NO08G02890, NO08G02890 (gene) Nannochloropsis oceanica

Overview
NameNO08G02890
Unique NameNO08G02890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1082
Alignment locationchr8:811225..812306 +

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin repeat-containing protein P1E11.10
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:811225..812306 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
[Close]
BLAST of NO08G02890 vs. NCBI_GenBank
Match: XP_005852515.1 (putative ankyrin repeat protein [Nannochloropsis gaditana CCMP526] >EKU23318.1 putative ankyrin repeat protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 212.2 bits (539), Expect = 1.400e-51
Identity = 92/126 (73.02%), Postives = 114/126 (90.48%), Query Frame = 0 
Query:    1 MVVASLDRNIWICASDGDLAGVQEFLEEGGMDVNAADEFGYTCLHAAASYGHVGLVQFLIGRGGNVALRDPDGDTPLHVCEEVDVAQVLVENGADPQSQNMEGKRPHDIALEDGHLPLGNYLRGLC 127
            MV A+LDRNIWICASDGDL+GV+EFL++GG+DVN+ADEFGYTCLHAA+SYGHV L+QFL+GRGG+V +RDPDGDTPLHVCE+V  A+ LV +GADPQ++N +GKRPHD+ALE+GH+ +  YLR LC
Sbjct:    1 MVAATLDRNIWICASDGDLSGVKEFLDDGGLDVNSADEFGYTCLHAASSYGHVELIQFLVGRGGDVDMRDPDGDTPLHVCEDVAAAEALVTHGADPQARNNQGKRPHDVALEEGHVAVAGYLRPLC 126
[Close]
BLAST of NO08G02890 vs. NCBI_GenBank
Match: EWM26677.1 (hypothetical protein Naga_100001g196 [Nannochloropsis gaditana])

HSP 1 Score: 211.8 bits (538), Expect = 1.900e-51
Identity = 92/126 (73.02%), Postives = 114/126 (90.48%), Query Frame = 0 
Query:    1 MVVASLDRNIWICASDGDLAGVQEFLEEGGMDVNAADEFGYTCLHAAASYGHVGLVQFLIGRGGNVALRDPDGDTPLHVCEEVDVAQVLVENGADPQSQNMEGKRPHDIALEDGHLPLGNYLRGLC 127
            MV A+LDRNIWICASDGDL+GV+EFL++GG+DVN+ADEFGYTCLHAA+SYGHV L+QFL+GRGG+V +RDPDGDTPLHVCE+V  A+ LV +GADPQ++N +GKRPHD+ALE+GH+ +  YLR LC
Sbjct:    1 MVAATLDRNIWICASDGDLSGVKEFLDDGGLDVNSADEFGYTCLHAASSYGHVELIQFLVGRGGDVDVRDPDGDTPLHVCEDVAAAEALVTHGADPQARNNQGKRPHDVALEEGHVAVAGYLRPLC 126
[Close]
BLAST of NO08G02890 vs. NCBI_GenBank
Match: OAQ30714.1 (ankyrin [Mortierella elongata AG-77])

HSP 1 Score: 127.1 bits (318), Expect = 6.000e-26
Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = 0 
Query:    6 LDRNIWICASDGDLAGVQEFLEEGGMDVNAADEFGYTCLHAAASYGHVGLVQFLIGRGGNVALRDPDGDTPLHVCEEVDVAQVLVENGADPQSQNMEGKRPHDIALEDGHLPLGNYLRGL 126
            +  NIW+ ASDGDLA V+ F+ E G+ +NA DEFGY+ LHAAASYGH  L+ +L+  G +V ++DP+GD+PL VCE VD+A++LV+ GAD +  N       + A E+  L + +YLR L
Sbjct:    1 MSHNIWLAASDGDLAAVKAFINEKGVSINAQDEFGYSALHAAASYGHKELITYLLENGADVNIQDPEGDSPLFVCETVDIAEMLVKAGADAKHINENEMTAAENAEEEEWLEVAHYLREL 120
[Close]
BLAST of NO08G02890 vs. NCBI_GenBank
Match: OCF36566.1 (ankyrin repeat-containing protein [Kwoniella heveanensis BCC8398])

