NO08G03160, NO08G03160 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G03160
Unique Name	NO08G03160
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1666
Alignment location	chr8:870279..871944 -

Link to JBrowse

Properties


Property Name	Value
Description	Agmatine deiminase

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:870279..871944 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004668	protein-arginine deiminase activity
GO:0004668	protein-arginine deiminase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0009446	putrescine biosynthetic process
GO:0009446	putrescine biosynthetic process

Vocabulary: **INTERPRO**
Term	Definition
IPR007466	Peptidyl-Arg-deiminase_porph

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane
GO:0016020	membrane

Homology

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BLAST of NO08G03160 vs. NCBI_GenBank
Match: EWM26737.1 (agmatine deiminase [Nannochloropsis gaditana])

HSP 1 Score: 572.0 bits (1473), Expect = 1.700e-159
Identity = 282/486 (58.02%), Postives = 336/486 (69.14%), Query Frame = 0

Query:    6 SAAAPAFIGFVAGSAAVMTLVAIYDLLDLGPTYRDRXXXXXXXXXXXXXXXXXXXXXXGCRPIPSFLTAMYLYEREIGLGEALPSTPLNDGFHMPAEWEHHAGCWILFPWQKDNWDHDAEPAQKAYAHVANAIQQHGNEQVTVGVRSEDWSVARALLNPAVRVVELGCDDAWVRDSGPTFVVKDDQEKETREVRGVDWNFNAYGGNYEPCERDQLVARKLLEVEGVRRYHAPVVMEGGSFHVDGEGTCIVTEECLLHPSRNPGLSKEEIEEYLKTYLNVERVIWLEWGVFGDQDTNGHVDNMCCFKGPGEVILHWTDDENDPQFERSWSAYITLTKEVDAKGRALRIHKMPSPGPLFYQEEDMDGLVVGERGGEVDKGGKK-----------------------------VVGARMAASYVNFYLANEAVVVPQFLDPKDEEAIDFLQLLYPERRVVGVYSRDILLGGGNIHCITQQQPANVFDAF 463
            +A+   F+GFV GSA V+  VAI DLLDL P  R                          RP+PSFL AMYLYER++G GE +PS+P  DGF MPA WE HAGCW+LFP ++D   H+ E  Q  YAH+ANAIQ+HG+EQVTVGVR+EDW  ARALL+P VRVVE+  D AW RDSGPTFVV+DD E+E REVRGVDW     G    PC RDQLVARK+LEVE +RRY AP+VM GG FHVDGEGTC+VTEE LL P++ P L+KE +EE L+ YL VERVIWLE GV+GD+D  G VD++ CFKGPGEVILHWTDDE DPQF+RSWSA+I LT+  DAKGRALRIHKMP PGP+F ++  ++G ++   G      G++                                    ASYVNFY+ANEA+VVPQF+DPKDEEAI+ LQ LYPERRV+GV +RD+L GGGNIHC+TQQQP N FDAF
Sbjct:   48 AASMLLFLGFVMGSATVIAAVAIQDLLDLDPILRGWLKKRRNSKGDGSNGSPLK------RPVPSFLEAMYLYERKVGWGEVIPSSPQEDGFCMPAAWEAHAGCWLLFPCRRDRRAHELEGVQTVYAHIANAIQEHGSEQVTVGVRAEDWEEARALLHPGVRVVEMESDSAWARDSGPTFVVRDDGEEEMREVRGVDWAMGTEG----PCGRDQLVARKVLEVEKIRRYAAPLVMGGGCFHVDGEGTCLVTEESLLSPTQRPSLAKEAVEEVLRRYLGVERVIWLEKGVYGDEDRQGRVDSLACFKGPGEVILHWTDDEMDPQFDRSWSAFIRLTQATDAKGRALRIHKMPMPGPIFDEQGGVEGSLLS--GAGCTPAGREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPASYVNFYIANEAIVVPQFMDPKDEEAIELLQFLYPERRVIGVCTRDLLRGGGNIHCVTQQQPTNQFDAF 521

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BLAST of NO08G03160 vs. NCBI_GenBank
Match: KCW83787.1 (hypothetical protein EUGRSUZ_B00659 [Eucalyptus grandis])

HSP 1 Score: 425.6 bits (1093), Expect = 1.900e-115
Identity = 204/379 (53.83%), Postives = 270/379 (71.24%), Query Frame = 0

