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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:657034..658453 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G02230.1 vs.
Match: EWM26634.1 (hypothetical protein Naga_100001g129 [Nannochloropsis gaditana]) HSP 1 Score: 121.3 bits (303), Expect = 6.900e-24 Identity = 151/429 (35.20%), Postives = 213/429 (49.65%), Query Frame = 0
Query: 1 MQGEEESPHYVAAPGT--NDSGGP---KRTSSRDWGQHWLDLDRDYFRPVSTTDIENLRSQLRNVEEMIIEAEASSLFRPLGIASLNVVGQSACTKLQQQQQQRQQEQQQQEEVAREEERGLLPTSQEEAEENDASSVRLQPTIQLQPPCPPSDSSASTSSCSISDKENKAKRGKWRRAAFAGEESVSSPEELQRHGEIDNKKKGL---TRTDSMVSIMEEDED---EDEDEEEETRSAFSREDEDDDDDDVEDVKDEVYPNREEGTQDRSYADGADGRGGVVGGGGKGRGGVGRFGVEEEEEERGEDADFGREIAYLAWRKGQLHDFLQGEVAYLLRCARLDRAAAAASS-----PGTSTG-AGGNWSSSSNNTDNDPHHHHDHYHHHRHQHEHLQLELARQI-EMLRGGSQWESDDLTCEIFKRVYR 412
M+G EE PH AAP T ++ GGP +R+S R HW L+R+YFRP + DI L QL++V++ + EAEA L+R +S+C + + +++Q A E + ++ S RL P+ PPSDSSASTS CS SDKE K KR R + +E ++ L R E D+K + + +EE + EDED+E ETRSAFSR+DEDD ++ +E G ++RS D GG +G G EE ED DF REI+ L+ R +LH L+GEV L R ARL+ AA A+S G +TG A S + + + H H R HEH E+ +Q+ +LRGGS W +DD TCE+++++YR
Sbjct: 1 MEGLEEYPHPNAAPSTVGSNKGGPVEFRRSSQRTLLHHWERLEREYFRPATMQDIITLHVQLKSVQQTLEEAEAPCLYRKR--------LESSCDETFPSRSMAYLDKRQLSNKASRRELLMSGVEDVLVTKSGYSRKRL-PSYAHLSQGPPSDSSASTSHCSFSDKETKFKRMNLRGSE---QEVGANVRNLSRQQESDSKNQTARLKPKDRRRAETLEEGDSAGMEDEDDEFETRSAFSRDDEDDQEE------------QEAGGEERSQEGEMDVFSEEGGGSTEGSG-----------EE--EDVDFVREISQLSQRNRELHKILEGEVLKLSRYARLECTAALATSCKVKVDGWNTGCAESAGSDGEHGICSALYGHGIHSQLQRRSHEH--EEMTQQMRNVLRGGSMWHTDDATCELYRQLYR 390
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G02230.1 ID=NO08G02230.1|Name=NO08G02230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1236bp ATGCAGGGGGAGGAGGAGAGTCCGCACTACGTGGCGGCACCCGGCACAAA TGACAGCGGGGGGCCGAAGCGGACGTCCAGCAGGGACTGGGGACAGCATT GGCTGGACTTGGACAGGGATTACTTTAGGCCTGTCTCGACCACCGACATT GAAAATCTTCGATCACAGCTTCGGAACGTGGAAGAAATGATTATCGAAGC GGAGGCCTCCTCTCTTTTCAGGCCGCTAGGTATCGCTTCATTAAACGTGG TGGGGCAGTCTGCATGCACCAAGCTCCAGCAGCAGCAGCAGCAGCGGCAG CAGGAGCAGCAGCAGCAGGAGGAGGTAGCAAGAGAAGAGGAGCGGGGCCT TCTTCCCACGTCCCAGGAGGAGGCGGAGGAGAACGATGCGAGCTCGGTGC GGCTTCAACCGACCATCCAACTACAACCGCCATGCCCGCCCTCGGACAGC TCAGCATCCACGTCGTCCTGCTCAATCAGCGACAAGGAAAACAAGGCCAA GAGGGGAAAATGGCGGCGGGCTGCTTTTGCTGGGGAAGAAAGTGTGTCTT