HSP 1 Score: 119.8 bits (299), Expect = 9.600e-24
Identity = 60/122 (49.18%), Postives = 80/122 (65.57%), Query Frame = 0 
Query:    4 ASLDRNIWICASDGDLAGVQEFLEEGGMDVNAADEFGYTCLHAAASYGHVGLVQFLIGRGGNVALRDPDGDTPLHVCEEVDVAQVLVENGADPQSQNMEGKRPHDIALEDGHLPLGNYLRGL 126
            +S  +N+W+ +SDGDL  VQ  +E  GM  N  D   YT +HAA+SY H  L+++L+ +GG+  ++D DGDTPL+V E V+VA+ LVE GADP S N EG    D ALED H  +  YLR L
Sbjct:    5 SSSGKNLWVASSDGDLERVQFLIETEGMTPNDKDANSYTPMHAASSYAHFDLLEYLLSKGGDPNIQDDDGDTPLYVVESVEVARWLVEQGADPASVNEEGLTAAD-ALEDDHPEIAQYLRSL 125
[Close]
BLAST of NO08G02890 vs. NCBI_GenBank
Match: OWZ02350.1 (hypothetical protein PHMEG_00026099 [Phytophthora megakarya])

HSP 1 Score: 119.8 bits (299), Expect = 9.600e-24
Identity = 58/107 (54.21%), Postives = 73/107 (68.22%), Query Frame = 0 
Query:    9 NIWICASDGDLAGVQEFLEEGGMDVNAADEFGYTCLHAAASYGHVGLVQFLIGRGGNVALRDPDGDTPLHVCEEVDVAQVLVENGADPQSQNMEGKRPHDIALEDGH 116
            N+W  A DGDL  V+ FL  GG DVN  DE GYT L AA SY H+ LV FL+  G +V L D D DTPLH CE V+ A++L+E GAD  ++N EG+ P+D+A+ED H
Sbjct:    4 NVWTAAGDGDLESVKAFLVGGG-DVNTKDENGYTPLQAAVSYNHMDLVVFLLASGADVKLGDDDMDTPLHRCESVECAKLLLERGADLNARNSEGQTPYDVAIEDDH 109
[Close]
BLAST of NO08G02890 vs. NCBI_GenBank
Match: OWZ05549.1 (hypothetical protein PHMEG_00022343 [Phytophthora megakarya])

HSP 1 Score: 119.8 bits (299), Expect = 9.600e-24
Identity = 58/107 (54.21%), Postives = 73/107 (68.22%), Query Frame = 0 
Query:    9 NIWICASDGDLAGVQEFLEEGGMDVNAADEFGYTCLHAAASYGHVGLVQFLIGRGGNVALRDPDGDTPLHVCEEVDVAQVLVENGADPQSQNMEGKRPHDIALEDGH 116
            N+W  A DGDL  V+ FL  GG DVN  DE GYT L AA SY H+ LV FL+  G +V L D D DTPLH CE V+ A++L+E GAD  ++N EG+ P+D+A+ED H
Sbjct:    4 NVWTAAGDGDLESVKAFLVGGG-DVNTKDENGYTPLQAAVSYSHMDLVVFLLASGADVKLGDDDMDTPLHRCESVECAKLLLERGADLNARNSEGQTPYDVAIEDDH 109
[Close]
BLAST of NO08G02890 vs. NCBI_GenBank
Match: KZV62912.1 (ankyrin [Peniophora sp. CONT])

HSP 1 Score: 118.2 bits (295), Expect = 2.800e-23
Identity = 59/123 (47.97%), Postives = 81/123 (65.85%), Query Frame = 0 
Query:    3 VASLDRNIWICASDGDLAGVQEFLEEGGMDVNAADEFGYTCLHAAASYGHVGLVQFLIGRGGNVALRDPDGDTPLHVCEEVDVAQVLVENGADPQSQNMEGKRPHDIALEDGHLPLGNYLRGL 126
            +AS  +NIW+ ASDGDLA VQ  +E  GM  N  D + YT +HAAASYGH+ ++++L+  GG+V + D DGDTPL+  E V+ A  LV++GA  + QN EG  P D  LE+    + +YLR L
Sbjct:    1 MASALKNIWVAASDGDLARVQHLIEVEGMSPNVPDAYTYTPMHAAASYGHLEVLEYLVSHGGDVNVTDDDGDTPLYTVENVETATWLVQHGAVVERQNSEGVSPAD-HLEEDFPDISSYLRSL 122
[Close]
BLAST of NO08G02890 vs. NCBI_GenBank
Match: OCF45446.1 (ankyrin repeat-containing protein [Kwoniella heveanensis CBS 569])

