NO08G02230, NO08G02230 (gene) Nannochloropsis oceanica

Overview
NameNO08G02230
Unique NameNO08G02230
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1420
Alignment locationchr8:657034..658453 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:657034..658453 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO08G02230 vs. NCBI_GenBank
Match: EWM26634.1 (hypothetical protein Naga_100001g129 [Nannochloropsis gaditana])

HSP 1 Score: 82.8 bits (203), Expect = 2.700e-12
Identity = 126/421 (29.93%), Postives = 164/421 (38.95%), Query Frame = 0 
Query:    1 MQGEEESPHYVAAPGT--NDSGGP---KRTSSRDWGQHWLDLDRDYFRPVSTTDIENLRSQLRNVEEMIIEAEASSLFRPLGIASLNVVGQSACTKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSVRLQPTIQLQPPCPPSDSSXXXXXCSISDKENKAKRGKWRRAAFAGEESVSSPEELQRHGEIDNKKKGLTRTDSMVSIMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVKDEVYPNREEGTQDRSYADGADXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEDADFGREIAYLAWRKGQLHDFLQGEVAYLLRCARLDRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQI-----EMLRGGSQWESDDLTCEIFKRVYR 412
            M+G EE PH  AAP T  ++ GGP   +R+S R    HW  L+R+YFRP +  DI  L  QL++V++ + EAEA  L+R           +S+C +                                       S  RL P+       PPSDSS     CS SDKE K KR   R +    +E  ++   L R  E D+K +                                           D  DE                   XXXXXXXXXXXXXXXXXXXXXXXXX    ED DF REI+ L+ R  +LH  L+GEV  L R ARL+  A                                                  ++      +LRGGS W +DD TCE+++++YR
Sbjct:    1 MEGLEEYPHPNAAPSTVGSNKGGPVEFRRSSQRTLLHHWERLEREYFRPATMQDIITLHVQLKSVQQTLEEAEAPCLYRKR--------LESSCDETFPSRSMAYLDKRQLSNKASRRELLMSGVEDVLVTKSGYSRKRL-PSYAHLSQGPPSDSSASTSHCSFSDKETKFKRMNLRGSE---QEVGANVRNLSRQQESDSKNQ-------------------TARLKPKDRRRAETLEEGDSAGMEDEDDEFETRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGEEEDVDFVREISQLSQRNRELHKILEGEVLKLSRYARLECTAALATSCKVKVDGWNTGCAESAGSDGEHGICSALYGHGIHSQLQRRSHEHEEMTQQMRNVLRGGSMWHTDDATCELYRQLYR 390
The following BLAST results are available for this feature:
BLAST of NO08G02230 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26634.12.700e-1229.93hypothetical protein Naga_100001g129 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02230.1NO08G02230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582576gene_3553Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g129gene3839Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02230.1NO08G02230.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02230 ID=NO08G02230|Name=NO08G02230|organism=Nannochloropsis oceanica|type=gene|length=1420bp
ATGCAGGGGGAGGAGGAGAGTCCGCACTACGTGGCGGCACCCGGCACAAA
TGACAGCGGGGGGCCGAAGCGGACGTCCAGCAGGGACTGGGGACAGCATT
GGCTGGACTTGGACAGGGATTACTTTAGGCCTGTCTCGACCACCGACATT
GAAAATCTTCGATCACAGgtacgcctgcggggttgggggcgtgagatggg
tctgcggaaatgtgcttgtgtaacttatggatgggccctgaccgactccc
ttccctcccttccccaccacagCTTCGGAACGTGGAAGAAATGATTATCG
AAGCGGAGGCCTCCTCTCTTTTCAGGCCGCTAGGTATCGCTTCATTAAAC
GTGGTGGGGCAGTCTGCATGCACCAAGCTCCAGCAGCAGCAGCAGCAGCG
GCAGCAGGAGCAGCAGCAGCAGGAGGAGGTAGCAAGAGAAGAGGAGCGGG
GCCTTCTTCCCACGTCCCAGGAGGAGGCGGAGGAGAACGATGCGAGCTCG
GTGCGGCTTCAACCGACCATCCAACTACAACCGCCATGCCCGCCCTCGGA
CAGCTCAGCATCCACGTCGTCCTGCTCAATCAGCGACAAGGAAAACAAGG
CCAAGAGgtgagtttggagagaaaaaacgtctatcgctaaaaatgcggag
acgcgcatctttattatctgtatcaccacgcttacagGGGAAAATGGCGG
CGGGCTGCTTTTGCTGGGGAAGAAAGTGTGTCTTCTCCAGAAGAGTTGCA
GCGCCATGGCGAGATCGACAATAAGAAGAAGGGTTTGACACGGACGGATT
CCATGGTGTCGATCATGGAGGAGGATGAGGACGAGGATGAGGACGAGGAG
GAAGAGACGCGTTCCGCCTTTTCACGGGAAGATGAAGATGACGATGATGA
CGATGTAGAGGATGTAAAGGACGAGGTTTATCCGAACAGGGAGGAAGGGA
CTCAAGATCGATCGTACGCAGACGGTGCAGATGGGCGAGGAGGGGTAGTT
GGAGGAGGGGGGAAAGGAAGAGGAGGGGTAGGAAGGTTTGGGGTGGAAGA
AGAAGAAGAAGAAAGAGGAGAAGATGCAGATTTTGGACGAGAGATAGCGT
ACTTGGCCTGGCGGAAAGGCCAGCTCCACGATTTTTTGCAGGGGGAAGTC
GCCTACCTCTTACGCTGCGCTCGTTTGGATCGCGCGGCCGCGGCGGCCTC
GTCTCCAGGGACGTCGACTGGGGCGGGTGGCAATTGGAGTAGCAGCAGCA
ACAACACTGACAACGATCCGCACCACCACCACGATCATTACCATCACCAT
CGACACCAGCATGAGCACCTCCAGTTGGAGTTGGCGCGCCAGATAGAGAT
GCTGCGGGGAGGCAGTCAGTGGGAGTCGGACGACCTCACTTGCGAAATCT
TTAAACGCGTCTACCGATAA
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protein sequence of NO08G02230.1

>NO08G02230.1-protein ID=NO08G02230.1-protein|Name=NO08G02230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=412bp
MQGEEESPHYVAAPGTNDSGGPKRTSSRDWGQHWLDLDRDYFRPVSTTDI
ENLRSQLRNVEEMIIEAEASSLFRPLGIASLNVVGQSACTKLQQQQQQRQ
QEQQQQEEVAREEERGLLPTSQEEAEENDASSVRLQPTIQLQPPCPPSDS
SASTSSCSISDKENKAKRGKWRRAAFAGEESVSSPEELQRHGEIDNKKKG
LTRTDSMVSIMEEDEDEDEDEEEETRSAFSREDEDDDDDDVEDVKDEVYP
NREEGTQDRSYADGADGRGGVVGGGGKGRGGVGRFGVEEEEEERGEDADF
GREIAYLAWRKGQLHDFLQGEVAYLLRCARLDRAAAAASSPGTSTGAGGN
WSSSSNNTDNDPHHHHDHYHHHRHQHEHLQLELARQIEMLRGGSQWESDD
LTCEIFKRVYR*
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Synonyms
Publications