NO08G03160.1, NO08G03160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03160.1
Unique NameNO08G03160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1666
Alignment locationchr8:870279..871944 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:870279..871944 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G03160.1 vs.
Match: EWM26737.1 (agmatine deiminase [Nannochloropsis gaditana])

HSP 1 Score: 603.2 bits (1554), Expect = 6.700e-169
Identity = 296/484 (61.16%), Postives = 354/484 (73.14%), Query Frame = 0 
Query:    6 SAAAPAFIGFVAGSAAVMTLVAIYDLLDLGPTYRDRQRKKRNLCSSGAGGGGSGSDSEGCRPIPSFLTAMYLYEREIGLGEALPSTPLNDGFHMPAEWEHHAGCWILFPWQKDNWDHDAEPAQKAYAHVANAIQQHGNEQVTVGVRSEDWSVARALLNPAVRVVELGCDDAWVRDSGPTFVVKDDQEKETREVRGVDWNFNAYGGNYEPCERDQLVARKLLEVEGVRRYHAPVVMEGGSFHVDGEGTCIVTEECLLHPSRNPGLSKEEIEEYLKTYLNVERVIWLEWGVFGDQDTNGHVDNMCCFKGPGEVILHWTDDENDPQFERSWSAYITLTKEVDAKGRALRIHKMPSPGPLFYQEEDMDGLVVGERG------GEVDKGGK---------------------KVVGARMAASYVNFYLANEAVVVPQFLDPKDEEAIDFLQLLYPERRVVGVYSRDILLGGGNIHCITQQQPANVFDAF 463
            +A+   F+GFV GSA V+  VAI DLLDL P  R   +K+RN      G G +GS  +  RP+PSFL AMYLYER++G GE +PS+P  DGF MPA WE HAGCW+LFP ++D   H+ E  Q  YAH+ANAIQ+HG+EQVTVGVR+EDW  ARALL+P VRVVE+  D AW RDSGPTFVV+DD E+E REVRGVDW     G    PC RDQLVARK+LEVE +RRY AP+VM GG FHVDGEGTC+VTEE LL P++ P L+KE +EE L+ YL VERVIWLE GV+GD+D  G VD++ CFKGPGEVILHWTDDE DPQF+RSWSA+I LT+  DAKGRALRIHKMP PGP+F ++  ++G ++   G       E  +GGK                     + VG RM ASYVNFY+ANEA+VVPQF+DPKDEEAI+ LQ LYPERRV+GV +RD+L GGGNIHC+TQQQP N FDAF
Sbjct:   48 AASMLLFLGFVMGSATVIAAVAIQDLLDLDPILRGWLKKRRN----SKGDGSNGSPLK--RPVPSFLEAMYLYERKVGWGEVIPSSPQEDGFCMPAAWEAHAGCWLLFPCRRDRRAHELEGVQTVYAHIANAIQEHGSEQVTVGVRAEDWEEARALLHPGVRVVEMESDSAWARDSGPTFVVRDDGEEEMREVRGVDWAMGTEG----PCGRDQLVARKVLEVEKIRRYAAPLVMGGGCFHVDGEGTCLVTEESLLSPTQRPSLAKEAVEEVLRRYLGVERVIWLEKGVYGDEDRQGRVDSLACFKGPGEVILHWTDDEMDPQFDRSWSAFIRLTQATDAKGRALRIHKMPMPGPIFDEQGGVEGSLLSGAGCTPAGREEGKEGGKEKGREEGREGTHEEGNARIVGRKVGRRMPASYVNFYIANEAIVVPQFMDPKDEEAIELLQFLYPERRVIGVCTRDLLRGGGNIHCVTQQQPTNQFDAF 521
The following BLAST results are available for this feature:
