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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:917272..918647 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G03330.1 vs.
Match: EWM26821.1 (hypothetical protein Naga_100018g19 [Nannochloropsis gaditana]) HSP 1 Score: 406.8 bits (1044), Expect = 7.200e-110 Identity = 209/349 (59.89%), Postives = 252/349 (72.21%), Query Frame = 0
Query: 10 MQAMQAKAAAAGAAHMAKSALSSSAATLSALPSYVAAKAQAGPPLPPKPHELTPQELNLQRTARTLWVISFGLLWVGLTSHGWQRAHFQGTHEVDGQTYHQTIEAGYGLRDVAYDLTTSHVTVGYASWNMAQGGDILPYTLLLLVQCCMAVATVTGMGVFLAHLRAKCARTADGNSKYMRYSAYAAIPQCIFSSLAAIAWKLIRPDAFHVFCTVDGCVKQTGDGLRVVGLYYAWIAVLSSAVLALFLALTLWRLAHYNDNNDAEEVEVQLVGGYNNHHLAGNVRNNSYRASSSPGTNPLMMGAKVATPHSTRSPAETWNPQTHQAQYSVVGKGNSGSRDSAQPSWLVGV 359
M A Q A+AAGA + ++A +S AATLS LP YV AK + PP PPK +LTPQE+NLQ TAR LW +SF LLW+ LTSHGWQRA ++GT EVDGQ YH+ A YGLR++A+DLTTSHV V YASW +A D LPY L+LLVQ MA+ATV G GV LAH+RAKCARTA+G +KYMRYSAYAAIP F+ LA++AWK I AF+VFCT GCVK+ +G++ VG+YYAWI LSS VL+ FL LTLWRL+ Y D+++ EEVE+QLV +N N RN ++ S G NPL MGAKV+T S RSPAE WNPQ+ Q Y+ VGK SG S QPSWL GV
Sbjct: 1 MPATQGSASAAGAVSLVQNAFTSGAATLSGLPRYVTAKTRPRPPSPPKAPKLTPQEVNLQHTARILWTLSFALLWLSLTSHGWQRAKYEGTREVDGQKYHRAYIANYGLRNIAFDLTTSHVVVPYASWTIALEDDQLPYILILLVQFFMAIATVAGTGVCLAHIRAKCARTAEGTNKYMRYSAYAAIPLLTFTGLASVAWKCIPTSAFYVFCTNAGCVKEDAEGIKAVGVYYAWIGNLSSTVLSFFLFLTLWRLSRYQDSDETEEVEIQLVDDQHNKQAIINARNKAFLVDGSGGVNPLKMGAKVSTSLSIRSPAEAWNPQSAQLPYTAVGKVQSGGFGSTQPSWLTGV 349
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G03330.1 ID=NO08G03330.1|Name=NO08G03330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1376bp GGGGGAGGTCGGTCGGACACGTCTCAAAAGCCGTTTCGTTCCTTGTTCTT TCCCGTTTCGTTTCTTGTTCTTTCCAATACTCGCACGTGAAAAACTACAC ACGGCGTCCGCACCGCCGCAGCTCACATCACCACGCTATAACCACTAACA AAGACCAGAATATGCCGCTTTTTTAGCGTCTGAAACTCAGAAACCGACCT CAACATAATGGATTCCCCGCACAGACACGGCGTGATGCAAGCCATGCAGG CCAAGGCCGCGGCTGCTGGCGCTGCGCACATGGCCAAGAGTGCCTTGAGC TCCAGTGCTGCCACCTTAAGCGCGCTTCCCAGCTATGTTGCTGCTAAGGC TCAGGCTGGCCCTCCCCTTCCGCCCAAGCCCCACGAGTTGACACCCCAAG AACTGAATCTGCAGCGGACCGCACGGACGCTGTGGGTTATCTCCTTTGGT CTTTTGTGGGTGGGCTTGACGTCGCATGGCTGGCAGCGGGCGCACTTTCA AGGAACCCACGAAGTGGATGGGCAGACGTATCATCAGACCATCGAGGCTG GATATGGATTGCGGGATGTGGCGTATGATCTGACCACGAGCCATGTCACA