NO08G03330, NO08G03330 (gene) Nannochloropsis oceanica

Overview
NameNO08G03330
Unique NameNO08G03330
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1376
Alignment locationchr8:917272..918647 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:917272..918647 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO08G03330 vs. NCBI_GenBank
Match: EWM26821.1 (hypothetical protein Naga_100018g19 [Nannochloropsis gaditana])

HSP 1 Score: 371.3 bits (952), Expect = 3.300e-99
Identity = 183/299 (61.20%), Postives = 220/299 (73.58%), Query Frame = 0 
Query:   60 ELTPQELNLQRTARTLWVISFGLLWVGLTSHGWQRAHFQGTHEVDGQTYHQTIEAGYGLRDVAYDLTTSHVTVGYASWNMAQGGDILPYTLLLLVQCCMAVATVTGMGVFLAHLRAKCARTADGNSKYMRYSAYAAIPQCIFSSLAAIAWKLIRPDAFHVFCTVDGCVKQTGDGLRVVGLYYAWIAVLSSAVLALFLALTLWRLAHYNDNNDAEEVEVQLVGGYNNHHLAGNVRNNSYRASSSPGTNPLMMGAKVATPHSTRSPAETWNPQTHQAQYSVVGKGNSGSRDSAQPSWLVGV 359
            +LTPQE+NLQ TAR LW +SF LLW+ LTSHGWQRA ++GT EVDGQ YH+   A YGLR++A+DLTTSHV V YASW +A   D LPY L+LLVQ  MA+ATV G GV LAH+RAKCARTA+G +KYMRYSAYAAIP   F+ LA++AWK I   AF+VFCT  GCVK+  +G++ VG+YYAWI  LSS VL+ FL LTLWRL+ Y D+++ EEVE+QLV   +N     N RN ++    S G NPL MGAKV+T  S RSPAE WNPQ+ Q  Y+ VGK  SG   S QPSWL GV
Sbjct:   51 KLTPQEVNLQHTARILWTLSFALLWLSLTSHGWQRAKYEGTREVDGQKYHRAYIANYGLRNIAFDLTTSHVVVPYASWTIALEDDQLPYILILLVQFFMAIATVAGTGVCLAHIRAKCARTAEGTNKYMRYSAYAAIPLLTFTGLASVAWKCIPTSAFYVFCTNAGCVKEDAEGIKAVGVYYAWIGNLSSTVLSFFLFLTLWRLSRYQDSDETEEVEIQLVDDQHNKQAIINARNKAFLVDGSGGVNPLKMGAKVSTSLSIRSPAEAWNPQSAQLPYTAVGKVQSGGFGSTQPSWLTGV 349
The following BLAST results are available for this feature:
BLAST of NO08G03330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26821.13.300e-9961.20hypothetical protein Naga_100018g19 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008687NSK008687Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03330.1NO08G03330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669593gene_3662Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100018g19gene3737Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03330.1NO08G03330.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03330 ID=NO08G03330|Name=NO08G03330|organism=Nannochloropsis oceanica|type=gene|length=1376bp
GGGGGAGGTCGGTCGGACACGTCTCAAAAGCCGTTTCGTTCCTTGTTCTT
TCCCGTTTCGTTTCTTGTTCTTTCCAATACTCGCACGTGAAAAACTACAC
ACGGCGTCCGCACCGCCGCAGCTCACATCACCACGCTATAACCACTAACA
AAGACCAGAATATGCCGCTTTTTTAGCGTCTGAAACTCAGAAACCGACCT
CAACATAATGGATTCCCCGCACAGACACGGCGTGATGCAAGCCATGCAGG
CCAAGGCCGCGGCTGCTGGCGCTGCGCACATGGCCAAGAGTGCCTTGAGC
TCCAGTGCTGCCACCTTAAGCGCGCTTCCCAGCTATGTTGCTGCTAAGGC
TCAGGCTGGCCCTCCCCTTCCGCCCAAGCCCCACGAGTTGACACCCCAAG
AACTGAATCTGCAGCGGACCGCACGGACGCTGTGGGTTATCTCCTTTGGT
CTTTTGTGGGTGGGCTTGACGTCGCATGGCTGGCAGCGGGCGCACTTTCA
AGGAACCCACGAAGTGGATGGGCAGACGTATCATCAGACCATCGAGGCTG
GATATGGATTGCGGGATGTGGCGTATGATCTGACCACGAGCCATGTCACA
GTTGGGTACGCAAGCTGGAATATGGCCCAGGGAGGCGACATCTTGCCCTA
CACCCTCCTTCTTCTCGTGCAATGCTGTATGGCTGTGGCTACTGTAACTG
GGATGGGTGTCTTCCTTGCTCACCTTAGGGCAAAATGTGCGCGTACTGCG
GACGGGAACTCCAAGTACATGCGGTATTCGGCTTATGCTGCCATTCCTCA
GTGCATCTTTAGTTCCCTTGCCGCGATTGCTTGGAAATTAATTCGTCCTG
ATGCTTTCCACGTCTTTTGCACTGTCGATGGTTGCGTGAAACAAACGGGA
GACGGCTTGAGGGTCGTGGGTCTTTACTACGCGTGGATTGCCGTGTTGAG
CTCAGCGGTGCTCGCTCTCTTCCTCGCTCTCACTTTGTGGCGCCTTGCCC
ACTACAATGACAATAACGACGCTGAAGAAGTTGAGGTCCAGCTTGTGGGC
GGCTACAACAATCACCACCTAGCCGGGAACGTCCGCAACAACAGCTATCG
TGCAAGCAGCTCCCCTGGCACCAATCCACTTATGATGGGGGCAAAGGTAG
CGACACCTCACTCCACGCGCTCGCCCGCCGAGACCTGGAATCCCCAAACC
CACCAGGCTCAGTACTCAGTGGTGGGCAAGGGGAATAGTGGGAGCCGTGA
CTCGGCCCAACCGTCGTGGTTGGTCGGCGTATAGATCGGTTGCTCTTGTG
TTTCCGTGTTTGTCTGGCACTACGTGTGTTATATGCCAAAAATGAGGAAA
CCAAATGAAAAGCTACCTTGTGCAAA
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protein sequence of NO08G03330.1

>NO08G03330.1-protein ID=NO08G03330.1-protein|Name=NO08G03330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MDSPHRHGVMQAMQAKAAAAGAAHMAKSALSSSAATLSALPSYVAAKAQA
GPPLPPKPHELTPQELNLQRTARTLWVISFGLLWVGLTSHGWQRAHFQGT
HEVDGQTYHQTIEAGYGLRDVAYDLTTSHVTVGYASWNMAQGGDILPYTL
LLLVQCCMAVATVTGMGVFLAHLRAKCARTADGNSKYMRYSAYAAIPQCI
FSSLAAIAWKLIRPDAFHVFCTVDGCVKQTGDGLRVVGLYYAWIAVLSSA
VLALFLALTLWRLAHYNDNNDAEEVEVQLVGGYNNHHLAGNVRNNSYRAS
SSPGTNPLMMGAKVATPHSTRSPAETWNPQTHQAQYSVVGKGNSGSRDSA
QPSWLVGV*
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Synonyms
Publications