BLAST of NO08G03160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26737.16.700e-16961.16agmatine deiminase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03160NO08G03160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03160.1NO08G03160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03160.1.cds1NO08G03160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03160.1 ID=NO08G03160.1|Name=NO08G03160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1666bp
CCAATTGTACACAAAATTACTGACTCTGTGCTCAGCCATGACTTCACATC
TTCACACCACAAGATATGGGCATAAGCGCCTCCAATTGTACACAAAATTA
CTGATTGCAACCCCCAACACAATGATAACCCCCAAACCCCCACAGCATGC
CGGGCACTCAAAGCGCCGCGGCCCCGGCATTCATCGGGTTTGTCGCAGGA
AGCGCGGCAGTCATGACGCTGGTGGCCATCTACGATTTACTTGACCTTGG
TCCCACGTACCGGGACCGGCAGCGGAAGAAGCGCAACTTATGTAGTAGTG
GCGCTGGAGGTGGTGGCAGCGGCAGTGACAGCGAGGGCTGCAGACCAATC
CCCTCATTTTTAACAGCCATGTACCTGTACGAACGAGAGATAGGGCTGGG
AGAGGCTCTTCCATCTACCCCTTTGAATGACGGGTTTCACATGCCGGCCG
AATGGGAGCACCACGCGGGCTGCTGGATTCTCTTCCCTTGGCAGAAGGAC
AATTGGGATCACGATGCCGAGCCTGCACAGAAGGCTTATGCACATGTTGC
CAATGCCATTCAACAGCACGGCAACGAGCAAGTCACGGTTGGGGTGCGTT
CGGAGGATTGGAGCGTAGCAAGGGCGTTGCTAAACCCGGCAGTGAGAGTG
GTGGAGTTGGGGTGTGATGATGCGTGGGTGCGGGATTCAGGGCCGACGTT
CGTGGTAAAGGATGACCAGGAGAAAGAGACGAGAGAGGTCCGAGGAGTTG
ATTGGAATTTTAATGCATATGGTGGGAATTACGAGCCGTGTGAGAGGGAT
CAGTTGGTGGCACGGAAGTTACTGGAGGTTGAGGGGGTGAGGAGGTATCA
TGCGCCGGTCGTTATGGAGGGGGGGTCTTTCCATGTTGATGGGGAGGGCA
CGTGCATAGTAACGGAGGAATGCCTGCTGCATCCATCAAGGAACCCGGGC
TTGAGCAAGGAGGAGATAGAAGAGTATTTGAAGACCTACTTGAACGTGGA
GAGGGTGATTTGGTTGGAGTGGGGTGTCTTCGGCGACCAGGACACGAACG
GGCATGTCGATAACATGTGCTGCTTCAAGGGCCCGGGGGAGGTCATTTTG
CATTGGACAGATGATGAAAACGACCCTCAATTTGAGCGGTCGTGGAGTGC
TTATATCACGCTGACAAAGGAGGTAGACGCGAAGGGGAGGGCGTTGAGGA
TTCACAAAATGCCCTCCCCGGGACCCTTGTTCTATCAAGAGGAGGATATG
GACGGGTTGGTCGTCGGGGAACGAGGAGGTGAAGTAGATAAGGGAGGAAA
GAAGGTGGTGGGTGCTAGAATGGCGGCTTCGTATGTGAACTTTTATCTGG
CGAACGAAGCGGTGGTGGTTCCTCAATTCTTGGACCCGAAAGACGAGGAG
GCGATTGATTTTCTCCAGCTGCTGTACCCGGAGCGCAGAGTTGTGGGGGT
CTACAGTAGAGATATTTTGTTGGGAGGTGGGAATATACATTGTATCACGC
AGCAGCAGCCCGCGAATGTTTTTGATGCGTTTTGAGGAGAGCGAGTTGGG
GTGGAAAGGCGTGAGGGGTGGAGGGTGGGAGGAAGGAAGAAGAGTTTTTC
AATGTATATTTAAATATATAGAGTAAGGAGAAACGAATGAAAGCACAAAG
GTCGACTGAGAGGAAA
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protein sequence of NO08G03160.1

