NO08G02230.1, NO08G02230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02230.1
Unique NameNO08G02230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1236
Alignment locationchr8:657034..658453 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:657034..658453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G02230.1 vs.
Match: EWM26634.1 (hypothetical protein Naga_100001g129 [Nannochloropsis gaditana])

HSP 1 Score: 121.3 bits (303), Expect = 6.900e-24
Identity = 151/429 (35.20%), Postives = 213/429 (49.65%), Query Frame = 0 
Query:    1 MQGEEESPHYVAAPGT--NDSGGP---KRTSSRDWGQHWLDLDRDYFRPVSTTDIENLRSQLRNVEEMIIEAEASSLFRPLGIASLNVVGQSACTKLQQQQQQRQQEQQQQEEVAREEERGLLPTSQEEAEENDASSVRLQPTIQLQPPCPPSDSSASTSSCSISDKENKAKRGKWRRAAFAGEESVSSPEELQRHGEIDNKKKGL---TRTDSMVSIMEEDED---EDEDEEEETRSAFSREDEDDDDDDVEDVKDEVYPNREEGTQDRSYADGADGRGGVVGGGGKGRGGVGRFGVEEEEEERGEDADFGREIAYLAWRKGQLHDFLQGEVAYLLRCARLDRAAAAASS-----PGTSTG-AGGNWSSSSNNTDNDPHHHHDHYHHHRHQHEHLQLELARQI-EMLRGGSQWESDDLTCEIFKRVYR 412
            M+G EE PH  AAP T  ++ GGP   +R+S R    HW  L+R+YFRP +  DI  L  QL++V++ + EAEA  L+R           +S+C +    +     +++Q    A   E  +         ++  S  RL P+       PPSDSSASTS CS SDKE K KR   R +    +E  ++   L R  E D+K +      +       +EE +    EDED+E ETRSAFSR+DEDD ++            +E G ++RS     D      GG  +G G           EE  ED DF REI+ L+ R  +LH  L+GEV  L R ARL+  AA A+S      G +TG A    S   +   +  + H  H    R  HEH   E+ +Q+  +LRGGS W +DD TCE+++++YR
Sbjct:    1 MEGLEEYPHPNAAPSTVGSNKGGPVEFRRSSQRTLLHHWERLEREYFRPATMQDIITLHVQLKSVQQTLEEAEAPCLYRKR--------LESSCDETFPSRSMAYLDKRQLSNKASRRELLMSGVEDVLVTKSGYSRKRL-PSYAHLSQGPPSDSSASTSHCSFSDKETKFKRMNLRGSE---QEVGANVRNLSRQQESDSKNQTARLKPKDRRRAETLEEGDSAGMEDEDDEFETRSAFSRDDEDDQEE------------QEAGGEERSQEGEMDVFSEEGGGSTEGSG-----------EE--EDVDFVREISQLSQRNRELHKILEGEVLKLSRYARLECTAALATSCKVKVDGWNTGCAESAGSDGEHGICSALYGHGIHSQLQRRSHEH--EEMTQQMRNVLRGGSMWHTDDATCELYRQLYR 390
The following BLAST results are available for this feature:
BLAST of NO08G02230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26634.16.900e-2435.20hypothetical protein Naga_100001g129 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02230NO08G02230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02230.1NO08G02230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02230.1.cds1NO08G02230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02230.1.cds2NO08G02230.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02230.1.cds3NO08G02230.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02230.1 ID=NO08G02230.1|Name=NO08G02230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1236bp
ATGCAGGGGGAGGAGGAGAGTCCGCACTACGTGGCGGCACCCGGCACAAA
TGACAGCGGGGGGCCGAAGCGGACGTCCAGCAGGGACTGGGGACAGCATT
GGCTGGACTTGGACAGGGATTACTTTAGGCCTGTCTCGACCACCGACATT
GAAAATCTTCGATCACAGCTTCGGAACGTGGAAGAAATGATTATCGAAGC
