NO08G02240, NO08G02240 (gene) Nannochloropsis oceanica

Overview
NameNO08G02240
Unique NameNO08G02240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length801
Alignment locationchr8:659059..659859 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:659059..659859 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO08G02240 vs. NCBI_GenBank
Match: EWM26679.1 (hypothetical protein Naga_100001g130 [Nannochloropsis gaditana])

HSP 1 Score: 309.7 bits (792), Expect = 8.900e-81
Identity = 152/223 (68.16%), Postives = 177/223 (79.37%), Query Frame = 0 
Query:   45 YDDAYYRTLLNHVNAQVSLAHPGPGLATLHDVRHDEDEGEAAAAASPPATLCVWLLISHTVLGTCWHLEVENTFTRPLKIYFFLSSLLLVFFMSVKIRLATTFAEFLVVATILNAFHYGQRRAFFRFQTSLFLWPFFALGMISTLGIWDLVLVVQSGAEGLHHEVGVAITTYLFGFLLPEVLGRAVQWQRQRH-RQEGEDPLRCQRQTRRAAGGNHFEEYSIL 267
            YDDAYYRTLLN V+AQ+ L+H GPGL T H  RH+E+EGE + A +PPATLC W+L SHT+LG CWHLE+ENTFTRPLKIYF L+SLLLVFF+SVKIRLAT FAE +V+A I NAFHY QR AFFRFQ+SLFLWPF A  +  TL +WD+VLV++ G+EGLHHEVGVAI TY+FGFL+PEV  RA+QWQ QR  R+EG      Q    R  GG HFEEYSIL
Sbjct:   67 YDDAYYRTLLNRVDAQLFLSHSGPGLVTFHGGRHEEEEGEVSEATAPPATLCAWILTSHTILGACWHLELENTFTRPLKIYFLLTSLLLVFFLSVKIRLATYFAEIVVIAVITNAFHYCQREAFFRFQSSLFLWPFLAAALTFTLTVWDVVLVIKGGSEGLHHEVGVAIVTYIFGFLIPEVFVRAIQWQGQRRPREEGAR----QDSAERGPGGAHFEEYSIL 285
The following BLAST results are available for this feature:
BLAST of NO08G02240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26679.18.900e-8168.16hypothetical protein Naga_100001g130 [Nannochlorop... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008811NSK008811Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02240.1NO08G02240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582580gene_3554Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g130gene3838Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02240.1NO08G02240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02240 ID=NO08G02240|Name=NO08G02240|organism=Nannochloropsis oceanica|type=gene|length=801bp
ATGGCAGCCCCAACTACCCTCTCCTCTACTACTTTGGCAAGGCAGCATCA
GCCACCGCCTCAAATGCCACCTCCCGCAATTCTGCCACGTCCGCAACCGC
AGCAGACACCCACGACGACGGCTGCCCACGACTATGATGACGCCTATTAC
CGCACGCTGCTCAACCACGTGAATGCGCAAGTCTCCTTGGCGCATCCCGG
CCCCGGCCTGGCGACCCTTCACGATGTGAGGCATGATGAAGATGAAGGGG
AGGCCGCGGCGGCAGCGTCACCCCCGGCGACGCTCTGTGTCTGGCTGCTA
ATATCGCATACCGTGCTGGGTACCTGCTGGCATTTGGAAGTGGAAAACAC
CTTTACACGACCCCTAAAGATCTATTTTTTCCTCTCGTCACTTCTGTTGG
TCTTCTTCATGAGCGTCAAGATCCGCCTGGCCACCACCTTTGCTGAGTTC
TTGGTGGTGGCTACTATTTTGAATGCCTTTCACTATGGCCAACGCCGGGC
GTTCTTCCGCTTTCAAACCTCCCTCTTCCTCTGGCCCTTCTTCGCCCTCG
GCATGATTTCGACATTAGGTATTTGGGATTTGGTTTTGGTGGTACAGAGT
GGGGCGGAGGGTTTGCATCATGAAGTGGGGGTGGCAATTACCACCTACCT
CTTCGGTTTTCTCCTTCCGGAGGTCCTGGGTCGGGCTGTCCAGTGGCAGC
GCCAGCGCCACCGACAGGAGGGAGAAGATCCATTGCGATGCCAACGACAA
ACGAGAAGGGCTGCGGGGGGCAATCATTTTGAAGAATATAGTATCTTGTA
A
back to top

protein sequence of NO08G02240.1

>NO08G02240.1-protein ID=NO08G02240.1-protein|Name=NO08G02240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MAAPTTLSSTTLARQHQPPPQMPPPAILPRPQPQQTPTTTAAHDYDDAYY
RTLLNHVNAQVSLAHPGPGLATLHDVRHDEDEGEAAAAASPPATLCVWLL
ISHTVLGTCWHLEVENTFTRPLKIYFFLSSLLLVFFMSVKIRLATTFAEF
LVVATILNAFHYGQRRAFFRFQTSLFLWPFFALGMISTLGIWDLVLVVQS
GAEGLHHEVGVAITTYLFGFLLPEVLGRAVQWQRQRHRQEGEDPLRCQRQ
TRRAAGGNHFEEYSIL*
back to top
Synonyms
Publications