NO08G02240.1, NO08G02240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02240.1
Unique NameNO08G02240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length801
Alignment locationchr8:659059..659859 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:659059..659859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G02240.1 vs.
Match: EWM26679.1 (hypothetical protein Naga_100001g130 [Nannochloropsis gaditana])

HSP 1 Score: 315.8 bits (808), Expect = 1.200e-82
Identity = 159/239 (66.53%), Postives = 184/239 (76.99%), Query Frame = 0 
Query:   31 PQPQQTPTTTA--AHDYDDAYYRTLLNHVNAQVSLAHPGPGLATLHDVRHDEDEGEAAAAASPPATLCVWLLISHTVLGTCWHLEVENTFTRPLKIYFFLSSLLLVFFMSVKIRLATTFAEFLVVATILNAFHYGQRRAFFRFQTSLFLWPFFALGMISTLGIWDLVLVVQSGAEGLHHEVGVAITTYLFGFLLPEVLGRAVQWQRQRH-RQEGEDPLRCQRQTRRAAGGNHFEEYSIL 267
            P    TPT TA  A  YDDAYYRTLLN V+AQ+ L+H GPGL T H  RH+E+EGE + A +PPATLC W+L SHT+LG CWHLE+ENTFTRPLKIYF L+SLLLVFF+SVKIRLAT FAE +V+A I NAFHY QR AFFRFQ+SLFLWPF A  +  TL +WD+VLV++ G+EGLHHEVGVAI TY+FGFL+PEV  RA+QWQ QR  R+EG      Q    R  GG HFEEYSIL
Sbjct:   51 PNQDSTPTATASAAESYDDAYYRTLLNRVDAQLFLSHSGPGLVTFHGGRHEEEEGEVSEATAPPATLCAWILTSHTILGACWHLELENTFTRPLKIYFLLTSLLLVFFLSVKIRLATYFAEIVVIAVITNAFHYCQREAFFRFQSSLFLWPFLAAALTFTLTVWDVVLVIKGGSEGLHHEVGVAIVTYIFGFLIPEVFVRAIQWQGQRRPREEGAR----QDSAERGPGGAHFEEYSIL 285
The following BLAST results are available for this feature:
BLAST of NO08G02240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26679.11.200e-8266.53hypothetical protein Naga_100001g130 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02240NO08G02240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02240.1NO08G02240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02240.1.cds1NO08G02240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02240.1 ID=NO08G02240.1|Name=NO08G02240.1|organism=Nannochloropsis oceanica|type=mRNA|length=801bp
ATGGCAGCCCCAACTACCCTCTCCTCTACTACTTTGGCAAGGCAGCATCA
GCCACCGCCTCAAATGCCACCTCCCGCAATTCTGCCACGTCCGCAACCGC
AGCAGACACCCACGACGACGGCTGCCCACGACTATGATGACGCCTATTAC
CGCACGCTGCTCAACCACGTGAATGCGCAAGTCTCCTTGGCGCATCCCGG
CCCCGGCCTGGCGACCCTTCACGATGTGAGGCATGATGAAGATGAAGGGG
AGGCCGCGGCGGCAGCGTCACCCCCGGCGACGCTCTGTGTCTGGCTGCTA
ATATCGCATACCGTGCTGGGTACCTGCTGGCATTTGGAAGTGGAAAACAC
CTTTACACGACCCCTAAAGATCTATTTTTTCCTCTCGTCACTTCTGTTGG
TCTTCTTCATGAGCGTCAAGATCCGCCTGGCCACCACCTTTGCTGAGTTC
TTGGTGGTGGCTACTATTTTGAATGCCTTTCACTATGGCCAACGCCGGGC
GTTCTTCCGCTTTCAAACCTCCCTCTTCCTCTGGCCCTTCTTCGCCCTCG
GCATGATTTCGACATTAGGTATTTGGGATTTGGTTTTGGTGGTACAGAGT
GGGGCGGAGGGTTTGCATCATGAAGTGGGGGTGGCAATTACCACCTACCT
CTTCGGTTTTCTCCTTCCGGAGGTCCTGGGTCGGGCTGTCCAGTGGCAGC
GCCAGCGCCACCGACAGGAGGGAGAAGATCCATTGCGATGCCAACGACAA
ACGAGAAGGGCTGCGGGGGGCAATCATTTTGAAGAATATAGTATCTTGTA
A
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protein sequence of NO08G02240.1

