NO08G02510, NO08G02510 (gene) Nannochloropsis oceanica

Overview
NameNO08G02510
Unique NameNO08G02510
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length420
Alignment locationchr8:721278..721697 +

Link to JBrowse

Properties
Property NameValue
DescriptionPol polyprotein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:721278..721697 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO08G02510 vs. NCBI_GenBank
Match: EWM27401.1 (pol polyprotein [Nannochloropsis gaditana])

HSP 1 Score: 156.8 bits (395), Expect = 5.000e-35
Identity = 77/136 (56.62%), Postives = 91/136 (66.91%), Query Frame = 0
Query:    4 ASSAKQQITCGTWPWCRLIAAGLTVSPAKRKFARYETTFLGFTVSKDGIKANPEAVSAVKNFPNTRNLRGVRAFVGLCSYYRCFIEGFSTIAGPLNDLTCNTTRWHWGKAQKGAFDKLKQALISAPVLAFPEPNKG 140
            +S+A+Q I        RL  AGLT  P+K KFAR ET FLGF VS +GIK NPE +SAV +FP  R +R VR+F+ LCSYYR F++GF  IAGPL  L C T RW W + Q  AF+ LK AL   PVLAF EPNKG
Sbjct:   59 SSTAEQHIKDAATTLHRLFDAGLTAYPSKCKFARAETNFLGFIVSPEGIKPNPETISAVVDFPVPRGVRDVRSFLSLCSYYRRFVKGFPAIAGPLTKLLCKTQRWEWNEDQNRAFENLKAALTPPPVLAFQEPNKG 194          
BLAST of NO08G02510 vs. NCBI_GenBank
Match: EGO03217.1 (hypothetical protein SERLA73DRAFT_24690, partial [Serpula lacrymans var. lacrymans S7.3])

HSP 1 Score: 124.0 bits (310), Expect = 3.600e-25
Identity = 59/119 (49.58%), Postives = 76/119 (63.87%), Query Frame = 0
Query:   20 RLIAAGLTVSPAKRKFARYETTFLGFTVSKDGIKANPEAVSAVKNFPNTRNLRGVRAFVGLCSYYRCFIEGFSTIAGPLNDLTCNTTRWHWGKAQKGAFDKLKQALISAPVLAFPEPNK 139
            RL    L V P K  F   E  FLG  + ++GI+ NPE V A+  +P    ++GVRAF+GL ++YR FIE F+ I  PLNDLT     WHWG  ++ AFDKLKQA  +AP+LAFPE +K
Sbjct:   46 RLQERDLFVKPEKCNFKVKEVDFLGMIIGQNGIRMNPEKVQAILEWPEPTRVKGVRAFLGLGNFYRRFIENFAKITRPLNDLTKKDIVWHWGAREQEAFDKLKQAFTTAPILAFPELDK 164          
BLAST of NO08G02510 vs. NCBI_GenBank
Match: KXJ16458.1 (Transposon Ty3-G Gag-Pol polyprotein [Exaiptasia pallida])

HSP 1 Score: 122.5 bits (306), Expect = 1.100e-24
Identity = 57/115 (49.57%), Postives = 79/115 (68.70%), Query Frame = 0
Query:   20 RLIAAGLTVSPAKRKFARYETTFLGFTVSKDGIKANPEAVSAVKNFPNTRNLRGVRAFVGLCSYYRCFIEGFSTIAGPLNDLTCNTTRWHWGKAQKGAFDKLKQALISAPVLAFP 135
            RL  A L + P K  FA     +LG  +S DG++ NP+ + AV  FP  +NL+GVR+F+GL +YYR F++GF+ IA PLN+LT  + ++ W +  + AFD LKQALISAP+LAFP
Sbjct: 1339 RLRXANLCLKPTKCAFASPTIEYLGHIISADGVQPNPDKIKAVAEFPIPKNLKGVRSFLGLANYYRRFVQGFAKIAVPLNNLTRKSVKFQWTQECQTAFDTLKQALISAPILAFP 1453          
BLAST of NO08G02510 vs. NCBI_GenBank
Match: KXJ21442.1 (Transposon Ty3-I Gag-Pol polyprotein [Exaiptasia pallida])

HSP 1 Score: 122.5 bits (306), Expect = 1.100e-24
Identity = 60/122 (49.18%), Postives = 82/122 (67.21%), Query Frame = 0
Query:   20 RLIAAGLTVSPAKRKFARYETTFLGFTVSKDGIKANPEAVSAVKNFPNTRNLRGVRAFVGLCSYYRCFIEGFSTIAGPLNDLTCNTTRWHWGKAQKGAFDKLKQALISAPVLAFP--EPNKG 140
            R+  AGL + P K +F + E  FLG  VS  GIK +P+ V++VKN+P   +++ ++ F+GL SYYR FI GFS IA PLN L      +HWG++Q  AF+KLK  LI+APVLA+P  +PN G
Sbjct:  398 RIKIAGLKLKPEKCQFLKKEVKFLGHVVSSQGIKTDPDKVASVKNWPIPVDMKELQCFLGLASYYRRFIPGFSIIAEPLNRLCRKGVPFHWGESQASAFEKLKTRLINAPVLAYPNFQPNAG 519          
BLAST of NO08G02510 vs. NCBI_GenBank
Match: GBC44946.1 (gag-pol fusion protein [Rhizophagus irregularis DAOM 181602])

