NO08G03330.1, NO08G03330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03330.1
Unique NameNO08G03330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1376
Alignment locationchr8:917272..918647 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:917272..918647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO08G03330.1 vs.
Match: EWM26821.1 (hypothetical protein Naga_100018g19 [Nannochloropsis gaditana])

HSP 1 Score: 406.8 bits (1044), Expect = 7.200e-110
Identity = 209/349 (59.89%), Postives = 252/349 (72.21%), Query Frame = 0
Query:   10 MQAMQAKAAAAGAAHMAKSALSSSAATLSALPSYVAAKAQAGPPLPPKPHELTPQELNLQRTARTLWVISFGLLWVGLTSHGWQRAHFQGTHEVDGQTYHQTIEAGYGLRDVAYDLTTSHVTVGYASWNMAQGGDILPYTLLLLVQCCMAVATVTGMGVFLAHLRAKCARTADGNSKYMRYSAYAAIPQCIFSSLAAIAWKLIRPDAFHVFCTVDGCVKQTGDGLRVVGLYYAWIAVLSSAVLALFLALTLWRLAHYNDNNDAEEVEVQLVGGYNNHHLAGNVRNNSYRASSSPGTNPLMMGAKVATPHSTRSPAETWNPQTHQAQYSVVGKGNSGSRDSAQPSWLVGV 359
            M A Q  A+AAGA  + ++A +S AATLS LP YV AK +  PP PPK  +LTPQE+NLQ TAR LW +SF LLW+ LTSHGWQRA ++GT EVDGQ YH+   A YGLR++A+DLTTSHV V YASW +A   D LPY L+LLVQ  MA+ATV G GV LAH+RAKCARTA+G +KYMRYSAYAAIP   F+ LA++AWK I   AF+VFCT  GCVK+  +G++ VG+YYAWI  LSS VL+ FL LTLWRL+ Y D+++ EEVE+QLV   +N     N RN ++    S G NPL MGAKV+T  S RSPAE WNPQ+ Q  Y+ VGK  SG   S QPSWL GV
Sbjct:    1 MPATQGSASAAGAVSLVQNAFTSGAATLSGLPRYVTAKTRPRPPSPPKAPKLTPQEVNLQHTARILWTLSFALLWLSLTSHGWQRAKYEGTREVDGQKYHRAYIANYGLRNIAFDLTTSHVVVPYASWTIALEDDQLPYILILLVQFFMAIATVAGTGVCLAHIRAKCARTAEGTNKYMRYSAYAAIPLLTFTGLASVAWKCIPTSAFYVFCTNAGCVKEDAEGIKAVGVYYAWIGNLSSTVLSFFLFLTLWRLSRYQDSDETEEVEIQLVDDQHNKQAIINARNKAFLVDGSGGVNPLKMGAKVSTSLSIRSPAEAWNPQSAQLPYTAVGKVQSGGFGSTQPSWLTGV 349          
The following BLAST results are available for this feature:
BLAST of NO08G03330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26821.17.200e-11059.89hypothetical protein Naga_100018g19 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03330NO08G03330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03330.1NO08G03330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03330.1.cds1NO08G03330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03330.1 ID=NO08G03330.1|Name=NO08G03330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1376bp
GGGGGAGGTCGGTCGGACACGTCTCAAAAGCCGTTTCGTTCCTTGTTCTT
TCCCGTTTCGTTTCTTGTTCTTTCCAATACTCGCACGTGAAAAACTACAC
ACGGCGTCCGCACCGCCGCAGCTCACATCACCACGCTATAACCACTAACA
AAGACCAGAATATGCCGCTTTTTTAGCGTCTGAAACTCAGAAACCGACCT
CAACATAATGGATTCCCCGCACAGACACGGCGTGATGCAAGCCATGCAGG