Query:   86 EALPSTPLNDGFHMPAEWEHHAGCWILFPWQKDNWDHDAEPAQKAYAHVANAIQQHGNEQVTVGVRSEDWSVARALLNPAVRVVELGCDDAWVRDSGPTFVVKDDQEKETREVRGVDWNFNAYGGNYEPCER----DQLVARKLLEVEGVRRYHAPVVMEGGSFHVDGEGTCIVTEECLLHPSRNPGLSKEEIEEYLKTYLNVERVIWLEWGVFGDQDTNGHVDNMCCFKGPGEVILHWTDDENDPQFERSWSAYITLTKEVDAKGRALRIHKMPSPGPLFYQEEDMDGLVVGERGGEVDKGGKKVVGARMAASYVNFYLANEAVVVPQFLDPK-DEEAIDFLQLLYPERRVVGVY-SRDILLGGGNIHCITQQQPANV 459
            EA+  TP++ GFHMPAEWE H+ CWI +P + DNW  +A PAQ+ +A VA AI +   E VTV   +  W  AR +L   VRV+ELG +D+W+RD+GPTFVV+D      R++  +DWNFN+YGG  E C +    D L+A+K+L+VE V R+   +++EGGS HVDGEGTC+ TEECLL+ +RNP L++E+IE+ LK YL V+++IWL  G++GD DTNGH+DNMCCF  PG V+L WTDDE D Q+ERS  AY  L+   DA GR L+I K+  PGPL+  EE+  G+V  + G  V     ++ G R+AASYVNFY+AN+AV+VPQF DPK D+EA   L   +P+RRVV +  +R+I+LGGGNIHCITQQQPA V
Sbjct:   17 EAMEGTPVSHGFHMPAEWERHSRCWIGWPERPDNWRDNAAPAQRMFAKVAAAISEF--EPVTVCASTAQWENARKMLPAKVRVIELGMNDSWLRDTGPTFVVRDGSPGHERKIAAIDWNFNSYGGIEEGCYKDWSLDLLIAKKILQVEEVPRFSQEIILEGGSIHVDGEGTCLTTEECLLNKNRNPQLTREQIEDVLKAYLGVKKIIWLPRGLYGDDDTNGHIDNMCCFVKPGTVLLSWTDDEKDLQYERSMEAYKVLSNATDAAGRKLQIIKLHVPGPLYLTEEEAAGVV--QDGDAV----PRLPGTRLAASYVNFYIANQAVIVPQFGDPKWDDEAARVLGDAFPDRRVVRIEGAREIVLGGGNIHCITQQQPATV 387

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BLAST of NO08G03160 vs. NCBI_GenBank
Match: XP_010031338.1 (PREDICTED: agmatine deiminase [Eucalyptus grandis])

HSP 1 Score: 422.2 bits (1084), Expect = 2.100e-114
Identity = 202/377 (53.58%), Postives = 268/377 (71.09%), Query Frame = 0

Query:   88 LPSTPLNDGFHMPAEWEHHAGCWILFPWQKDNWDHDAEPAQKAYAHVANAIQQHGNEQVTVGVRSEDWSVARALLNPAVRVVELGCDDAWVRDSGPTFVVKDDQEKETREVRGVDWNFNAYGGNYEPCER----DQLVARKLLEVEGVRRYHAPVVMEGGSFHVDGEGTCIVTEECLLHPSRNPGLSKEEIEEYLKTYLNVERVIWLEWGVFGDQDTNGHVDNMCCFKGPGEVILHWTDDENDPQFERSWSAYITLTKEVDAKGRALRIHKMPSPGPLFYQEEDMDGLVVGERGGEVDKGGKKVVGARMAASYVNFYLANEAVVVPQFLDPK-DEEAIDFLQLLYPERRVVGVY-SRDILLGGGNIHCITQQQPANV 459
            +  TP++ GFHMPAEWE H+ CWI +P + DNW  +A PAQ+ +A VA AI +   E VTV   +  W  AR +L   VRV+ELG +D+W+RD+GPTFVV+D      R++  +DWNFN+YGG  E C +    D L+A+K+L+VE V R+   +++EGGS HVDGEGTC+ TEECLL+ +RNP L++E+IE+ LK YL V+++IWL  G++GD DTNGH+DNMCCF  PG V+L WTDDE D Q+ERS  AY  L+   DA GR L+I K+  PGPL+  EE+  G+V  + G  V     ++ G R+AASYVNFY+AN+AV+VPQF DPK D+EA   L   +P+RRVV +  +R+I+LGGGNIHCITQQQPA V
Sbjct:    1 MEGTPVSHGFHMPAEWERHSRCWIGWPERPDNWRDNAAPAQRMFAKVAAAISEF--EPVTVCASTAQWENARKMLPAKVRVIELGMNDSWLRDTGPTFVVRDGSPGHERKIAAIDWNFNSYGGIEEGCYKDWSLDLLIAKKILQVEEVPRFSQEIILEGGSIHVDGEGTCLTTEECLLNKNRNPQLTREQIEDVLKAYLGVKKIIWLPRGLYGDDDTNGHIDNMCCFVKPGTVLLSWTDDEKDLQYERSMEAYKVLSNATDAAGRKLQIIKLHVPGPLYLTEEEAAGVV--QDGDAV----PRLPGTRLAASYVNFYIANQAVIVPQFGDPKWDDEAARVLGDAFPDRRVVRIEGAREIVLGGGNIHCITQQQPATV 369

