NO08G02890.1, NO08G02890.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02890.1
Unique NameNO08G02890.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length956
Alignment locationchr8:811225..812306 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:811225..812306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G02890.1 vs.
Match: XP_005852515.1 (putative ankyrin repeat protein [Nannochloropsis gaditana CCMP526]; EKU23318.1 putative ankyrin repeat protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 241.5 bits (615), Expect = 2.200e-60
Identity = 125/201 (62.19%), Postives = 156/201 (77.61%), Query Frame = 0 
Query:    1 MVVASLDRNIWICASDGDLAGVQEFLEEGGMDVNAADEFGYTCLHAAASYGHVGLVQFLIGRGGNVALRDPDGDTPLHVCEEVDVAQVLVENGADPQSQNMEGKRPHDIALEDGHLPLGNYLRGLCGLPPLTAAQAQAAMAALESQDNG-EQGED--QEVHQMGLQDLQAFV--EGQEEEQEEDDVERGKESGMEENKMAE 197
            MV A+LDRNIWICASDGDL+GV+EFL++GG+DVN+ADEFGYTCLHAA+SYGHV L+QFL+GRGG+V +RDPDGDTPLHVCE+V  A+ LV +GADPQ++N +GKRPHD+ALE+GH+ +  YLR LCGLPPL+  Q Q AM A++   N  E G D   E     L DL+AF+   G+EEE +E D ++  E  MEE  MAE
Sbjct:    1 MVAATLDRNIWICASDGDLSGVKEFLDDGGLDVNSADEFGYTCLHAASSYGHVELIQFLVGRGGDVDMRDPDGDTPLHVCEDVAAAEALVTHGADPQARNNQGKRPHDVALEEGHVAVAGYLRPLCGLPPLSTEQMQRAMVAVDQASNDVENGGDVCAENCTATLADLEAFIASSGREEEGKEAD-DKESEDAMEETNMAE 200
The following BLAST results are available for this feature:
BLAST of NO08G02890.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852515.12.200e-6062.19putative ankyrin repeat protein [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02890NO08G02890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02890.1NO08G02890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02890.1.cds1NO08G02890.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02890.1.cds2NO08G02890.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02890.1 ID=NO08G02890.1|Name=NO08G02890.1|organism=Nannochloropsis oceanica|type=mRNA|length=956bp
ACCCACCAATCCCTCGATTATCCGCACCAAAACTCTCAGACAGGAGCGAT
GGTAGTGGCCTCGCTCGACCGCAACATTTGGATCTGCGCTTCTGACGGAG
ATCTGGCCGGCGTCCAAGAATTCCTAGAGGAAGGTGGCATGGATGTGAAT
GCGGCGGATGAATTTGGATACACGTGCTTGCATGCCGCGGCGTCGTACGG
GCATGTGGGCTTGGTTCAGTTCCTTATTGGGCGAGGTGGGAACGTTGCCT
TGCGTGACCCGGACGGGGACACGCCCTTGCATGTGTGCGAGGAAGTAGAC
GTGGCCCAGGTTCTGGTTGAAAATGGTGCAGATCCACAATCTCAGAACAT
GGAGGGGAAGCGGCCACATGACATTGCGTTGGAAGATGGGCATTTGCCGT
TGGGAAATTACTTGCGGGGGTTGTGTGGCTTGCCGCCCTTGACGGCAGCC
CAGGCGCAGGCAGCCATGGCGGCGCTGGAGTCGCAGGATAATGGAGAGCA
AGGGGAGGATCAGGAGGTGCATCAGATGGGATTACAAGATCTGCAGGCTT
TTGTGGAAGGGCAGGAAGAGGAGCAGGAGGAGGATGATGTGGAGAGGGGG
AAGGAGAGTGGGATGGAGGAGAATAAAATGGCAGAGTGAGAGGGAAGGAC
TCGAGAAATAAATAGCGGGAGAGAGAGAGAGGGGGGGGGGGATAGAGAGA
GAGAGAGACTATATGATCTTGGGGTTCAAAAATAAGGAAAAGTGTTTAAT
GGTACGCTCGTGATAGAAAGCACGTGATAGACTGACTAAGGTATCGATGA
GAGATTTAGCCCCGAAGGGAGCGGATCAGTCAAACCTGAGTGCCTCAGAG
ATCACAGATTAAAGAAGCGGAATGCTTTTACCGAGGAAAAAGGCGAAAAA
GCTGCACAGTTGATGAGAAGAAAGCAATAGAAAGTACTCCTTTCGCTCAA