>NO08G03160.1-protein ID=NO08G03160.1-protein|Name=NO08G03160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MPGTQSAAAPAFIGFVAGSAAVMTLVAIYDLLDLGPTYRDRQRKKRNLCS
SGAGGGGSGSDSEGCRPIPSFLTAMYLYEREIGLGEALPSTPLNDGFHMP
AEWEHHAGCWILFPWQKDNWDHDAEPAQKAYAHVANAIQQHGNEQVTVGV
RSEDWSVARALLNPAVRVVELGCDDAWVRDSGPTFVVKDDQEKETREVRG
VDWNFNAYGGNYEPCERDQLVARKLLEVEGVRRYHAPVVMEGGSFHVDGE
GTCIVTEECLLHPSRNPGLSKEEIEEYLKTYLNVERVIWLEWGVFGDQDT
NGHVDNMCCFKGPGEVILHWTDDENDPQFERSWSAYITLTKEVDAKGRAL
RIHKMPSPGPLFYQEEDMDGLVVGERGGEVDKGGKKVVGARMAASYVNFY
LANEAVVVPQFLDPKDEEAIDFLQLLYPERRVVGVYSRDILLGGGNIHCI
TQQQPANVFDAF*
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mRNA from alignment at chr8:870279..871944-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03160.1 ID=NO08G03160.1|Name=NO08G03160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1666bp|location=Sequence derived from alignment at chr8:870279..871944- (Nannochloropsis oceanica)
CCAATTGTACACAAAATTACTGACTCTGTGCTCAGCCATGACTTCACATC
TTCACACCACAAGATATGGGCATAAGCGCCTCCAATTGTACACAAAATTA
CTGATTGCAACCCCCAACACAATGATAACCCCCAAACCCCCACAGCATGC
CGGGCACTCAAAGCGCCGCGGCCCCGGCATTCATCGGGTTTGTCGCAGGA
AGCGCGGCAGTCATGACGCTGGTGGCCATCTACGATTTACTTGACCTTGG
TCCCACGTACCGGGACCGGCAGCGGAAGAAGCGCAACTTATGTAGTAGTG
GCGCTGGAGGTGGTGGCAGCGGCAGTGACAGCGAGGGCTGCAGACCAATC
CCCTCATTTTTAACAGCCATGTACCTGTACGAACGAGAGATAGGGCTGGG
AGAGGCTCTTCCATCTACCCCTTTGAATGACGGGTTTCACATGCCGGCCG
AATGGGAGCACCACGCGGGCTGCTGGATTCTCTTCCCTTGGCAGAAGGAC
AATTGGGATCACGATGCCGAGCCTGCACAGAAGGCTTATGCACATGTTGC
CAATGCCATTCAACAGCACGGCAACGAGCAAGTCACGGTTGGGGTGCGTT
CGGAGGATTGGAGCGTAGCAAGGGCGTTGCTAAACCCGGCAGTGAGAGTG
GTGGAGTTGGGGTGTGATGATGCGTGGGTGCGGGATTCAGGGCCGACGTT
CGTGGTAAAGGATGACCAGGAGAAAGAGACGAGAGAGGTCCGAGGAGTTG
ATTGGAATTTTAATGCATATGGTGGGAATTACGAGCCGTGTGAGAGGGAT
CAGTTGGTGGCACGGAAGTTACTGGAGGTTGAGGGGGTGAGGAGGTATCA
TGCGCCGGTCGTTATGGAGGGGGGGTCTTTCCATGTTGATGGGGAGGGCA
CGTGCATAGTAACGGAGGAATGCCTGCTGCATCCATCAAGGAACCCGGGC
TTGAGCAAGGAGGAGATAGAAGAGTATTTGAAGACCTACTTGAACGTGGA
GAGGGTGATTTGGTTGGAGTGGGGTGTCTTCGGCGACCAGGACACGAACG
GGCATGTCGATAACATGTGCTGCTTCAAGGGCCCGGGGGAGGTCATTTTG
CATTGGACAGATGATGAAAACGACCCTCAATTTGAGCGGTCGTGGAGTGC
TTATATCACGCTGACAAAGGAGGTAGACGCGAAGGGGAGGGCGTTGAGGA
TTCACAAAATGCCCTCCCCGGGACCCTTGTTCTATCAAGAGGAGGATATG
GACGGGTTGGTCGTCGGGGAACGAGGAGGTGAAGTAGATAAGGGAGGAAA