CTCCAGAAGAGTTGCAGCGCCATGGCGAGATCGACAATAAGAAGAAGGGT TTGACACGGACGGATTCCATGGTGTCGATCATGGAGGAGGATGAGGACGA GGATGAGGACGAGGAGGAAGAGACGCGTTCCGCCTTTTCACGGGAAGATG AAGATGACGATGATGACGATGTAGAGGATGTAAAGGACGAGGTTTATCCG AACAGGGAGGAAGGGACTCAAGATCGATCGTACGCAGACGGTGCAGATGG GCGAGGAGGGGTAGTTGGAGGAGGGGGGAAAGGAAGAGGAGGGGTAGGAA GGTTTGGGGTGGAAGAAGAAGAAGAAGAAAGAGGAGAAGATGCAGATTTT GGACGAGAGATAGCGTACTTGGCCTGGCGGAAAGGCCAGCTCCACGATTT TTTGCAGGGGGAAGTCGCCTACCTCTTACGCTGCGCTCGTTTGGATCGCG CGGCCGCGGCGGCCTCGTCTCCAGGGACGTCGACTGGGGCGGGTGGCAAT TGGAGTAGCAGCAGCAACAACACTGACAACGATCCGCACCACCACCACGA TCATTACCATCACCATCGACACCAGCATGAGCACCTCCAGTTGGAGTTGG CGCGCCAGATAGAGATGCTGCGGGGAGGCAGTCAGTGGGAGTCGGACGAC CTCACTTGCGAAATCTTTAAACGCGTCTACCGATAA back to topprotein sequence of NO08G02230.1 >NO08G02230.1-protein ID=NO08G02230.1-protein|Name=NO08G02230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=412bp MQGEEESPHYVAAPGTNDSGGPKRTSSRDWGQHWLDLDRDYFRPVSTTDI ENLRSQLRNVEEMIIEAEASSLFRPLGIASLNVVGQSACTKLQQQQQQRQ QEQQQQEEVAREEERGLLPTSQEEAEENDASSVRLQPTIQLQPPCPPSDS SASTSSCSISDKENKAKRGKWRRAAFAGEESVSSPEELQRHGEIDNKKKG LTRTDSMVSIMEEDEDEDEDEEEETRSAFSREDEDDDDDDVEDVKDEVYP NREEGTQDRSYADGADGRGGVVGGGGKGRGGVGRFGVEEEEEERGEDADF GREIAYLAWRKGQLHDFLQGEVAYLLRCARLDRAAAAASSPGTSTGAGGN WSSSSNNTDNDPHHHHDHYHHHRHQHEHLQLELARQIEMLRGGSQWESDD LTCEIFKRVYR* back to topmRNA from alignment at chr8:657034..658453- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G02230.1 ID=NO08G02230.1|Name=NO08G02230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1420bp|location=Sequence derived from alignment at chr8:657034..658453- (Nannochloropsis oceanica) ATGCAGGGGGAGGAGGAGAGTCCGCACTACGTGGCGGCACCCGGCACAAA
TGACAGCGGGGGGCCGAAGCGGACGTCCAGCAGGGACTGGGGACAGCATT
GGCTGGACTTGGACAGGGATTACTTTAGGCCTGTCTCGACCACCGACATT
GAAAATCTTCGATCACAGGTACGCCTGCGGGGTTGGGGGCGTGAGATGGG
TCTGCGGAAATGTGCTTGTGTAACTTATGGATGGGCCCTGACCGACTCCC
TTCCCTCCCTTCCCCACCACAGCTTCGGAACGTGGAAGAAATGATTATCG
AAGCGGAGGCCTCCTCTCTTTTCAGGCCGCTAGGTATCGCTTCATTAAAC
GTGGTGGGGCAGTCTGCATGCACCAAGCTCCAGCAGCAGCAGCAGCAGCG
GCAGCAGGAGCAGCAGCAGCAGGAGGAGGTAGCAAGAGAAGAGGAGCGGG
GCCTTCTTCCCACGTCCCAGGAGGAGGCGGAGGAGAACGATGCGAGCTCG
GTGCGGCTTCAACCGACCATCCAACTACAACCGCCATGCCCGCCCTCGGA
CAGCTCAGCATCCACGTCGTCCTGCTCAATCAGCGACAAGGAAAACAAGG
CCAAGAGGTGAGTTTGGAGAGAAAAAACGTCTATCGCTAAAAATGCGGAG
ACGCGCATCTTTATTATCTGTATCACCACGCTTACAGGGGAAAATGGCGG