HSP 1 Score: 118.2 bits (295), Expect = 2.800e-23
Identity = 59/120 (49.17%), Postives = 79/120 (65.83%), Query Frame = 0 
Query:    4 ASLDRNIWICASDGDLAGVQEFLEEGGMDVNAADEFGYTCLHAAASYGHVGLVQFLIGRGGNVALRDPDGDTPLHVCEEVDVAQVLVENGADPQSQNMEGKRPHDIALEDGHLPLGNYLR 124
            +S  +N+W+ +SDGDL  VQ  +E  GM  N  D   YT +HAA+SY H  L+++L+ +GG+  ++D DGDTPL+V E V+VA+ LVE GADP S N EG    D ALED H  +  YLR
Sbjct:    5 SSSGKNLWVASSDGDLERVQFLIETEGMTPNDKDANSYTPMHAASSYAHFDLLEYLLSKGGDPNIQDDDGDTPLYVVESVEVARWLVEQGADPASVNEEGLTAAD-ALEDDHPEIAQYLR 123
[Close]
BLAST of NO08G02890 vs. NCBI_GenBank
Match: KDR76328.1 (hypothetical protein GALMADRAFT_247717 [Galerina marginata CBS 339.88])

HSP 1 Score: 117.5 bits (293), Expect = 4.800e-23
Identity = 56/121 (46.28%), Postives = 79/121 (65.29%), Query Frame = 0 
Query:    3 VASLDRNIWICASDGDLAGVQEFLEEGGMDVNAADEFGYTCLHAAASYGHVGLVQFLIGRGGNVALRDPDGDTPLHVCEEVDVAQVLVENGADPQSQNMEGKRPHDIALEDGHLPLGNYLR 124
            +A   +NIW+ A DGDL  V+E +E   +  N  D+F YT +HAAASYGH+ ++++L+ RGGNV + D DGDTPL+  E ++ A+ LVE+GA    QN+EG  P D  L D    + +YLR
Sbjct:    1 MARAPKNIWVAAGDGDLDRVRELIEHHSLSPNLPDDFTYTPIHAAASYGHIHVLEYLLSRGGNVNITDSDGDTPLYTVENIETARYLVEHGAVVARQNLEGVSPID-HLTDDFPQIADYLR 120
[Close]
BLAST of NO08G02890 vs. NCBI_GenBank
Match: XP_014157227.1 (hypothetical protein SARC_04421 [Sphaeroforma arctica JP610] >KNC83325.1 hypothetical protein SARC_04421 [Sphaeroforma arctica JP610])

