.1|organism=Nannochloropsis oceanica|type=mRNA|length=642bp
ATGCCAAGTCGGGTTGTACTTCTTATCAAACTCCTTCTTCACGTAAGCTG
CAATGTCTTTCTCGATATTGAATTGGTCCAGTGCCTGCGACGCGCAGTCG
ACAGCGTCTTGCTGCATGTCCTCCGACATGTCCGCGTTTTTGATGACAGC
CTTGCGTTCCGCCATTTTTTGGGGTATGTGATTAGTGGTAGAGAAGGGCC
GGGGGACAGGCTCGGGAGGAGCTGGAGGGCGGGGACGATGGGAGATGCGA
GTAGAGAGGCTTGGCTACAAGCGCAGGAAGAGCGCGTGGCCTCTGGTGCT
GTGCGTGGGCCTCTGCATTCCCAGCAACTGCCAGCAGGCGCTTCCCCCGT
CATCGTGGAGTCTCTCAAGCTACGGGTCGAGGAGGAGAGGGAGTTCTATT
CCGTCGTCGCTGACCTGCCGGGTGTGAAGAAGCAAGATAAGCAAGACGTC
CACCTAGCCCTCGACGACGCCCGCACCCTTTCCATAACTGCCAAACGCCG
TCCCATCCCCAGTAGCACCAGCAATAGCGACAGCGACCGCATTCATCCTA
TCATCCAGATCAACCGCAAATACATCCTCCCCAAATTTGCGAATCCGAAG
GACATGCGCGCCGATATAATCGGAGGCGTGTTGTATATATAG
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protein sequence of NO08G03440.1

>NO08G03440.1-protein ID=NO08G03440.1-protein|Name=NO08G03440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MPSRVVLLIKLLLHVSCNVFLDIELVQCLRRAVDSVLLHVLRHVRVFDDS
LAFRHFLGYVISGREGPGDRLGRSWRAGTMGDASREAWLQAQEERVASGA
VRGPLHSQQLPAGASPVIVESLKLRVEEEREFYSVVADLPGVKKQDKQDV
HLALDDARTLSITAKRRPIPSSTSNSDSDRIHPIIQINRKYILPKFANPK
DMRADIIGGVLYI*
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mRNA from alignment at chr8:959446..961126+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03440.1 ID=NO08G03440.1|Name=NO08G03440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1681bp|location=Sequence derived from alignment at chr8:959446..961126+ (Nannochloropsis oceanica)
ATGCCAAGTCGGGTTGTACTTCTTATCAAACTCCTTCTTCACGTAAGCTG
CAATGTCTTTCTCGATATTGAATTGGTCCAGTGCCTGCGACGCGCAGTCG
ACAGCGTCTTGCTGCATGTCCTCCGACATGTCCGCGTTTTTGATGACAGC
CTTGCGTTCCGCCATTTTTTGGGGTATGTGATTAGTGGTAGAGAAGGGCC
GGGGGACAGGCTCGGGAGGAGCTGGAGGGCGGGGACGATGGGAGATGCGA
GTAGAGAGGCTTGGCTACAAGCGCAGGAAGAGCGCGTGGCCTCTGGTGCT
GTGCGTGGGTGGGAAGTTAGGGCATACGATAAGCAAAATTTAAGGAGCAA
ATAGAAGGCTTGAGAGATGCTTGGGCCAAACAGCCACAGCTCCACCGCCG
CCGCGCGGATATAGTCCAACGGTTTATTCTTGTCGTGATGGTGGTGGCGG
TGGCTGTGTGCGCGGGCTGCAGTGTGCTGTGGAAGGGCATCGGACTTGGG
AAGACGACATCGAAAAGTTGTCAAATAATTTAGCGATGACCACGGGGGGG
CGCAGAGTCCACGTTACACAACCAGCTTGCTTTGCTGCATGATTTACACA
AAGCTGTAATTGTCCTGGGTGTGGGTTGTCCCCGTGCGTGAACACTGAGA