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BLAST of NO08G03160 vs. NCBI_GenBank
Match: AIU50686.1 (EMB1873 protein, partial [Eucalyptus grandis])

HSP 1 Score: 409.8 bits (1052), Expect = 1.100e-110
Identity = 197/367 (53.68%), Postives = 259/367 (70.57%), Query Frame = 0

Query:   92 PLNDGFHMPAEWEHHAGCWILFPWQKDNWDHDAEPAQKAYAHVANAIQQHGNEQVTVGVRSEDWSVARALLNPAVRVVELGCDDAWVRDSGPTFVVKDDQEKETREVRGVDWNFNAYGGN--YEPCERDQLVARKLLEVEGVRRYHAPVVMEGGSFHVDGEGTCIVTEECLLHPSRNPGLSKEEIEEYLKTYLNVERVIWLEWGVFGDQDTNGHVDNMCCFKGPGEVILHWTDDENDPQFERSWSAYITLTKEVDAKGRALRIHKMPSPGPLFYQEEDMDGLVVGERGGEVDKGGKKVVGARMAASYVNFYLANEAVVVPQFLDPKDEEAIDFLQLLYPERRVVGVY-SRDILLGGGNIHCITQQQP 456
            P++ GFHMPAEWE H+ CWI +P + DNW  +A PAQ+ +A VA AI +   E VTV   +  W  AR +L P VRV+ELG +D+W+RD+GPTFVV+D  E   R++  +DWNFN+YGG   Y+    D L+A+K+L+VE V R+   +++EGGS HVDGEGTC+ TEECLL+ +RNP L++E+IE+ LK YL V+++IWL  G++GD DTNGH+DNMCCF  PG V+L WTDDE D Q+ERS  AY  L+   DA GR L+I K+  PGPL+  EE        E  G  D    ++ G R+AASYVNFY+AN+AV+VPQF D  D+EA   L   +P+RRVV +  +R+I+LGGGNIHCITQQQP
Sbjct:    1 PVSHGFHMPAEWERHSRCWIGWPERPDNWRDNAAPAQRMFAKVAAAISEF--EPVTVCASTAQWENARKML-PKVRVIELGMNDSWLRDTGPTFVVRDGHE---RKIAAIDWNFNSYGGEGCYKDWSLDLLIAKKILQVEEVPRFSQEIILEGGSIHVDGEGTCLTTEECLLNKNRNPQLTREQIEDVLKAYLGVKKIIWLPRGLYGDDDTNGHIDNMCCFVKPGTVLLSWTDDEKDLQYERSMEAYKVLSNATDAAGRKLQIIKLHVPGPLYLTEE--------EAAGVQDDAVPRLPGTRLAASYVNFYIANQAVIVPQFGDKWDDEAARVLGDAFPDRRVVRIEGAREIVLGGGNIHCITQQQP 353

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BLAST of NO08G03160 vs. NCBI_GenBank
Match: XP_015943959.1 (agmatine deiminase isoform X2 [Arachis duranensis])

HSP 1 Score: 409.5 bits (1051), Expect = 1.400e-110
Identity = 197/376 (52.39%), Postives = 257/376 (68.35%), Query Frame = 0