CCAAGGCCGCGGCTGCTGGCGCTGCGCACATGGCCAAGAGTGCCTTGAGC
TCCAGTGCTGCCACCTTAAGCGCGCTTCCCAGCTATGTTGCTGCTAAGGC
TCAGGCTGGCCCTCCCCTTCCGCCCAAGCCCCACGAGTTGACACCCCAAG
AACTGAATCTGCAGCGGACCGCACGGACGCTGTGGGTTATCTCCTTTGGT
CTTTTGTGGGTGGGCTTGACGTCGCATGGCTGGCAGCGGGCGCACTTTCA
AGGAACCCACGAAGTGGATGGGCAGACGTATCATCAGACCATCGAGGCTG
GATATGGATTGCGGGATGTGGCGTATGATCTGACCACGAGCCATGTCACA
GTTGGGTACGCAAGCTGGAATATGGCCCAGGGAGGCGACATCTTGCCCTA
CACCCTCCTTCTTCTCGTGCAATGCTGTATGGCTGTGGCTACTGTAACTG
GGATGGGTGTCTTCCTTGCTCACCTTAGGGCAAAATGTGCGCGTACTGCG
GACGGGAACTCCAAGTACATGCGGTATTCGGCTTATGCTGCCATTCCTCA
GTGCATCTTTAGTTCCCTTGCCGCGATTGCTTGGAAATTAATTCGTCCTG
ATGCTTTCCACGTCTTTTGCACTGTCGATGGTTGCGTGAAACAAACGGGA
GACGGCTTGAGGGTCGTGGGTCTTTACTACGCGTGGATTGCCGTGTTGAG
CTCAGCGGTGCTCGCTCTCTTCCTCGCTCTCACTTTGTGGCGCCTTGCCC
ACTACAATGACAATAACGACGCTGAAGAAGTTGAGGTCCAGCTTGTGGGC
GGCTACAACAATCACCACCTAGCCGGGAACGTCCGCAACAACAGCTATCG
TGCAAGCAGCTCCCCTGGCACCAATCCACTTATGATGGGGGCAAAGGTAG
CGACACCTCACTCCACGCGCTCGCCCGCCGAGACCTGGAATCCCCAAACC
CACCAGGCTCAGTACTCAGTGGTGGGCAAGGGGAATAGTGGGAGCCGTGA
CTCGGCCCAACCGTCGTGGTTGGTCGGCGTATAGATCGGTTGCTCTTGTG
TTTCCGTGTTTGTCTGGCACTACGTGTGTTATATGCCAAAAATGAGGAAA
CCAAATGAAAAGCTACCTTGTGCAAA
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protein sequence of NO08G03330.1

>NO08G03330.1-protein ID=NO08G03330.1-protein|Name=NO08G03330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MDSPHRHGVMQAMQAKAAAAGAAHMAKSALSSSAATLSALPSYVAAKAQA
GPPLPPKPHELTPQELNLQRTARTLWVISFGLLWVGLTSHGWQRAHFQGT
HEVDGQTYHQTIEAGYGLRDVAYDLTTSHVTVGYASWNMAQGGDILPYTL
LLLVQCCMAVATVTGMGVFLAHLRAKCARTADGNSKYMRYSAYAAIPQCI
FSSLAAIAWKLIRPDAFHVFCTVDGCVKQTGDGLRVVGLYYAWIAVLSSA
VLALFLALTLWRLAHYNDNNDAEEVEVQLVGGYNNHHLAGNVRNNSYRAS
SSPGTNPLMMGAKVATPHSTRSPAETWNPQTHQAQYSVVGKGNSGSRDSA
QPSWLVGV*
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mRNA from alignment at chr8:917272..918647+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03330.1 ID=NO08G03330.1|Name=NO08G03330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1376bp|location=Sequence derived from alignment at chr8:917272..918647+ (Nannochloropsis oceanica)
GGGGGAGGTCGGTCGGACACGTCTCAAAAGCCGTTTCGTTCCTTGTTCTT TCCCGTTTCGTTTCTTGTTCTTTCCAATACTCGCACGTGAAAAACTACAC ACGGCGTCCGCACCGCCGCAGCTCACATCACCACGCTATAACCACTAACA AAGACCAGAATATGCCGCTTTTTTAGCGTCTGAAACTCAGAAACCGACCT CAACATAATGGATTCCCCGCACAGACACGGCGTGATGCAAGCCATGCAGG CCAAGGCCGCGGCTGCTGGCGCTGCGCACATGGCCAAGAGTGCCTTGAGC TCCAGTGCTGCCACCTTAAGCGCGCTTCCCAGCTATGTTGCTGCTAAGGC TCAGGCTGGCCCTCCCCTTCCGCCCAAGCCCCACGAGTTGACACCCCAAG