HSP 1 Score: 115.2 bits (287), Expect = 2.400e-22
Identity = 54/121 (44.63%), Postives = 82/121 (67.77%), Query Frame = 0 
Query:    5 SLDRNIWICASDGDLAGVQEFLEEGGMDV--NAADEFGYTCLHAAASYGHVGLVQFLIGRGGNVALRDPDGDTPLHVCEEVDVAQVLVENGADPQSQNMEGKRPHDIALEDGHLPLGNYLR 124
            S D N+W+ ASD ++  V+E +E+   D+  N+ D  GYT +HAAA +GH  L+++LI +GG+  + D DGD+PLH  E+V +AQ+LV+ GAD   +N EG  P+D+A E+G L + N+ R
Sbjct:   39 SSDSNLWVAASDNNIGRVKELIEDASSDLSPNSKDGNGYTPMHAAAGWGHKELLEYLISKGGDANVTDNDGDSPLHSTEDVIIAQILVDAGADLAIKNDEGLTPNDVASEEGLLEMCNFFR 159
The following BLAST results are available for this feature:
BLAST of NO08G02890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005852515.11.400e-5173.02putative ankyrin repeat protein [Nannochloropsis g... [more]
EWM26677.11.900e-5173.02hypothetical protein Naga_100001g196 [Nannochlorop... [more]
OAQ30714.16.000e-2649.17ankyrin [Mortierella elongata AG-77][more]
OCF36566.19.600e-2449.18ankyrin repeat-containing protein [Kwoniella hevea... [more]
OWZ02350.19.600e-2454.21hypothetical protein PHMEG_00026099 [Phytophthora ... [more]
OWZ05549.19.600e-2454.21hypothetical protein PHMEG_00022343 [Phytophthora ... [more]
KZV62912.12.800e-2347.97ankyrin [Peniophora sp. CONT][more]
OCF45446.12.800e-2349.17ankyrin repeat-containing protein [Kwoniella hevea... [more]
KDR76328.14.800e-2346.28hypothetical protein GALMADRAFT_247717 [Galerina m... [more]
XP_014157227.12.400e-2244.63hypothetical protein SARC_04421 [Sphaeroforma arct... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL108nonsL108Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR140ngnoR140Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008741NSK008741Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02890.1NO08G02890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582803gene_3621Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g196gene3780Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02890.1NO08G02890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02890 ID=NO08G02890|Name=NO08G02890|organism=Nannochloropsis oceanica|type=gene|length=1082bp
ACCCACCAATCCCTCGATTATCCGCACCAAAACTCTCAGACAGGAGCGAT
GGTAGTGGCCTCGCTCGACCGCAACATTTGGATCTGCGCTTCTGgtaagt
tgaattgtaattattatcttgtcatggtctcatccaccaccagtccctcg
tcccaccacctcctagacctccccactcaccccgccctccctaaacgcca
atcctcccaaatcccaccagACGGAGATCTGGCCGGCGTCCAAGAATTCC
TAGAGGAAGGTGGCATGGATGTGAATGCGGCGGATGAATTTGGATACACG
TGCTTGCATGCCGCGGCGTCGTACGGGCATGTGGGCTTGGTTCAGTTCCT
TATTGGGCGAGGTGGGAACGTTGCCTTGCGTGACCCGGACGGGGACACGC
CCTTGCATGTGTGCGAGGAAGTAGACGTGGCCCAGGTTCTGGTTGAAAAT
GGTGCAGATCCACAATCTCAGAACATGGAGGGGAAGCGGCCACATGACAT
TGCGTTGGAAGATGGGCATTTGCCGTTGGGAAATTACTTGCGGGGGTTGT
GTGGCTTGCCGCCCTTGACGGCAGCCCAGGCGCAGGCAGCCATGGCGGCG
CTGGAGTCGCAGGATAATGGAGAGCAAGGGGAGGATCAGGAGGTGCATCA
GATGGGATTACAAGATCTGCAGGCTTTTGTGGAAGGGCAGGAAGAGGAGC
AGGAGGAGGATGATGTGGAGAGGGGGAAGGAGAGTGGGATGGAGGAGAAT
AAAATGGCAGAGTGAGAGGGAAGGACTCGAGAAATAAATAGCGGGAGAGA
GAGAGAGGGGGGGGGGGATAGAGAGAGAGAGAGACTATATGATCTTGGGG
TTCAAAAATAAGGAAAAGTGTTTAATGGTACGCTCGTGATAGAAAGCACG
TGATAGACTGACTAAGGTATCGATGAGAGATTTAGCCCCGAAGGGAGCGG
ATCAGTCAAACCTGAGTGCCTCAGAGATCACAGATTAAAGAAGCGGAATG
CTTTTACCGAGGAAAAAGGCGAAAAAGCTGCACAGTTGATGAGAAGAAAG
CAATAGAAAGTACTCCTTTCGCTCAAGTTCCC
back to top

protein sequence of NO08G02890.1

>NO08G02890.1-protein ID=NO08G02890.1-protein|Name=NO08G02890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MVVASLDRNIWICASDGDLAGVQEFLEEGGMDVNAADEFGYTCLHAAASY
GHVGLVQFLIGRGGNVALRDPDGDTPLHVCEEVDVAQVLVENGADPQSQN
MEGKRPHDIALEDGHLPLGNYLRGLCGLPPLTAAQAQAAMAALESQDNGE
QGEDQEVHQMGLQDLQAFVEGQEEEQEEDDVERGKESGMEENKMAE*
back to top
Synonyms
Publications