Query:   88 LPSTPLNDGFHMPAEWEHHAGCWILFPWQKDNWDHDAEPAQKAYAHVANAIQQHGNEQVTVGVRSEDWSVARALLNPAVRVVELGCDDAWVRDSGPTFVVK-DDQEKETREVRGVDWNFNAYGGNYEPC----ERDQLVARKLLEVEGVRRYHAPVVMEGGSFHVDGEGTCIVTEECLLHPSRNPGLSKEEIEEYLKTYLNVERVIWLEWGVFGDQDTNGHVDNMCCFKGPGEVILHWTDDENDPQFERSWSAYITLTKEVDAKGRALRIHKMPSPGPLFYQEEDMDGLVVGERGGEVDKGGKKVVGARMAASYVNFYLANEAVVVPQFLDPK-DEEAIDFLQLLYPERRVVGVY-SRDILLGGGNIHCITQQQPA 457
            L   P + GFHMPAEWE H  CW+ +P + DNW  +A PAQ  +A VA+AI +   E VTV   S  W  AR +L   +RV+E+  +D+W RD+GPTFVVK  +  K  + + G+DWNFN++GG  + C      D LVARK+L VE V R+   +++EGGS HVDGEGTC+ TEECLL+ +RNP +SK +IE+ LKTYL V + IWL  G++GD DTNGH+DNMCCF  PG V+L WTDDE+DPQ+ERS  AY  L+ E DA GR   I K+  PGPL+  E++  G+V G      D G  ++ G R+AASYVNFY+AN  ++VPQF D K D+EA+  L   +P+ +VVG+  SR+I+L GGNIHCITQQQPA
Sbjct:    4 LQGLPASHGFHMPAEWEPHTQCWMGWPERPDNWRENAVPAQDVFAKVASAISRF--EDVTVCASSGQWENARRMLPEHIRVLEISMNDSWFRDTGPTFVVKRSESGKAEQTIAGIDWNFNSWGGLEDGCYTDWSLDILVARKILAVERVHRFSHSMILEGGSIHVDGEGTCLTTEECLLNKNRNPHMSKNQIEDQLKTYLGVSKTIWLSRGLYGDDDTNGHIDNMCCFTRPGVVLLSWTDDESDPQYERSMEAYSLLSNETDASGRKFEIIKLHVPGPLYMTEKEAAGVVQG------DDGKARLPGIRLAASYVNFYIANGGIIVPQFGDKKWDDEAVRVLSKAFPDHKVVGIEGSREIVLAGGNIHCITQQQPA 371

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BLAST of NO08G03160 vs. NCBI_GenBank
Match: WP_042354433.1 (agmatine deiminase [Bacillus rubiinfantis])

HSP 1 Score: 409.1 bits (1050), Expect = 1.900e-110
Identity = 205/378 (54.23%), Postives = 260/378 (68.78%), Query Frame = 0

Query:   86 EALPSTPLNDGFHMPAEWEHHAGCWILFPWQKDNWDHDAEPAQKAYAHVANAIQQHGNEQVTVGVRSEDWSVARALLNPAVRVVELGCDDAWVRDSGPTFVVKDDQEKETREVRGVDWNFNAYG----GNYEPCERDQLVARKLLEVEGVRRYHA-PVVMEGGSFHVDGEGTCIVTEECLLHPSRNPGLSKEEIEEYLKTYLNVERVIWLEWGVFGDQDTNGHVDNMCCFKGPGEVILHWTDDENDPQFERSWSAYITLTKEVDAKGRALRIHKMPSPGPLFYQEEDMDGLVVGERGGEVDKGGKKVVGARMAASYVNFYLANEAVVVPQFLDPKDEEAIDFLQLLYPERRVVGVYSRDILLGGGNIHCITQQQPANV 459
            + L STP  DGF MP E+EHH GCW+++P + DNW + A+PAQ A+  VA AI Q   E VT+ V  E +  AR +L   VRVVE+  DD+W+RD GPTFV+ D    ET EVR VDW FNA+G    G Y P + D  VA+K+ ++EGV RY     V+EGGS HVDGEGT IVTEECLL   RNP L+K EIE+ LK YLNV+++IWL  G++ D +TNGHVDN+C F  PGEV+L WTDDE DPQ+E S +AY  L+ E DAKGR L IHK+  P P+   +E+ +G+        VD    +  G R+AASY N+Y AN  V++P F DP DE+A+   + +YPER+VVGVY+R+ILLGGGNIHCITQQQP+ V
Sbjct:    2 KTLHSTPRKDGFRMPGEFEHHDGCWMIWPERTDNWRYGAKPAQHAFVDVATAIAQF--EPVTMVVSREQYDTARHMLPEHVRVVEMATDDSWMRDVGPTFVIND----ETGEVRAVDWRFNAWGGLVDGLYFPWDNDDHVAQKVCDLEGVDRYRLNNFVLEGGSIHVDGEGTLIVTEECLLSEGRNPNLTKLEIEDVLKEYLNVDKIIWLNRGIYLD-ETNGHVDNICNFVRPGEVVLAWTDDETDPQYEISKAAYEVLSNERDAKGRKLTIHKLYVPSPVLITKEESEGV------DSVDGTLPREEGDRLAASYANYYTANGGVIIPLFGDPNDEKALALFREIYPERKVVGVYAREILLGGGNIHCITQQQPSGV 366

