NO08G02510.1, NO08G02510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02510.1
Unique NameNO08G02510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length420
Alignment locationchr8:721278..721697 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:721278..721697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G02510.1 vs.
Match: EWM27401.1 (pol polyprotein [Nannochloropsis gaditana])

HSP 1 Score: 156.8 bits (395), Expect = 5.000e-35
Identity = 77/136 (56.62%), Postives = 91/136 (66.91%), Query Frame = 0 
Query:    4 ASSAKQQITCGTWPWCRLIAAGLTVSPAKRKFARYETTFLGFTVSKDGIKANPEAVSAVKNFPNTRNLRGVRAFVGLCSYYRCFIEGFSTIAGPLNDLTCNTTRWHWGKAQKGAFDKLKQALISAPVLAFPEPNKG 140
            +S+A+Q I        RL  AGLT  P+K KFAR ET FLGF VS +GIK NPE +SAV +FP  R +R VR+F+ LCSYYR F++GF  IAGPL  L C T RW W + Q  AF+ LK AL   PVLAF EPNKG
Sbjct:   59 SSTAEQHIKDAATTLHRLFDAGLTAYPSKCKFARAETNFLGFIVSPEGIKPNPETISAVVDFPVPRGVRDVRSFLSLCSYYRRFVKGFPAIAGPLTKLLCKTQRWEWNEDQNRAFENLKAALTPPPVLAFQEPNKG 194
The following BLAST results are available for this feature:
BLAST of NO08G02510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27401.15.000e-3556.62pol polyprotein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02510NO08G02510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02510.1NO08G02510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02510.1.cds1NO08G02510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02510.1 ID=NO08G02510.1|Name=NO08G02510.1|organism=Nannochloropsis oceanica|type=mRNA|length=420bp
ATGACATCTGCGTCTTCAGCAAAACAGCAGATCACGTGCGGGACGTGGCC
TTGGTGCAGGCTGATTGCGGCTGGGCTGACGGTATCCCCGGCCAAGCGCA
AGTTCGCGCGCTATGAGACAACGTTTTTGGGCTTCACCGTCTCCAAGGAT
GGCATCAAGGCCAACCCGGAGGCAGTATCGGCGGTCAAGAATTTTCCTAA
CACCAGGAACCTGCGCGGCGTGCGGGCATTCGTGGGCCTATGCTCATACT
ACCGGTGCTTCATCGAGGGCTTCTCCACCATCGCCGGACCACTCAATGAT
CTCACGTGCAACACCACGCGCTGGCACTGGGGCAAGGCGCAAAAAGGGGC
GTTTGACAAACTCAAGCAGGCGCTCATCTCGGCACCAGTGCTGGCCTTCC
CAGAACCCAACAAGGGGTAG
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protein sequence of NO08G02510.1

>NO08G02510.1-protein ID=NO08G02510.1-protein|Name=NO08G02510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MTSASSAKQQITCGTWPWCRLIAAGLTVSPAKRKFARYETTFLGFTVSKD
GIKANPEAVSAVKNFPNTRNLRGVRAFVGLCSYYRCFIEGFSTIAGPLND
LTCNTTRWHWGKAQKGAFDKLKQALISAPVLAFPEPNKG*
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mRNA from alignment at chr8:721278..721697+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02510.1 ID=NO08G02510.1|Name=NO08G02510.1|organism=Nannochloropsis oceanica|type=mRNA|length=420bp|location=Sequence derived from alignment at chr8:721278..721697+ (Nannochloropsis oceanica)
ATGACATCTGCGTCTTCAGCAAAACAGCAGATCACGTGCGGGACGTGGCC
TTGGTGCAGGCTGATTGCGGCTGGGCTGACGGTATCCCCGGCCAAGCGCA
AGTTCGCGCGCTATGAGACAACGTTTTTGGGCTTCACCGTCTCCAAGGAT
GGCATCAAGGCCAACCCGGAGGCAGTATCGGCGGTCAAGAATTTTCCTAA
CACCAGGAACCTGCGCGGCGTGCGGGCATTCGTGGGCCTATGCTCATACT
ACCGGTGCTTCATCGAGGGCTTCTCCACCATCGCCGGACCACTCAATGAT
CTCACGTGCAACACCACGCGCTGGCACTGGGGCAAGGCGCAAAAAGGGGC
GTTTGACAAACTCAAGCAGGCGCTCATCTCGGCACCAGTGCTGGCCTTCC
CAGAACCCAACAAGGGGTAG
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Coding sequence (CDS) from alignment at chr8:721278..721697+

>NO08G02510.1 ID=NO08G02510.1|Name=NO08G02510.1|organism=Nannochloropsis oceanica|type=CDS|length=420bp|location=Sequence derived from alignment at chr8:721278..721697+ (Nannochloropsis oceanica)
ATGACATCTGCGTCTTCAGCAAAACAGCAGATCACGTGCGGGACGTGGCC
TTGGTGCAGGCTGATTGCGGCTGGGCTGACGGTATCCCCGGCCAAGCGCA
AGTTCGCGCGCTATGAGACAACGTTTTTGGGCTTCACCGTCTCCAAGGAT
GGCATCAAGGCCAACCCGGAGGCAGTATCGGCGGTCAAGAATTTTCCTAA
CACCAGGAACCTGCGCGGCGTGCGGGCATTCGTGGGCCTATGCTCATACT
ACCGGTGCTTCATCGAGGGCTTCTCCACCATCGCCGGACCACTCAATGAT
CTCACGTGCAACACCACGCGCTGGCACTGGGGCAAGGCGCAAAAAGGGGC
GTTTGACAAACTCAAGCAGGCGCTCATCTCGGCACCAGTGCTGGCCTTCC
CAGAACCCAACAAGGGGTAG
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Synonyms
Publications