AGATAGAACAGAAAAAGTGCCCTCTCTACCGCTCATCGTCGTGTCGTCAT
CACAGCTTCGCTCCTGCCTTTTTTCGCGAGGACTCTCTCCTGGGCCTGTA
ATCTCCTCCACCCTTACAGTCTTGCCCCCCCATTTCATGCTCTCAAAACA
TTTCATGCTCTCAAAATATTTCAGGCGCTGCTACGTGGGTCTAGTGTTTG
GACCCGCGGCAGAAATCAGAAGCAGAGCATAGCCCGGCCAAAGCAGTCTC
TCACTCATTTCACCTCCTTCCTGCCCTTCACCGACCCCACACGCCACATC
ATAACGACGATGGACACCAGCAGCAGCCCACGGCTTTCCTGGAGAGATGA
ATATTTGTAATACGTCCACAGGCCTCTGCATTCCCAGCAACTGCCAGCAG
GCGCTTCCCCCGTCATCGTGGAGTCTCTCAAGCTACGGGTCGAGGAGGAG
AGGGAGTTCTATTCCGTCGTCGCTGACCTGCCGGGTGTGAAGAAGCAAGA
TAAGCAAGGTATATTGTGAGTATAGTTTTTTTTCTGGTGCGTACAAGACA
TTGATCTATCTGGTCGATGGCAACAGTCGTGGGCGGTTCTGTGTGTGCTG
CTTCTTTTTCTCTGCCACACACCACGGCAGTATCCCCCCCTCACCTCGCC
GATGAGCCTTTTTCGACCCGTCTACCGACCGGTGCCGTAGGTCTCTGCCT
ACCGGCTGTGTGATTTTGACTTCCCCCTTTTCCCATCATACCAGCCCAGC
CGACAGAGCATGACGCGTGCTCCTCCCTCTCCTTGTTCCCTCACCTTAAT
TATACCCCTGCCTACTTACTTCGACCTCCAACAGACGTCCACCTAGCCCT
CGACGACGCCCGCACCCTTTCCATAACTGCCAAACGCCGTCCCATCCCCA
GTAGCACCAGCAATAGCGACAGCGACCGCATTCATCCTATCATCCAGATC
AACCGCAAATACATCCTCCCCAAATTTGCGAATCCGAAGGACATGCGCGC
CGATATAATCGGAGGCGTGTTGTATATATAG
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Coding sequence (CDS) from alignment at chr8:959446..961126+

>NO08G03440.1 ID=NO08G03440.1|Name=NO08G03440.1|organism=Nannochloropsis oceanica|type=CDS|length=642bp|location=Sequence derived from alignment at chr8:959446..961126+ (Nannochloropsis oceanica)
ATGCCAAGTCGGGTTGTACTTCTTATCAAACTCCTTCTTCACGTAAGCTG
CAATGTCTTTCTCGATATTGAATTGGTCCAGTGCCTGCGACGCGCAGTCG
ACAGCGTCTTGCTGCATGTCCTCCGACATGTCCGCGTTTTTGATGACAGC
CTTGCGTTCCGCCATTTTTTGGGGTATGTGATTAGTGGTAGAGAAGGGCC
GGGGGACAGGCTCGGGAGGAGCTGGAGGGCGGGGACGATGGGAGATGCGA
GTAGAGAGGCTTGGCTACAAGCGCAGGAAGAGCGCGTGGCCTCTGGTGCT
GTGCGTGGGCCTCTGCATTCCCAGCAACTGCCAGCAGGCGCTTCCCCCGT
CATCGTGGAGTCTCTCAAGCTACGGGTCGAGGAGGAGAGGGAGTTCTATT
CCGTCGTCGCTGACCTGCCGGGTGTGAAGAAGCAAGATAAGCAAGACGTC
CACCTAGCCCTCGACGACGCCCGCACCCTTTCCATAACTGCCAAACGCCG
TCCCATCCCCAGTAGCACCAGCAATAGCGACAGCGACCGCATTCATCCTA
TCATCCAGATCAACCGCAAATACATCCTCCCCAAATTTGCGAATCCGAAG
GACATGCGCGCCGATATAATCGGAGGCGTGTTGTATATATAG
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Synonyms
Publications