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BLAST of NO08G03160 vs. NCBI_GenBank
Match: XP_015943982.1 (agmatine deiminase [Arachis duranensis] >XP_020989963.1 agmatine deiminase [Arachis duranensis])

HSP 1 Score: 409.1 bits (1050), Expect = 1.900e-110
Identity = 196/375 (52.27%), Postives = 257/375 (68.53%), Query Frame = 0

Query:   88 LPSTPLNDGFHMPAEWEHHAGCWILFPWQKDNWDHDAEPAQKAYAHVANAIQQHGNEQVTVGVRSEDWSVARALLNPAVRVVELGCDDAWVRDSGPTFVVKDDQEKETREVRGVDWNFNAYGGNYEPC----ERDQLVARKLLEVEGVRRYHAPVVMEGGSFHVDGEGTCIVTEECLLHPSRNPGLSKEEIEEYLKTYLNVERVIWLEWGVFGDQDTNGHVDNMCCFKGPGEVILHWTDDENDPQFERSWSAYITLTKEVDAKGRALRIHKMPSPGPLFYQEEDMDGLVVGERGGEVDKGGKKVVGARMAASYVNFYLANEAVVVPQFLDPK-DEEAIDFLQLLYPERRVVGVY-SRDILLGGGNIHCITQQQPA 457
            L   P + GFHMPAEWE H  CW+ +P + DNW  +A PAQ  +A VA+AI +   E VTV   S  W  AR +L   +RV+E+  +D+W RD+GPTFVVK   E   + + G+DWNFN++GG  + C      D LVARK+L +E V R+   +++EGGS HVDGEGTC+ TEECLL+ +RNP +SK +IE+ LKTYL V ++IWL  G++GD DTNGH+DNMCCF  PG V+L WTDDE+DPQ+ERS  AY  L+ E DA GR   I K+  PGPL+  E++  G+V G      D G  ++ G R+AASYVNFY+AN  ++VPQF D K D+EA+  L   +P+ +VVG+  SR+I+L GGNIHCITQQQPA
Sbjct:    3 LQGLPASHGFHMPAEWEPHTQCWMGWPERPDNWRENAVPAQDVFAKVASAISRF--EDVTVCASSGQWGNARRMLPEHIRVLEISMNDSWFRDTGPTFVVK-RSESGKQTIAGIDWNFNSWGGLEDGCYTDWSLDILVARKILAIERVHRFSHSMILEGGSIHVDGEGTCLTTEECLLNKNRNPHMSKNQIEDQLKTYLGVSKIIWLPRGLYGDDDTNGHIDNMCCFTRPGVVLLSWTDDESDPQYERSMEAYSLLSNETDANGRKFEIIKLHVPGPLYMTEKEAAGVVQG------DDGKARLPGTRLAASYVNFYIANGGIIVPQFGDKKWDDEAVRVLSKAFPDHKVVGIEGSREIVLAGGNIHCITQQQPA 368

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BLAST of NO08G03160 vs. NCBI_GenBank
Match: WP_075981321.1 (agmatine deiminase [Bacillus massilionigeriensis])

HSP 1 Score: 407.9 bits (1047), Expect = 4.200e-110
Identity = 198/376 (52.66%), Postives = 262/376 (69.68%), Query Frame = 0

Query:   88 LPSTPLNDGFHMPAEWEHHAGCWILFPWQKDNWDHDAEPAQKAYAHVANAIQQHGNEQVTVGVRSEDWSVARALLNPAVRVVELGCDDAWVRDSGPTFVVKDDQEKETREVRGVDWNFNAYG----GNYEPCERDQLVARKLLEVEGVRRYH-APVVMEGGSFHVDGEGTCIVTEECLLHPSRNPGLSKEEIEEYLKTYLNVERVIWLEWGVFGDQDTNGHVDNMCCFKGPGEVILHWTDDENDPQFERSWSAYITLTKEVDAKGRALRIHKMPSPGPLFYQEEDMDGLVVGERGGEVDKGGKKVVGARMAASYVNFYLANEAVVVPQFLDPKDEEAIDFLQLLYPERRVVGVYSRDILLGGGNIHCITQQQPANV 459
            L S P  DG+ MPAE+EHH GCW+++P + DNW + A+PAQ+A+  VA AI +   E VT+ V  + +  AR +L P +RVVE+  DD+W+RD GPTFVV D    ET +VRG+DW FN++G    G Y P + D  VA+K+ ++EG+ RY     V+EGGS HVDGEGT IVTEECLL   RNP LS++EIE+ L  YLNVE+++WL+ G++ D +TNGHVDN+C F  PGEV+L WTDD+ DPQ+E S   Y  L+ E DAKGR   IHK+  P P+   +E+ +G+ V      VD    ++ G R+AASY N+Y AN  VV+P F DP DE+A+   + LYP+R+VVGVY+R+ILLGGGNIHCITQQQP+ V
Sbjct:    4 LHSNPKMDGYRMPAEFEHHEGCWMIWPERTDNWRYGAKPAQRAFTEVAKAIAEF--EPVTMVVNRDQYDTARHMLPPHIRVVEMATDDSWMRDVGPTFVVND----ETGKVRGIDWTFNSWGGLVDGLYFPWDNDDHVAQKVCDLEGIDRYRLTNFVLEGGSIHVDGEGTLIVTEECLLSEGRNPSLSRKEIEDILMDYLNVEKIVWLKRGIYLD-ETNGHVDNICNFVRPGEVVLAWTDDQTDPQYEISKECYNILSNETDAKGRKFIIHKLHVPSPILITKEESEGVDV------VDGTLPRMEGDRLAASYANYYTANGGVVIPLFNDPNDEKALALFRELYPDRKVVGVYAREILLGGGNIHCITQQQPSGV 366

