NO08G03130, NO08G03130 (gene) Nannochloropsis oceanica

Overview
NameNO08G03130
Unique NameNO08G03130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length631
Alignment locationchr8:863504..864134 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:863504..864134 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO08G03130 vs. NCBI_GenBank
Match: EWM26581.1 (hypothetical protein Naga_100001g219 [Nannochloropsis gaditana])

HSP 1 Score: 115.9 bits (289), Expect = 1.100e-22
Identity = 75/142 (52.82%), Postives = 94/142 (66.20%), Query Frame = 0 
Query:    1 MGNTTSGKMVKEIVCDAKAILQARNKVSLEQIVARREDVQRQLLEVSKHKEELLKRRAAGVRAIVKEYEAKRADMLNNFASRQLQHQQQQQPSPFD------TPSDSTAP---------TAGCNESGPIILPSPDEVFMRIR 128
            MGNTTSGKM+KE+V DA+A+L+A  K + EQ+ ARR+DVQRQL EVSKHKE+LL+RRAAGVRAIVKEY AKR  ML +FAS      + QQP  F       T +DS+A              + S   +LPSP+EVF + +
Sbjct:   42 MGNTTSGKMLKEVVADARAVLKATGKNTFEQVKARRQDVQRQLDEVSKHKEDLLQRRAAGVRAIVKEYAAKREIMLEHFAS-----DKTQQPPAFGAGSAPLTDTDSSAKDSQKKKMFRATESSSSTHRLLPSPEEVFRQAK 178
The following BLAST results are available for this feature:
BLAST of NO08G03130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26581.11.100e-2252.82hypothetical protein Naga_100001g219 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008719NSK008719Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03130.1NO08G03130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100001g219gene3760Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03130.1NO08G03130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03130 ID=NO08G03130|Name=NO08G03130|organism=Nannochloropsis oceanica|type=gene|length=631bp
ACAAAGACCACAGGAGTACGCCAACAACTACCATCAAAATCGCGATGGGC
AACACCACGTCGGGCAAGATGGTCAAGGAGATCGTGTGTGATGCAAAGGC
AATTTTGCAGGCCCGTAACAAGGTCTCCCTCGAGCAAATAGTCGCCCGGC
GGGAAGACGTTCAGCGGCAGCTTTTGGAAGTGAGCAAGCACAAGGAGGAG
TTACTGAAGCGACGGGCTGCAGGGGTGCGAGCCATCGTGAAGGAGTATGA
AGCCAAGCGTGCAGACATGCTCAATAATTTCGCTTCCCGGCAGCTGCAGC
ATCAACAGCAGCAGCAGCCTTCCCCCTTCGACACTCCATCTGACAGCACT
GCTCCGACCGCGGGCTGCAATGAAAGTGGACCGATAATACTGCCATCTCC
GGACGAAGTTTTCATGAGGATACGATCTCTTCCAAAAAGAGCCAGCGACG
GCGGTTCGTCGTCCTCCTCCTCCTCTTCTTCTTCGTCAGATTCCTGAGAG
ACAAGGAATGCGGTGATGAATTTTGTACATACGTACTGTCCTTAAATTTC
ATAGAACTACAAGCTGCTGTGGAAAATAAGGGAGGAGTGGCTCGACCAAC
ATGAAGGAGACTGTGAAAAATGGAATTTGAT
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protein sequence of NO08G03130.1

>NO08G03130.1-protein ID=NO08G03130.1-protein|Name=NO08G03130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MGNTTSGKMVKEIVCDAKAILQARNKVSLEQIVARREDVQRQLLEVSKHK
EELLKRRAAGVRAIVKEYEAKRADMLNNFASRQLQHQQQQQPSPFDTPSD
STAPTAGCNESGPIILPSPDEVFMRIRSLPKRASDGGSSSSSSSSSSSDS
*
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Synonyms
Publications