HSP 1 Score: 122.1 bits (305), Expect = 1.400e-24
Identity = 59/119 (49.58%), Postives = 78/119 (65.55%), Query Frame = 0
Query:   20 RLIAAGLTVSPAKRKFARYETTFLGFTVSKDGIKANPEAVSAVKNFPNTRNLRGVRAFVGLCSYYRCFIEGFSTIAGPLNDLTCNTTRWHWGKAQKGAFDKLKQALISAPVLAFPEPNK 139
            RL  AGL ++P K KFA  E  FLG  +SKDGI+ +P  +S VK+FP   NL  +R F+GL SYYR FI+ FS IA PLN L      ++W  AQ+ AF+ LK  LIS+P+L +P+ N+
Sbjct: 1330 RLRDAGLKLNPEKCKFASTELAFLGHVISKDGIRTDPGKISKVKDFPRPTNLTQLRGFLGLASYYRRFIKDFSKIANPLNKLLKKNVPFNWTNAQQQAFEYLKNCLISSPILTYPQWNR 1448          
BLAST of NO08G02510 vs. NCBI_GenBank
Match: GBC39316.1 (gag-pol fusion protein [Rhizophagus irregularis DAOM 181602])

HSP 1 Score: 122.1 bits (305), Expect = 1.400e-24
Identity = 59/119 (49.58%), Postives = 78/119 (65.55%), Query Frame = 0
Query:   20 RLIAAGLTVSPAKRKFARYETTFLGFTVSKDGIKANPEAVSAVKNFPNTRNLRGVRAFVGLCSYYRCFIEGFSTIAGPLNDLTCNTTRWHWGKAQKGAFDKLKQALISAPVLAFPEPNK 139
            RL  AGL ++P K KFA  E  FLG  +SKDGI+ +P  +S VK+FP   NL  +R F+GL SYYR FI+ FS IA PLN L      ++W  AQ+ AF+ LK  LIS+P+L +P+ N+
Sbjct: 1293 RLRDAGLKLNPEKCKFASTELAFLGHVISKDGIRTDPGKISKVKDFPRPTNLTQLRGFLGLASYYRRFIKDFSKIANPLNKLLKKNVPFNWTNAQQQAFEYLKNCLISSPILTYPQWNR 1411          
BLAST of NO08G02510 vs. NCBI_GenBank
Match: GBC27599.1 (gag-pol fusion protein [Rhizophagus irregularis DAOM 181602])

HSP 1 Score: 122.1 bits (305), Expect = 1.400e-24
Identity = 59/119 (49.58%), Postives = 78/119 (65.55%), Query Frame = 0
Query:   20 RLIAAGLTVSPAKRKFARYETTFLGFTVSKDGIKANPEAVSAVKNFPNTRNLRGVRAFVGLCSYYRCFIEGFSTIAGPLNDLTCNTTRWHWGKAQKGAFDKLKQALISAPVLAFPEPNK 139
            RL  AGL ++P K KFA  E  FLG  +SKDGI+ +P  +S VK+FP   NL  +R F+GL SYYR FI+ FS IA PLN L      ++W  AQ+ AF+ LK  LIS+P+L +P+ N+
Sbjct: 1330 RLRDAGLKLNPEKCKFASTELAFLGHVISKDGIRTDPGKISKVKDFPRPTNLTQLRGFLGLASYYRRFIKDFSKIANPLNKLLKKNVPFNWTNAQQQAFEYLKNCLISSPILTYPQWNR 1448          
BLAST of NO08G02510 vs. NCBI_GenBank
Match: KXJ28715.1 (Retrovirus-related Pol polyprotein from transposon 412 [Exaiptasia pallida])

HSP 1 Score: 121.7 bits (304), Expect = 1.800e-24
Identity = 60/122 (49.18%), Postives = 80/122 (65.57%), Query Frame = 0
Query:   20 RLIAAGLTVSPAKRKFARYETTFLGFTVSKDGIKANPEAVSAVKNFPNTRNLRGVRAFVGLCSYYRCFIEGFSTIAGPLNDLTCNTTRWHWGKAQKGAFDKLKQALISAPVLAFP--EPNKG 140
            R+  AGL + P K +F + E  FLG  VS  GIK +P+ V+ VKN+P   +++ ++ F+GL SYYR FI GFS IA PLN L      +HWG++Q  AF+KLK  LI APVLA+P  +PN G
Sbjct:  186 RITIAGLKLKPEKYQFFKKEVKFLGHVVSSQGIKTDPDKVAFVKNWPIPVDVKELQRFLGLASYYRRFISGFSIIAEPLNHLCRKGVPFHWGESQASAFEKLKTRLIDAPVLAYPNFQPNAG 307          
BLAST of NO08G02510 vs. NCBI_GenBank
Match: GBC53575.1 (retrotransposable element [Rhizophagus irregularis DAOM 181602])