[Close]

BLAST of NO08G03160 vs. NCBI_GenBank
Match: XP_009122428.1 (PREDICTED: agmatine deiminase [Brassica rapa] >XP_013715748.1 agmatine deiminase isoform X1 [Brassica napus])

HSP 1 Score: 404.8 bits (1039), Expect = 3.500e-109
Identity = 198/375 (52.80%), Postives = 255/375 (68.00%), Query Frame = 0

Query:   91 TPLNDGFHMPAEWEHHAGCWILFPWQKDNWDHDAEPAQKAYAHVANAIQQHGNEQVTVGVRSEDWSVARALLNPAVRVVELGCDDAWVRDSGPTFVVKDDQEK---ETREVRGVDWNFNAYGGNYEPC----ERDQLVARKLLEVEGVRRYHAPVVMEGGSFHVDGEGTCIVTEECLLHPSRNPGLSKEEIEEYLKTYLNVERVIWLEWGVFGDQDTNGHVDNMCCFKGPGEVILHWTDDENDPQFERSWSAYITLTKEVDAKGRALRIHKMPSPGPLFYQEEDMDGLVVGERGGEVDKGGKKVVGARMAASYVNFYLANEAVVVPQFLDPK-DEEAIDFLQLLYPERRVVGV-YSRDILLGGGNIHCITQQQPA 457
            +P + GF+MPAEWE HA  WI +P ++DNW H+A PAQ+ +  VA AI     E VTV   S  W  AR  L   +RVVE+  +D+W RDSGPTFVV+    K    TR + GVDWNFNA+GG  + C      D LV++K+L VE + R+   +++EGGS HVDGEGTC+VTEECLL+ +RNP +SKE+IEE LK YL V+ +IWL  G++GD DTNGH+DNMCCF  PG V+L WTDDE DPQ+ERS  A    +  VDA+GR +++ K+  PGPL+  EE+  G++      +  +   ++ G R+AASYVNFYLAN  V+VPQF D K DEEAI  L   YP   VVG+  +R+I+L GGNIHCITQQQPA
Sbjct:    7 SPADHGFYMPAEWEPHAQTWIGWPERQDNWRHNAVPAQRVFVDVAKAISVF--EPVTVCASSAQWENARKQLPEEIRVVEMSMNDSWFRDSGPTFVVRKRPSKLSSLTRNIAGVDWNFNAWGGADDGCYNDWSHDLLVSKKILAVERIPRFQHSMILEGGSIHVDGEGTCLVTEECLLNKNRNPHMSKEQIEEELKRYLGVQTIIWLPRGLYGDDDTNGHIDNMCCFAKPGVVLLSWTDDETDPQYERSVEALSVFSNSVDARGRKIQVVKLHVPGPLYMTEEESSGII------QEGEAKPRLAGTRLAASYVNFYLANGGVIVPQFGDAKRDEEAIRVLSETYPHHSVVGIENAREIVLAGGNIHCITQQQPA 373

[Close]

BLAST of NO08G03160 vs. NCBI_GenBank
Match: WP_054521589.1 (agmatine deiminase [Thermanaerothrix daxensis] >KPL83185.1 agmatine deiminase [Thermanaerothrix daxensis])

HSP 1 Score: 404.4 bits (1038), Expect = 4.600e-109
Identity = 198/376 (52.66%), Postives = 262/376 (69.68%), Query Frame = 0