GTTGGGTACGCAAGCTGGAATATGGCCCAGGGAGGCGACATCTTGCCCTA CACCCTCCTTCTTCTCGTGCAATGCTGTATGGCTGTGGCTACTGTAACTG GGATGGGTGTCTTCCTTGCTCACCTTAGGGCAAAATGTGCGCGTACTGCG GACGGGAACTCCAAGTACATGCGGTATTCGGCTTATGCTGCCATTCCTCA GTGCATCTTTAGTTCCCTTGCCGCGATTGCTTGGAAATTAATTCGTCCTG ATGCTTTCCACGTCTTTTGCACTGTCGATGGTTGCGTGAAACAAACGGGA GACGGCTTGAGGGTCGTGGGTCTTTACTACGCGTGGATTGCCGTGTTGAG CTCAGCGGTGCTCGCTCTCTTCCTCGCTCTCACTTTGTGGCGCCTTGCCC ACTACAATGACAATAACGACGCTGAAGAAGTTGAGGTCCAGCTTGTGGGC GGCTACAACAATCACCACCTAGCCGGGAACGTCCGCAACAACAGCTATCG TGCAAGCAGCTCCCCTGGCACCAATCCACTTATGATGGGGGCAAAGGTAG CGACACCTCACTCCACGCGCTCGCCCGCCGAGACCTGGAATCCCCAAACC CACCAGGCTCAGTACTCAGTGGTGGGCAAGGGGAATAGTGGGAGCCGTGA CTCGGCCCAACCGTCGTGGTTGGTCGGCGTATAGATCGGTTGCTCTTGTG TTTCCGTGTTTGTCTGGCACTACGTGTGTTATATGCCAAAAATGAGGAAA CCAAATGAAAAGCTACCTTGTGCAAA back to topprotein sequence of NO08G03330.1 >NO08G03330.1-protein ID=NO08G03330.1-protein|Name=NO08G03330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp MDSPHRHGVMQAMQAKAAAAGAAHMAKSALSSSAATLSALPSYVAAKAQA GPPLPPKPHELTPQELNLQRTARTLWVISFGLLWVGLTSHGWQRAHFQGT HEVDGQTYHQTIEAGYGLRDVAYDLTTSHVTVGYASWNMAQGGDILPYTL LLLVQCCMAVATVTGMGVFLAHLRAKCARTADGNSKYMRYSAYAAIPQCI FSSLAAIAWKLIRPDAFHVFCTVDGCVKQTGDGLRVVGLYYAWIAVLSSA VLALFLALTLWRLAHYNDNNDAEEVEVQLVGGYNNHHLAGNVRNNSYRAS SSPGTNPLMMGAKVATPHSTRSPAETWNPQTHQAQYSVVGKGNSGSRDSA QPSWLVGV* back to topmRNA from alignment at chr8:917272..918647+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G03330.1 ID=NO08G03330.1|Name=NO08G03330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1376bp|location=Sequence derived from alignment at chr8:917272..918647+ (Nannochloropsis oceanica) GGGGGAGGTCGGTCGGACACGTCTCAAAAGCCGTTTCGTTCCTTGTTCTT
TCCCGTTTCGTTTCTTGTTCTTTCCAATACTCGCACGTGAAAAACTACAC
ACGGCGTCCGCACCGCCGCAGCTCACATCACCACGCTATAACCACTAACA
AAGACCAGAATATGCCGCTTTTTTAGCGTCTGAAACTCAGAAACCGACCT
CAACATAATGGATTCCCCGCACAGACACGGCGTGATGCAAGCCATGCAGG
CCAAGGCCGCGGCTGCTGGCGCTGCGCACATGGCCAAGAGTGCCTTGAGC
TCCAGTGCTGCCACCTTAAGCGCGCTTCCCAGCTATGTTGCTGCTAAGGC
TCAGGCTGGCCCTCCCCTTCCGCCCAAGCCCCACGAGTTGACACCCCAAG
AACTGAATCTGCAGCGGACCGCACGGACGCTGTGGGTTATCTCCTTTGGT
CTTTTGTGGGTGGGCTTGACGTCGCATGGCTGGCAGCGGGCGCACTTTCA
AGGAACCCACGAAGTGGATGGGCAGACGTATCATCAGACCATCGAGGCTG
GATATGGATTGCGGGATGTGGCGTATGATCTGACCACGAGCCATGTCACA