HSP 1 Score: 121.7 bits (304), Expect = 1.800e-24
Identity = 59/119 (49.58%), Postives = 78/119 (65.55%), Query Frame = 0
Query:   20 RLIAAGLTVSPAKRKFARYETTFLGFTVSKDGIKANPEAVSAVKNFPNTRNLRGVRAFVGLCSYYRCFIEGFSTIAGPLNDLTCNTTRWHWGKAQKGAFDKLKQALISAPVLAFPEPNK 139
            RL  AGL ++P K KFA  E  FLG  +SKDGI+ +P  +S VK+FP   NL  +R F+GL SYYR FI+ FS IA PLN L      ++W  AQ+ AF+ LK  LIS+P+L +P+ N+
Sbjct:  101 RLRDAGLKLNPEKCKFASTELAFLGHVISKDGIRTDPGKISKVKDFPRPTNLTQLRGFLGLASYYRRFIKDFSKIANPLNKLLKKNIPFNWTNAQQQAFEYLKNCLISSPILTYPQWNR 219          
BLAST of NO08G02510 vs. NCBI_GenBank
Match: EGO04037.1 (hypothetical protein SERLA73DRAFT_24689, partial [Serpula lacrymans var. lacrymans S7.3])

HSP 1 Score: 121.3 bits (303), Expect = 2.400e-24
Identity = 57/113 (50.44%), Postives = 75/113 (66.37%), Query Frame = 0
Query:   26 LTVSPAKRKFARYETTFLGFTVSKDGIKANPEAVSAVKNFPNTRNLRGVRAFVGLCSYYRCFIEGFSTIAGPLNDLTCNTTRWHWGKAQKGAFDKLKQALISAPVLAFPEPNK 139
            L V P K  F   E  FLG  +S++GI+ +PE V A+  +P    ++GVRAF+GL ++YR FIE F+ I  PLNDLT     WHWG  ++ AFDKLKQA  +AP+LAFPE +K
Sbjct:   52 LFVKPEKCNFKVKEVDFLGMIISQNGIRMDPEKVQAILEWPEPTCVKGVRAFLGLGNFYRRFIENFAKITRPLNDLTKKDIVWHWGAKEQEAFDKLKQAFTTAPILAFPELDK 164          
The following BLAST results are available for this feature:
BLAST of NO08G02510 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27401.15.000e-3556.62pol polyprotein [Nannochloropsis gaditana][more]
EGO03217.13.600e-2549.58hypothetical protein SERLA73DRAFT_24690, partial [... [more]
KXJ16458.11.100e-2449.57Transposon Ty3-G Gag-Pol polyprotein [Exaiptasia p... [more]
KXJ21442.11.100e-2449.18Transposon Ty3-I Gag-Pol polyprotein [Exaiptasia p... [more]
GBC44946.11.400e-2449.58gag-pol fusion protein [Rhizophagus irregularis DA... [more]
GBC39316.11.400e-2449.58gag-pol fusion protein [Rhizophagus irregularis DA... [more]
GBC27599.11.400e-2449.58gag-pol fusion protein [Rhizophagus irregularis DA... [more]
KXJ28715.11.800e-2449.18Retrovirus-related Pol polyprotein from transposon... [more]
GBC53575.11.800e-2449.58retrotransposable element [Rhizophagus irregularis... [more]
EGO04037.12.400e-2450.44hypothetical protein SERLA73DRAFT_24689, partial [... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02510.1NO08G02510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02510.1NO08G02510.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02510 ID=NO08G02510|Name=NO08G02510|organism=Nannochloropsis oceanica|type=gene|length=420bp
ATGACATCTGCGTCTTCAGCAAAACAGCAGATCACGTGCGGGACGTGGCC
TTGGTGCAGGCTGATTGCGGCTGGGCTGACGGTATCCCCGGCCAAGCGCA
AGTTCGCGCGCTATGAGACAACGTTTTTGGGCTTCACCGTCTCCAAGGAT
GGCATCAAGGCCAACCCGGAGGCAGTATCGGCGGTCAAGAATTTTCCTAA
CACCAGGAACCTGCGCGGCGTGCGGGCATTCGTGGGCCTATGCTCATACT
ACCGGTGCTTCATCGAGGGCTTCTCCACCATCGCCGGACCACTCAATGAT
CTCACGTGCAACACCACGCGCTGGCACTGGGGCAAGGCGCAAAAAGGGGC
GTTTGACAAACTCAAGCAGGCGCTCATCTCGGCACCAGTGCTGGCCTTCC
CAGAACCCAACAAGGGGTAG
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protein sequence of NO08G02510.1

>NO08G02510.1-protein ID=NO08G02510.1-protein|Name=NO08G02510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MTSASSAKQQITCGTWPWCRLIAAGLTVSPAKRKFARYETTFLGFTVSKD
GIKANPEAVSAVKNFPNTRNLRGVRAFVGLCSYYRCFIEGFSTIAGPLND
LTCNTTRWHWGKAQKGAFDKLKQALISAPVLAFPEPNKG*
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Synonyms
Publications