>NO08G02240.1-protein ID=NO08G02240.1-protein|Name=NO08G02240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MAAPTTLSSTTLARQHQPPPQMPPPAILPRPQPQQTPTTTAAHDYDDAYY
RTLLNHVNAQVSLAHPGPGLATLHDVRHDEDEGEAAAAASPPATLCVWLL
ISHTVLGTCWHLEVENTFTRPLKIYFFLSSLLLVFFMSVKIRLATTFAEF
LVVATILNAFHYGQRRAFFRFQTSLFLWPFFALGMISTLGIWDLVLVVQS
GAEGLHHEVGVAITTYLFGFLLPEVLGRAVQWQRQRHRQEGEDPLRCQRQ
TRRAAGGNHFEEYSIL*
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mRNA from alignment at chr8:659059..659859+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02240.1 ID=NO08G02240.1|Name=NO08G02240.1|organism=Nannochloropsis oceanica|type=mRNA|length=801bp|location=Sequence derived from alignment at chr8:659059..659859+ (Nannochloropsis oceanica)
ATGGCAGCCCCAACTACCCTCTCCTCTACTACTTTGGCAAGGCAGCATCA
GCCACCGCCTCAAATGCCACCTCCCGCAATTCTGCCACGTCCGCAACCGC
AGCAGACACCCACGACGACGGCTGCCCACGACTATGATGACGCCTATTAC
CGCACGCTGCTCAACCACGTGAATGCGCAAGTCTCCTTGGCGCATCCCGG
CCCCGGCCTGGCGACCCTTCACGATGTGAGGCATGATGAAGATGAAGGGG
AGGCCGCGGCGGCAGCGTCACCCCCGGCGACGCTCTGTGTCTGGCTGCTA
ATATCGCATACCGTGCTGGGTACCTGCTGGCATTTGGAAGTGGAAAACAC
CTTTACACGACCCCTAAAGATCTATTTTTTCCTCTCGTCACTTCTGTTGG
TCTTCTTCATGAGCGTCAAGATCCGCCTGGCCACCACCTTTGCTGAGTTC
TTGGTGGTGGCTACTATTTTGAATGCCTTTCACTATGGCCAACGCCGGGC
GTTCTTCCGCTTTCAAACCTCCCTCTTCCTCTGGCCCTTCTTCGCCCTCG
GCATGATTTCGACATTAGGTATTTGGGATTTGGTTTTGGTGGTACAGAGT
GGGGCGGAGGGTTTGCATCATGAAGTGGGGGTGGCAATTACCACCTACCT
CTTCGGTTTTCTCCTTCCGGAGGTCCTGGGTCGGGCTGTCCAGTGGCAGC
GCCAGCGCCACCGACAGGAGGGAGAAGATCCATTGCGATGCCAACGACAA
ACGAGAAGGGCTGCGGGGGGCAATCATTTTGAAGAATATAGTATCTTGTA
A
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Coding sequence (CDS) from alignment at chr8:659059..659859+

>NO08G02240.1 ID=NO08G02240.1|Name=NO08G02240.1|organism=Nannochloropsis oceanica|type=CDS|length=801bp|location=Sequence derived from alignment at chr8:659059..659859+ (Nannochloropsis oceanica)
ATGGCAGCCCCAACTACCCTCTCCTCTACTACTTTGGCAAGGCAGCATCA
GCCACCGCCTCAAATGCCACCTCCCGCAATTCTGCCACGTCCGCAACCGC
AGCAGACACCCACGACGACGGCTGCCCACGACTATGATGACGCCTATTAC
CGCACGCTGCTCAACCACGTGAATGCGCAAGTCTCCTTGGCGCATCCCGG
CCCCGGCCTGGCGACCCTTCACGATGTGAGGCATGATGAAGATGAAGGGG
AGGCCGCGGCGGCAGCGTCACCCCCGGCGACGCTCTGTGTCTGGCTGCTA
ATATCGCATACCGTGCTGGGTACCTGCTGGCATTTGGAAGTGGAAAACAC
CTTTACACGACCCCTAAAGATCTATTTTTTCCTCTCGTCACTTCTGTTGG
TCTTCTTCATGAGCGTCAAGATCCGCCTGGCCACCACCTTTGCTGAGTTC
TTGGTGGTGGCTACTATTTTGAATGCCTTTCACTATGGCCAACGCCGGGC
GTTCTTCCGCTTTCAAACCTCCCTCTTCCTCTGGCCCTTCTTCGCCCTCG
GCATGATTTCGACATTAGGTATTTGGGATTTGGTTTTGGTGGTACAGAGT
GGGGCGGAGGGTTTGCATCATGAAGTGGGGGTGGCAATTACCACCTACCT
CTTCGGTTTTCTCCTTCCGGAGGTCCTGGGTCGGGCTGTCCAGTGGCAGC
GCCAGCGCCACCGACAGGAGGGAGAAGATCCATTGCGATGCCAACGACAA
ACGAGAAGGGCTGCGGGGGGCAATCATTTTGAAGAATATAGTATCTTGTA
A
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Synonyms
Publications