GTTGGGTACGCAAGCTGGAATATGGCCCAGGGAGGCGACATCTTGCCCTA
CACCCTCCTTCTTCTCGTGCAATGCTGTATGGCTGTGGCTACTGTAACTG
GGATGGGTGTCTTCCTTGCTCACCTTAGGGCAAAATGTGCGCGTACTGCG
GACGGGAACTCCAAGTACATGCGGTATTCGGCTTATGCTGCCATTCCTCA
GTGCATCTTTAGTTCCCTTGCCGCGATTGCTTGGAAATTAATTCGTCCTG
ATGCTTTCCACGTCTTTTGCACTGTCGATGGTTGCGTGAAACAAACGGGA
GACGGCTTGAGGGTCGTGGGTCTTTACTACGCGTGGATTGCCGTGTTGAG
CTCAGCGGTGCTCGCTCTCTTCCTCGCTCTCACTTTGTGGCGCCTTGCCC
ACTACAATGACAATAACGACGCTGAAGAAGTTGAGGTCCAGCTTGTGGGC
GGCTACAACAATCACCACCTAGCCGGGAACGTCCGCAACAACAGCTATCG
TGCAAGCAGCTCCCCTGGCACCAATCCACTTATGATGGGGGCAAAGGTAG
CGACACCTCACTCCACGCGCTCGCCCGCCGAGACCTGGAATCCCCAAACC
CACCAGGCTCAGTACTCAGTGGTGGGCAAGGGGAATAGTGGGAGCCGTGA
CTCGGCCCAACCGTCGTGGTTGGTCGGCGTATAGATCGGTTGCTCTTGTG
TTTCCGTGTTTGTCTGGCACTACGTGTGTTATATGCCAAAAATGAGGAAA
CCAAATGAAAAGCTACCTTGTGCAAA back to topCoding sequence (CDS) from alignment at chr8:917272..918647+ >NO08G03330.1 ID=NO08G03330.1|Name=NO08G03330.1|organism=Nannochloropsis oceanica|type=CDS|length=1077bp|location=Sequence derived from alignment at chr8:917272..918647+ (Nannochloropsis oceanica) ATGGATTCCCCGCACAGACACGGCGTGATGCAAGCCATGCAGGCCAAGGC CGCGGCTGCTGGCGCTGCGCACATGGCCAAGAGTGCCTTGAGCTCCAGTG CTGCCACCTTAAGCGCGCTTCCCAGCTATGTTGCTGCTAAGGCTCAGGCT GGCCCTCCCCTTCCGCCCAAGCCCCACGAGTTGACACCCCAAGAACTGAA TCTGCAGCGGACCGCACGGACGCTGTGGGTTATCTCCTTTGGTCTTTTGT GGGTGGGCTTGACGTCGCATGGCTGGCAGCGGGCGCACTTTCAAGGAACC CACGAAGTGGATGGGCAGACGTATCATCAGACCATCGAGGCTGGATATGG ATTGCGGGATGTGGCGTATGATCTGACCACGAGCCATGTCACAGTTGGGT ACGCAAGCTGGAATATGGCCCAGGGAGGCGACATCTTGCCCTACACCCTC CTTCTTCTCGTGCAATGCTGTATGGCTGTGGCTACTGTAACTGGGATGGG TGTCTTCCTTGCTCACCTTAGGGCAAAATGTGCGCGTACTGCGGACGGGA ACTCCAAGTACATGCGGTATTCGGCTTATGCTGCCATTCCTCAGTGCATC TTTAGTTCCCTTGCCGCGATTGCTTGGAAATTAATTCGTCCTGATGCTTT CCACGTCTTTTGCACTGTCGATGGTTGCGTGAAACAAACGGGAGACGGCT TGAGGGTCGTGGGTCTTTACTACGCGTGGATTGCCGTGTTGAGCTCAGCG GTGCTCGCTCTCTTCCTCGCTCTCACTTTGTGGCGCCTTGCCCACTACAA TGACAATAACGACGCTGAAGAAGTTGAGGTCCAGCTTGTGGGCGGCTACA ACAATCACCACCTAGCCGGGAACGTCCGCAACAACAGCTATCGTGCAAGC AGCTCCCCTGGCACCAATCCACTTATGATGGGGGCAAAGGTAGCGACACC TCACTCCACGCGCTCGCCCGCCGAGACCTGGAATCCCCAAACCCACCAGG CTCAGTACTCAGTGGTGGGCAAGGGGAATAGTGGGAGCCGTGACTCGGCC CAACCGTCGTGGTTGGTCGGCGTATAG back to top
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