CGGGCTGCTTTTGCTGGGGAAGAAAGTGTGTCTTCTCCAGAAGAGTTGCA
GCGCCATGGCGAGATCGACAATAAGAAGAAGGGTTTGACACGGACGGATT
CCATGGTGTCGATCATGGAGGAGGATGAGGACGAGGATGAGGACGAGGAG
GAAGAGACGCGTTCCGCCTTTTCACGGGAAGATGAAGATGACGATGATGA
CGATGTAGAGGATGTAAAGGACGAGGTTTATCCGAACAGGGAGGAAGGGA
CTCAAGATCGATCGTACGCAGACGGTGCAGATGGGCGAGGAGGGGTAGTT
GGAGGAGGGGGGAAAGGAAGAGGAGGGGTAGGAAGGTTTGGGGTGGAAGA
AGAAGAAGAAGAAAGAGGAGAAGATGCAGATTTTGGACGAGAGATAGCGT
ACTTGGCCTGGCGGAAAGGCCAGCTCCACGATTTTTTGCAGGGGGAAGTC
GCCTACCTCTTACGCTGCGCTCGTTTGGATCGCGCGGCCGCGGCGGCCTC
GTCTCCAGGGACGTCGACTGGGGCGGGTGGCAATTGGAGTAGCAGCAGCA
ACAACACTGACAACGATCCGCACCACCACCACGATCATTACCATCACCAT
CGACACCAGCATGAGCACCTCCAGTTGGAGTTGGCGCGCCAGATAGAGAT
GCTGCGGGGAGGCAGTCAGTGGGAGTCGGACGACCTCACTTGCGAAATCT
TTAAACGCGTCTACCGATAA back to topCoding sequence (CDS) from alignment at chr8:657034..658453- >NO08G02230.1 ID=NO08G02230.1|Name=NO08G02230.1|organism=Nannochloropsis oceanica|type=CDS|length=1236bp|location=Sequence derived from alignment at chr8:657034..658453- (Nannochloropsis oceanica) ATGCAGGGGGAGGAGGAGAGTCCGCACTACGTGGCGGCACCCGGCACAAA TGACAGCGGGGGGCCGAAGCGGACGTCCAGCAGGGACTGGGGACAGCATT GGCTGGACTTGGACAGGGATTACTTTAGGCCTGTCTCGACCACCGACATT GAAAATCTTCGATCACAGCTTCGGAACGTGGAAGAAATGATTATCGAAGC GGAGGCCTCCTCTCTTTTCAGGCCGCTAGGTATCGCTTCATTAAACGTGG TGGGGCAGTCTGCATGCACCAAGCTCCAGCAGCAGCAGCAGCAGCGGCAG CAGGAGCAGCAGCAGCAGGAGGAGGTAGCAAGAGAAGAGGAGCGGGGCCT TCTTCCCACGTCCCAGGAGGAGGCGGAGGAGAACGATGCGAGCTCGGTGC GGCTTCAACCGACCATCCAACTACAACCGCCATGCCCGCCCTCGGACAGC TCAGCATCCACGTCGTCCTGCTCAATCAGCGACAAGGAAAACAAGGCCAA GAGGGGAAAATGGCGGCGGGCTGCTTTTGCTGGGGAAGAAAGTGTGTCTT CTCCAGAAGAGTTGCAGCGCCATGGCGAGATCGACAATAAGAAGAAGGGT TTGACACGGACGGATTCCATGGTGTCGATCATGGAGGAGGATGAGGACGA GGATGAGGACGAGGAGGAAGAGACGCGTTCCGCCTTTTCACGGGAAGATG AAGATGACGATGATGACGATGTAGAGGATGTAAAGGACGAGGTTTATCCG AACAGGGAGGAAGGGACTCAAGATCGATCGTACGCAGACGGTGCAGATGG GCGAGGAGGGGTAGTTGGAGGAGGGGGGAAAGGAAGAGGAGGGGTAGGAA GGTTTGGGGTGGAAGAAGAAGAAGAAGAAAGAGGAGAAGATGCAGATTTT GGACGAGAGATAGCGTACTTGGCCTGGCGGAAAGGCCAGCTCCACGATTT TTTGCAGGGGGAAGTCGCCTACCTCTTACGCTGCGCTCGTTTGGATCGCG CGGCCGCGGCGGCCTCGTCTCCAGGGACGTCGACTGGGGCGGGTGGCAAT TGGAGTAGCAGCAGCAACAACACTGACAACGATCCGCACCACCACCACGA TCATTACCATCACCATCGACACCAGCATGAGCACCTCCAGTTGGAGTTGG CGCGCCAGATAGAGATGCTGCGGGGAGGCAGTCAGTGGGAGTCGGACGAC CTCACTTGCGAAATCTTTAAACGCGTCTACCGATAA back to top
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