NO08G03130.1, NO08G03130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03130.1
Unique NameNO08G03130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length631
Alignment locationchr8:863504..864134 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:863504..864134 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO08G03130.1 vs.
Match: EWM26581.1 (hypothetical protein Naga_100001g219 [Nannochloropsis gaditana])

HSP 1 Score: 109.4 bits (272), Expect = 1.000e-20
Identity = 82/165 (49.70%), Postives = 102/165 (61.82%), Query Frame = 0
Query:    1 MGNTTSGKMVKEIVCDAKAILQARNKVSLEQIVARREDVQRQLLEVSKHKEELLKRRAAGVRAIVKEYEAKRADMLNNFASRQLQHQQQQQPSPFD------TPSDSTAP---------TAGCNESGPIILPSPDEVFMRIRSLPKRASDGGSSSSSSSSSSSDS 151
            MGNTTSGKM+KE+V DA+A+L+A  K + EQ+ ARR+DVQRQL EVSKHKE+LL+RRAAGVRAIVKEY AKR  ML +FAS      + QQP  F       T +DS+A              + S   +LPSP+EVF       ++A D   S  S  SS+  S
Sbjct:   42 MGNTTSGKMLKEVVADARAVLKATGKNTFEQVKARRQDVQRQLDEVSKHKEDLLQRRAAGVRAIVKEYAAKREIMLEHFAS-----DKTQQPPAFGAGSAPLTDTDSSAKDSQKKKMFRATESSSSTHRLLPSPEEVF-------RQAKDFDESRGSKISSTDPS 194          
The following BLAST results are available for this feature:
BLAST of NO08G03130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26581.11.000e-2049.70hypothetical protein Naga_100001g219 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03130NO08G03130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03130.1NO08G03130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03130.1.cds1NO08G03130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03130.1 ID=NO08G03130.1|Name=NO08G03130.1|organism=Nannochloropsis oceanica|type=mRNA|length=631bp
ACAAAGACCACAGGAGTACGCCAACAACTACCATCAAAATCGCGATGGGC
AACACCACGTCGGGCAAGATGGTCAAGGAGATCGTGTGTGATGCAAAGGC
AATTTTGCAGGCCCGTAACAAGGTCTCCCTCGAGCAAATAGTCGCCCGGC
GGGAAGACGTTCAGCGGCAGCTTTTGGAAGTGAGCAAGCACAAGGAGGAG
TTACTGAAGCGACGGGCTGCAGGGGTGCGAGCCATCGTGAAGGAGTATGA
AGCCAAGCGTGCAGACATGCTCAATAATTTCGCTTCCCGGCAGCTGCAGC
ATCAACAGCAGCAGCAGCCTTCCCCCTTCGACACTCCATCTGACAGCACT
GCTCCGACCGCGGGCTGCAATGAAAGTGGACCGATAATACTGCCATCTCC
GGACGAAGTTTTCATGAGGATACGATCTCTTCCAAAAAGAGCCAGCGACG
GCGGTTCGTCGTCCTCCTCCTCCTCTTCTTCTTCGTCAGATTCCTGAGAG
ACAAGGAATGCGGTGATGAATTTTGTACATACGTACTGTCCTTAAATTTC
ATAGAACTACAAGCTGCTGTGGAAAATAAGGGAGGAGTGGCTCGACCAAC
ATGAAGGAGACTGTGAAAAATGGAATTTGAT
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protein sequence of NO08G03130.1

>NO08G03130.1-protein ID=NO08G03130.1-protein|Name=NO08G03130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MGNTTSGKMVKEIVCDAKAILQARNKVSLEQIVARREDVQRQLLEVSKHK
EELLKRRAAGVRAIVKEYEAKRADMLNNFASRQLQHQQQQQPSPFDTPSD
STAPTAGCNESGPIILPSPDEVFMRIRSLPKRASDGGSSSSSSSSSSSDS
*
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mRNA from alignment at chr8:863504..864134-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03130.1 ID=NO08G03130.1|Name=NO08G03130.1|organism=Nannochloropsis oceanica|type=mRNA|length=631bp|location=Sequence derived from alignment at chr8:863504..864134- (Nannochloropsis oceanica)
ACAAAGACCACAGGAGTACGCCAACAACTACCATCAAAATCGCGATGGGC AACACCACGTCGGGCAAGATGGTCAAGGAGATCGTGTGTGATGCAAAGGC AATTTTGCAGGCCCGTAACAAGGTCTCCCTCGAGCAAATAGTCGCCCGGC GGGAAGACGTTCAGCGGCAGCTTTTGGAAGTGAGCAAGCACAAGGAGGAG TTACTGAAGCGACGGGCTGCAGGGGTGCGAGCCATCGTGAAGGAGTATGA AGCCAAGCGTGCAGACATGCTCAATAATTTCGCTTCCCGGCAGCTGCAGC ATCAACAGCAGCAGCAGCCTTCCCCCTTCGACACTCCATCTGACAGCACT GCTCCGACCGCGGGCTGCAATGAAAGTGGACCGATAATACTGCCATCTCC GGACGAAGTTTTCATGAGGATACGATCTCTTCCAAAAAGAGCCAGCGACG GCGGTTCGTCGTCCTCCTCCTCCTCTTCTTCTTCGTCAGATTCCTGAGAG ACAAGGAATGCGGTGATGAATTTTGTACATACGTACTGTCCTTAAATTTC ATAGAACTACAAGCTGCTGTGGAAAATAAGGGAGGAGTGGCTCGACCAAC ATGAAGGAGACTGTGAAAAATGGAATTTGAT
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Coding sequence (CDS) from alignment at chr8:863504..864134-

>NO08G03130.1 ID=NO08G03130.1|Name=NO08G03130.1|organism=Nannochloropsis oceanica|type=CDS|length=453bp|location=Sequence derived from alignment at chr8:863504..864134- (Nannochloropsis oceanica)
ATGGGCAACACCACGTCGGGCAAGATGGTCAAGGAGATCGTGTGTGATGC
AAAGGCAATTTTGCAGGCCCGTAACAAGGTCTCCCTCGAGCAAATAGTCG
CCCGGCGGGAAGACGTTCAGCGGCAGCTTTTGGAAGTGAGCAAGCACAAG
GAGGAGTTACTGAAGCGACGGGCTGCAGGGGTGCGAGCCATCGTGAAGGA
GTATGAAGCCAAGCGTGCAGACATGCTCAATAATTTCGCTTCCCGGCAGC
TGCAGCATCAACAGCAGCAGCAGCCTTCCCCCTTCGACACTCCATCTGAC
AGCACTGCTCCGACCGCGGGCTGCAATGAAAGTGGACCGATAATACTGCC
ATCTCCGGACGAAGTTTTCATGAGGATACGATCTCTTCCAAAAAGAGCCA
GCGACGGCGGTTCGTCGTCCTCCTCCTCCTCTTCTTCTTCGTCAGATTCC
TGA
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Synonyms
Publications