AACTGAATCTGCAGCGGACCGCACGGACGCTGTGGGTTATCTCCTTTGGT CTTTTGTGGGTGGGCTTGACGTCGCATGGCTGGCAGCGGGCGCACTTTCA AGGAACCCACGAAGTGGATGGGCAGACGTATCATCAGACCATCGAGGCTG GATATGGATTGCGGGATGTGGCGTATGATCTGACCACGAGCCATGTCACA GTTGGGTACGCAAGCTGGAATATGGCCCAGGGAGGCGACATCTTGCCCTA CACCCTCCTTCTTCTCGTGCAATGCTGTATGGCTGTGGCTACTGTAACTG GGATGGGTGTCTTCCTTGCTCACCTTAGGGCAAAATGTGCGCGTACTGCG GACGGGAACTCCAAGTACATGCGGTATTCGGCTTATGCTGCCATTCCTCA GTGCATCTTTAGTTCCCTTGCCGCGATTGCTTGGAAATTAATTCGTCCTG ATGCTTTCCACGTCTTTTGCACTGTCGATGGTTGCGTGAAACAAACGGGA GACGGCTTGAGGGTCGTGGGTCTTTACTACGCGTGGATTGCCGTGTTGAG CTCAGCGGTGCTCGCTCTCTTCCTCGCTCTCACTTTGTGGCGCCTTGCCC ACTACAATGACAATAACGACGCTGAAGAAGTTGAGGTCCAGCTTGTGGGC GGCTACAACAATCACCACCTAGCCGGGAACGTCCGCAACAACAGCTATCG TGCAAGCAGCTCCCCTGGCACCAATCCACTTATGATGGGGGCAAAGGTAG CGACACCTCACTCCACGCGCTCGCCCGCCGAGACCTGGAATCCCCAAACC CACCAGGCTCAGTACTCAGTGGTGGGCAAGGGGAATAGTGGGAGCCGTGA CTCGGCCCAACCGTCGTGGTTGGTCGGCGTATAGATCGGTTGCTCTTGTG TTTCCGTGTTTGTCTGGCACTACGTGTGTTATATGCCAAAAATGAGGAAA CCAAATGAAAAGCTACCTTGTGCAAA
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Coding sequence (CDS) from alignment at chr8:917272..918647+

>NO08G03330.1 ID=NO08G03330.1|Name=NO08G03330.1|organism=Nannochloropsis oceanica|type=CDS|length=1077bp|location=Sequence derived from alignment at chr8:917272..918647+ (Nannochloropsis oceanica)
ATGGATTCCCCGCACAGACACGGCGTGATGCAAGCCATGCAGGCCAAGGC
CGCGGCTGCTGGCGCTGCGCACATGGCCAAGAGTGCCTTGAGCTCCAGTG
CTGCCACCTTAAGCGCGCTTCCCAGCTATGTTGCTGCTAAGGCTCAGGCT
GGCCCTCCCCTTCCGCCCAAGCCCCACGAGTTGACACCCCAAGAACTGAA
TCTGCAGCGGACCGCACGGACGCTGTGGGTTATCTCCTTTGGTCTTTTGT
GGGTGGGCTTGACGTCGCATGGCTGGCAGCGGGCGCACTTTCAAGGAACC
CACGAAGTGGATGGGCAGACGTATCATCAGACCATCGAGGCTGGATATGG
ATTGCGGGATGTGGCGTATGATCTGACCACGAGCCATGTCACAGTTGGGT
ACGCAAGCTGGAATATGGCCCAGGGAGGCGACATCTTGCCCTACACCCTC
CTTCTTCTCGTGCAATGCTGTATGGCTGTGGCTACTGTAACTGGGATGGG
TGTCTTCCTTGCTCACCTTAGGGCAAAATGTGCGCGTACTGCGGACGGGA
ACTCCAAGTACATGCGGTATTCGGCTTATGCTGCCATTCCTCAGTGCATC
TTTAGTTCCCTTGCCGCGATTGCTTGGAAATTAATTCGTCCTGATGCTTT
CCACGTCTTTTGCACTGTCGATGGTTGCGTGAAACAAACGGGAGACGGCT
TGAGGGTCGTGGGTCTTTACTACGCGTGGATTGCCGTGTTGAGCTCAGCG
GTGCTCGCTCTCTTCCTCGCTCTCACTTTGTGGCGCCTTGCCCACTACAA
TGACAATAACGACGCTGAAGAAGTTGAGGTCCAGCTTGTGGGCGGCTACA
ACAATCACCACCTAGCCGGGAACGTCCGCAACAACAGCTATCGTGCAAGC
AGCTCCCCTGGCACCAATCCACTTATGATGGGGGCAAAGGTAGCGACACC
TCACTCCACGCGCTCGCCCGCCGAGACCTGGAATCCCCAAACCCACCAGG
CTCAGTACTCAGTGGTGGGCAAGGGGAATAGTGGGAGCCGTGACTCGGCC
CAACCGTCGTGGTTGGTCGGCGTATAG
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Synonyms
Publications