Query:   84 LGEALPSTPLNDGFHMPAEWEHHAGCWILFPWQKDNWDHDAEPAQKAYAHVANAIQQHGNEQVTVGVRSEDWSVARALLNPAVRVVELGCDDAWVRDSGPTFVVKDDQEKETREVRGVDWNFNAY----GGNYEPCERDQLVARKLLEVEGVRRYHAPVVMEGGSFHVDGEGTCIVTEECLLHPSRNPGLSKEEIEEYLKTYLNVERVIWLEWGVFGDQDTNGHVDNMCCFKGPGEVILHWTDDENDPQFERSWSAYITLTKEVDAKGRALRIHKMPSPGPLFYQEEDMDGLVVGERGGEVDKGGKKVVGARMAASYVNFYLANEAVVVPQFLDPKDEEAIDFLQLLYPERRVVGVYSRDILLGGGNIHCITQQQP 456
            +   L STP  DGF MP E+E HAGCW+L+P + DNW   A+PAQ+A+  VA AI Q   E VT+GV +  +  AR+LL P VRVVE+  +D+W+RD GPTFV         +E+R +DW FNA+    GG Y P ++D LVARK+ E+E V  Y AP+V+EGGS HVDGEGT I TEECLL+P+RNP L++E+IE +L+ YLNVE +IWL  GV+ D +T+GHVDN+CCF  PG V L WT+D++DPQ+E S  AY  L +  DA+GR L +HK+  P P++  +E+ + +        ++    +  G R+AASY+NFY+AN   VVP F DP D++A+  LQ L PER+VVGVY+R+ILLGGGNIHCITQQQP
Sbjct:    1 MSRRLNSTPRQDGFRMPGEFEPHAGCWMLWPERPDNWRLGAKPAQRAFVEVAKAISQF--EPVTMGVSAGQFLNARSLLPPEVRVVEMSYNDSWMRDCGPTFVTNG------KEIRAIDWEFNAWGGLQGGLYFPWDQDNLVARKVAEIERVDVYKAPLVLEGGSIHVDGEGTLITTEECLLNPNRNPELTREQIEAFLQEYLNVETIIWLPRGVYND-ETSGHVDNLCCFIRPGVVALTWTEDKSDPQYEISAEAYEILCQAKDARGRRLEVHKIHQPNPVYITKEESEWV------DAIEGTLPRREGDRLAASYINFYMANGGAVVPVFNDPHDKQALAALQELMPERKVVGVYAREILLGGGNIHCITQQQP 361

The following BLAST results are available for this feature:

BLAST of NO08G03160 vs. NCBI_GenBank

BLAST of NO08G03160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM26737.1	1.700e-159	58.02	agmatine deiminase [Nannochloropsis gaditana]	[more]
KCW83787.1	1.900e-115	53.83	hypothetical protein EUGRSUZ_B00659 [Eucalyptus gr...	[more]
XP_010031338.1	2.100e-114	53.58	PREDICTED: agmatine deiminase [Eucalyptus grandis]	[more]
AIU50686.1	1.100e-110	53.68	EMB1873 protein, partial [Eucalyptus grandis]	[more]
XP_015943959.1	1.400e-110	52.39	agmatine deiminase isoform X2 [Arachis duranensis]	[more]
WP_042354433.1	1.900e-110	54.23	agmatine deiminase [Bacillus rubiinfantis]	[more]
XP_015943982.1	1.900e-110	52.27	agmatine deiminase [Arachis duranensis] >XP_020989...	[more]
WP_075981321.1	4.200e-110	52.66	agmatine deiminase [Bacillus massilionigeriensis]	[more]
XP_009122428.1	3.500e-109	52.80	PREDICTED: agmatine deiminase [Brassica rapa] >XP_...	[more]
WP_054521589.1	4.600e-109	52.66	agmatine deiminase [Thermanaerothrix daxensis] >KP...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL109	nonsL109	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR083	ncniR083	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR141	ngnoR141	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK008714	NSK008714	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO08G03160.1	NO08G03160.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582884	gene_3646	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100001g224	gene3756	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO08G03160.1	NO08G03160.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO08G03160 ID=NO08G03160|Name=NO08G03160|organism=Nannochloropsis oceanica|type=gene|length=1666bp
CCAATTGTACACAAAATTACTGACTCTGTGCTCAGCCATGACTTCACATC
TTCACACCACAAGATATGGGCATAAGCGCCTCCAATTGTACACAAAATTA
CTGATTGCAACCCCCAACACAATGATAACCCCCAAACCCCCACAGCATGC
CGGGCACTCAAAGCGCCGCGGCCCCGGCATTCATCGGGTTTGTCGCAGGA
AGCGCGGCAGTCATGACGCTGGTGGCCATCTACGATTTACTTGACCTTGG
TCCCACGTACCGGGACCGGCAGCGGAAGAAGCGCAACTTATGTAGTAGTG
GCGCTGGAGGTGGTGGCAGCGGCAGTGACAGCGAGGGCTGCAGACCAATC
CCCTCATTTTTAACAGCCATGTACCTGTACGAACGAGAGATAGGGCTGGG
AGAGGCTCTTCCATCTACCCCTTTGAATGACGGGTTTCACATGCCGGCCG
AATGGGAGCACCACGCGGGCTGCTGGATTCTCTTCCCTTGGCAGAAGGAC
AATTGGGATCACGATGCCGAGCCTGCACAGAAGGCTTATGCACATGTTGC
CAATGCCATTCAACAGCACGGCAACGAGCAAGTCACGGTTGGGGTGCGTT
CGGAGGATTGGAGCGTAGCAAGGGCGTTGCTAAACCCGGCAGTGAGAGTG
GTGGAGTTGGGGTGTGATGATGCGTGGGTGCGGGATTCAGGGCCGACGTT
CGTGGTAAAGGATGACCAGGAGAAAGAGACGAGAGAGGTCCGAGGAGTTG
ATTGGAATTTTAATGCATATGGTGGGAATTACGAGCCGTGTGAGAGGGAT
CAGTTGGTGGCACGGAAGTTACTGGAGGTTGAGGGGGTGAGGAGGTATCA
TGCGCCGGTCGTTATGGAGGGGGGGTCTTTCCATGTTGATGGGGAGGGCA
CGTGCATAGTAACGGAGGAATGCCTGCTGCATCCATCAAGGAACCCGGGC
TTGAGCAAGGAGGAGATAGAAGAGTATTTGAAGACCTACTTGAACGTGGA
GAGGGTGATTTGGTTGGAGTGGGGTGTCTTCGGCGACCAGGACACGAACG
GGCATGTCGATAACATGTGCTGCTTCAAGGGCCCGGGGGAGGTCATTTTG
CATTGGACAGATGATGAAAACGACCCTCAATTTGAGCGGTCGTGGAGTGC
TTATATCACGCTGACAAAGGAGGTAGACGCGAAGGGGAGGGCGTTGAGGA
TTCACAAAATGCCCTCCCCGGGACCCTTGTTCTATCAAGAGGAGGATATG
GACGGGTTGGTCGTCGGGGAACGAGGAGGTGAAGTAGATAAGGGAGGAAA
GAAGGTGGTGGGTGCTAGAATGGCGGCTTCGTATGTGAACTTTTATCTGG
CGAACGAAGCGGTGGTGGTTCCTCAATTCTTGGACCCGAAAGACGAGGAG
GCGATTGATTTTCTCCAGCTGCTGTACCCGGAGCGCAGAGTTGTGGGGGT
CTACAGTAGAGATATTTTGTTGGGAGGTGGGAATATACATTGTATCACGC
AGCAGCAGCCCGCGAATGTTTTTGATGCGTTTTGAGGAGAGCGAGTTGGG
GTGGAAAGGCGTGAGGGGTGGAGGGTGGGAGGAAGGAAGAAGAGTTTTTC
AATGTATATTTAAATATATAGAGTAAGGAGAAACGAATGAAAGCACAAAG
GTCGACTGAGAGGAAA

protein sequence of NO08G03160.1

>NO08G03160.1-protein ID=NO08G03160.1-protein|Name=NO08G03160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MPGTQSAAAPAFIGFVAGSAAVMTLVAIYDLLDLGPTYRDRQRKKRNLCS
SGAGGGGSGSDSEGCRPIPSFLTAMYLYEREIGLGEALPSTPLNDGFHMP
AEWEHHAGCWILFPWQKDNWDHDAEPAQKAYAHVANAIQQHGNEQVTVGV
RSEDWSVARALLNPAVRVVELGCDDAWVRDSGPTFVVKDDQEKETREVRG
VDWNFNAYGGNYEPCERDQLVARKLLEVEGVRRYHAPVVMEGGSFHVDGE
GTCIVTEECLLHPSRNPGLSKEEIEEYLKTYLNVERVIWLEWGVFGDQDT
NGHVDNMCCFKGPGEVILHWTDDENDPQFERSWSAYITLTKEVDAKGRAL
RIHKMPSPGPLFYQEEDMDGLVVGERGGEVDKGGKKVVGARMAASYVNFY
LANEAVVVPQFLDPKDEEAIDFLQLLYPERRVVGVYSRDILLGGGNIHCI
TQQQPANVFDAF*

Synonyms

Publications