GTTCCC
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protein sequence of NO08G02890.1

>NO08G02890.1-protein ID=NO08G02890.1-protein|Name=NO08G02890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MVVASLDRNIWICASDGDLAGVQEFLEEGGMDVNAADEFGYTCLHAAASY
GHVGLVQFLIGRGGNVALRDPDGDTPLHVCEEVDVAQVLVENGADPQSQN
MEGKRPHDIALEDGHLPLGNYLRGLCGLPPLTAAQAQAAMAALESQDNGE
QGEDQEVHQMGLQDLQAFVEGQEEEQEEDDVERGKESGMEENKMAE*
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mRNA from alignment at chr8:811225..812306+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02890.1 ID=NO08G02890.1|Name=NO08G02890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1082bp|location=Sequence derived from alignment at chr8:811225..812306+ (Nannochloropsis oceanica)
ACCCACCAATCCCTCGATTATCCGCACCAAAACTCTCAGACAGGAGCGAT
GGTAGTGGCCTCGCTCGACCGCAACATTTGGATCTGCGCTTCTGGTAAGT
TGAATTGTAATTATTATCTTGTCATGGTCTCATCCACCACCAGTCCCTCG
TCCCACCACCTCCTAGACCTCCCCACTCACCCCGCCCTCCCTAAACGCCA
ATCCTCCCAAATCCCACCAGACGGAGATCTGGCCGGCGTCCAAGAATTCC
TAGAGGAAGGTGGCATGGATGTGAATGCGGCGGATGAATTTGGATACACG
TGCTTGCATGCCGCGGCGTCGTACGGGCATGTGGGCTTGGTTCAGTTCCT
TATTGGGCGAGGTGGGAACGTTGCCTTGCGTGACCCGGACGGGGACACGC
CCTTGCATGTGTGCGAGGAAGTAGACGTGGCCCAGGTTCTGGTTGAAAAT
GGTGCAGATCCACAATCTCAGAACATGGAGGGGAAGCGGCCACATGACAT
TGCGTTGGAAGATGGGCATTTGCCGTTGGGAAATTACTTGCGGGGGTTGT
GTGGCTTGCCGCCCTTGACGGCAGCCCAGGCGCAGGCAGCCATGGCGGCG
CTGGAGTCGCAGGATAATGGAGAGCAAGGGGAGGATCAGGAGGTGCATCA
GATGGGATTACAAGATCTGCAGGCTTTTGTGGAAGGGCAGGAAGAGGAGC
AGGAGGAGGATGATGTGGAGAGGGGGAAGGAGAGTGGGATGGAGGAGAAT
AAAATGGCAGAGTGAGAGGGAAGGACTCGAGAAATAAATAGCGGGAGAGA
GAGAGAGGGGGGGGGGGATAGAGAGAGAGAGAGACTATATGATCTTGGGG
TTCAAAAATAAGGAAAAGTGTTTAATGGTACGCTCGTGATAGAAAGCACG
TGATAGACTGACTAAGGTATCGATGAGAGATTTAGCCCCGAAGGGAGCGG
ATCAGTCAAACCTGAGTGCCTCAGAGATCACAGATTAAAGAAGCGGAATG
CTTTTACCGAGGAAAAAGGCGAAAAAGCTGCACAGTTGATGAGAAGAAAG
CAATAGAAAGTACTCCTTTCGCTCAAGTTCCC
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Coding sequence (CDS) from alignment at chr8:811225..812306+

>NO08G02890.1 ID=NO08G02890.1|Name=NO08G02890.1|organism=Nannochloropsis oceanica|type=CDS|length=591bp|location=Sequence derived from alignment at chr8:811225..812306+ (Nannochloropsis oceanica)
ATGGTAGTGGCCTCGCTCGACCGCAACATTTGGATCTGCGCTTCTGACGG
AGATCTGGCCGGCGTCCAAGAATTCCTAGAGGAAGGTGGCATGGATGTGA
ATGCGGCGGATGAATTTGGATACACGTGCTTGCATGCCGCGGCGTCGTAC
GGGCATGTGGGCTTGGTTCAGTTCCTTATTGGGCGAGGTGGGAACGTTGC
CTTGCGTGACCCGGACGGGGACACGCCCTTGCATGTGTGCGAGGAAGTAG
ACGTGGCCCAGGTTCTGGTTGAAAATGGTGCAGATCCACAATCTCAGAAC
ATGGAGGGGAAGCGGCCACATGACATTGCGTTGGAAGATGGGCATTTGCC
GTTGGGAAATTACTTGCGGGGGTTGTGTGGCTTGCCGCCCTTGACGGCAG
CCCAGGCGCAGGCAGCCATGGCGGCGCTGGAGTCGCAGGATAATGGAGAG
CAAGGGGAGGATCAGGAGGTGCATCAGATGGGATTACAAGATCTGCAGGC
TTTTGTGGAAGGGCAGGAAGAGGAGCAGGAGGAGGATGATGTGGAGAGGG
GGAAGGAGAGTGGGATGGAGGAGAATAAAATGGCAGAGTGA
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Synonyms
Publications