GAAGGTGGTGGGTGCTAGAATGGCGGCTTCGTATGTGAACTTTTATCTGG
CGAACGAAGCGGTGGTGGTTCCTCAATTCTTGGACCCGAAAGACGAGGAG
GCGATTGATTTTCTCCAGCTGCTGTACCCGGAGCGCAGAGTTGTGGGGGT
CTACAGTAGAGATATTTTGTTGGGAGGTGGGAATATACATTGTATCACGC
AGCAGCAGCCCGCGAATGTTTTTGATGCGTTTTGAGGAGAGCGAGTTGGG
GTGGAAAGGCGTGAGGGGTGGAGGGTGGGAGGAAGGAAGAAGAGTTTTTC
AATGTATATTTAAATATATAGAGTAAGGAGAAACGAATGAAAGCACAAAG
GTCGACTGAGAGGAAA
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Coding sequence (CDS) from alignment at chr8:870279..871944-

>NO08G03160.1 ID=NO08G03160.1|Name=NO08G03160.1|organism=Nannochloropsis oceanica|type=CDS|length=1389bp|location=Sequence derived from alignment at chr8:870279..871944- (Nannochloropsis oceanica)
ATGCCGGGCACTCAAAGCGCCGCGGCCCCGGCATTCATCGGGTTTGTCGC
AGGAAGCGCGGCAGTCATGACGCTGGTGGCCATCTACGATTTACTTGACC
TTGGTCCCACGTACCGGGACCGGCAGCGGAAGAAGCGCAACTTATGTAGT
AGTGGCGCTGGAGGTGGTGGCAGCGGCAGTGACAGCGAGGGCTGCAGACC
AATCCCCTCATTTTTAACAGCCATGTACCTGTACGAACGAGAGATAGGGC
TGGGAGAGGCTCTTCCATCTACCCCTTTGAATGACGGGTTTCACATGCCG
GCCGAATGGGAGCACCACGCGGGCTGCTGGATTCTCTTCCCTTGGCAGAA
GGACAATTGGGATCACGATGCCGAGCCTGCACAGAAGGCTTATGCACATG
TTGCCAATGCCATTCAACAGCACGGCAACGAGCAAGTCACGGTTGGGGTG
CGTTCGGAGGATTGGAGCGTAGCAAGGGCGTTGCTAAACCCGGCAGTGAG
AGTGGTGGAGTTGGGGTGTGATGATGCGTGGGTGCGGGATTCAGGGCCGA
CGTTCGTGGTAAAGGATGACCAGGAGAAAGAGACGAGAGAGGTCCGAGGA
GTTGATTGGAATTTTAATGCATATGGTGGGAATTACGAGCCGTGTGAGAG
GGATCAGTTGGTGGCACGGAAGTTACTGGAGGTTGAGGGGGTGAGGAGGT
ATCATGCGCCGGTCGTTATGGAGGGGGGGTCTTTCCATGTTGATGGGGAG
GGCACGTGCATAGTAACGGAGGAATGCCTGCTGCATCCATCAAGGAACCC
GGGCTTGAGCAAGGAGGAGATAGAAGAGTATTTGAAGACCTACTTGAACG
TGGAGAGGGTGATTTGGTTGGAGTGGGGTGTCTTCGGCGACCAGGACACG
AACGGGCATGTCGATAACATGTGCTGCTTCAAGGGCCCGGGGGAGGTCAT
TTTGCATTGGACAGATGATGAAAACGACCCTCAATTTGAGCGGTCGTGGA
GTGCTTATATCACGCTGACAAAGGAGGTAGACGCGAAGGGGAGGGCGTTG
AGGATTCACAAAATGCCCTCCCCGGGACCCTTGTTCTATCAAGAGGAGGA
TATGGACGGGTTGGTCGTCGGGGAACGAGGAGGTGAAGTAGATAAGGGAG
GAAAGAAGGTGGTGGGTGCTAGAATGGCGGCTTCGTATGTGAACTTTTAT
CTGGCGAACGAAGCGGTGGTGGTTCCTCAATTCTTGGACCCGAAAGACGA
GGAGGCGATTGATTTTCTCCAGCTGCTGTACCCGGAGCGCAGAGTTGTGG
GGGTCTACAGTAGAGATATTTTGTTGGGAGGTGGGAATATACATTGTATC
ACGCAGCAGCAGCCCGCGAATGTTTTTGATGCGTTTTGA
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Synonyms
Publications