GGAGGCCTCCTCTCTTTTCAGGCCGCTAGGTATCGCTTCATTAAACGTGG
TGGGGCAGTCTGCATGCACCAAGCTCCAGCAGCAGCAGCAGCAGCGGCAG
CAGGAGCAGCAGCAGCAGGAGGAGGTAGCAAGAGAAGAGGAGCGGGGCCT
TCTTCCCACGTCCCAGGAGGAGGCGGAGGAGAACGATGCGAGCTCGGTGC
GGCTTCAACCGACCATCCAACTACAACCGCCATGCCCGCCCTCGGACAGC
TCAGCATCCACGTCGTCCTGCTCAATCAGCGACAAGGAAAACAAGGCCAA
GAGGGGAAAATGGCGGCGGGCTGCTTTTGCTGGGGAAGAAAGTGTGTCTT
CTCCAGAAGAGTTGCAGCGCCATGGCGAGATCGACAATAAGAAGAAGGGT
TTGACACGGACGGATTCCATGGTGTCGATCATGGAGGAGGATGAGGACGA
GGATGAGGACGAGGAGGAAGAGACGCGTTCCGCCTTTTCACGGGAAGATG
AAGATGACGATGATGACGATGTAGAGGATGTAAAGGACGAGGTTTATCCG
AACAGGGAGGAAGGGACTCAAGATCGATCGTACGCAGACGGTGCAGATGG
GCGAGGAGGGGTAGTTGGAGGAGGGGGGAAAGGAAGAGGAGGGGTAGGAA
GGTTTGGGGTGGAAGAAGAAGAAGAAGAAAGAGGAGAAGATGCAGATTTT
GGACGAGAGATAGCGTACTTGGCCTGGCGGAAAGGCCAGCTCCACGATTT
TTTGCAGGGGGAAGTCGCCTACCTCTTACGCTGCGCTCGTTTGGATCGCG
CGGCCGCGGCGGCCTCGTCTCCAGGGACGTCGACTGGGGCGGGTGGCAAT
TGGAGTAGCAGCAGCAACAACACTGACAACGATCCGCACCACCACCACGA
TCATTACCATCACCATCGACACCAGCATGAGCACCTCCAGTTGGAGTTGG
CGCGCCAGATAGAGATGCTGCGGGGAGGCAGTCAGTGGGAGTCGGACGAC
CTCACTTGCGAAATCTTTAAACGCGTCTACCGATAA
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protein sequence of NO08G02230.1

>NO08G02230.1-protein ID=NO08G02230.1-protein|Name=NO08G02230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=412bp
MQGEEESPHYVAAPGTNDSGGPKRTSSRDWGQHWLDLDRDYFRPVSTTDI
ENLRSQLRNVEEMIIEAEASSLFRPLGIASLNVVGQSACTKLQQQQQQRQ
QEQQQQEEVAREEERGLLPTSQEEAEENDASSVRLQPTIQLQPPCPPSDS
SASTSSCSISDKENKAKRGKWRRAAFAGEESVSSPEELQRHGEIDNKKKG
LTRTDSMVSIMEEDEDEDEDEEEETRSAFSREDEDDDDDDVEDVKDEVYP
NREEGTQDRSYADGADGRGGVVGGGGKGRGGVGRFGVEEEEEERGEDADF
GREIAYLAWRKGQLHDFLQGEVAYLLRCARLDRAAAAASSPGTSTGAGGN
WSSSSNNTDNDPHHHHDHYHHHRHQHEHLQLELARQIEMLRGGSQWESDD
LTCEIFKRVYR*
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mRNA from alignment at chr8:657034..658453-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02230.1 ID=NO08G02230.1|Name=NO08G02230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1420bp|location=Sequence derived from alignment at chr8:657034..658453- (Nannochloropsis oceanica)
ATGCAGGGGGAGGAGGAGAGTCCGCACTACGTGGCGGCACCCGGCACAAA
TGACAGCGGGGGGCCGAAGCGGACGTCCAGCAGGGACTGGGGACAGCATT
GGCTGGACTTGGACAGGGATTACTTTAGGCCTGTCTCGACCACCGACATT
GAAAATCTTCGATCACAGGTACGCCTGCGGGGTTGGGGGCGTGAGATGGG
TCTGCGGAAATGTGCTTGTGTAACTTATGGATGGGCCCTGACCGACTCCC
TTCCCTCCCTTCCCCACCACAGCTTCGGAACGTGGAAGAAATGATTATCG
AAGCGGAGGCCTCCTCTCTTTTCAGGCCGCTAGGTATCGCTTCATTAAAC
GTGGTGGGGCAGTCTGCATGCACCAAGCTCCAGCAGCAGCAGCAGCAGCG
GCAGCAGGAGCAGCAGCAGCAGGAGGAGGTAGCAAGAGAAGAGGAGCGGG
GCCTTCTTCCCACGTCCCAGGAGGAGGCGGAGGAGAACGATGCGAGCTCG
GTGCGGCTTCAACCGACCATCCAACTACAACCGCCATGCCCGCCCTCGGA
CAGCTCAGCATCCACGTCGTCCTGCTCAATCAGCGACAAGGAAAACAAGG
CCAAGAGGTGAGTTTGGAGAGAAAAAACGTCTATCGCTAAAAATGCGGAG
ACGCGCATCTTTATTATCTGTATCACCACGCTTACAGGGGAAAATGGCGG
CGGGCTGCTTTTGCTGGGGAAGAAAGTGTGTCTTCTCCAGAAGAGTTGCA
GCGCCATGGCGAGATCGACAATAAGAAGAAGGGTTTGACACGGACGGATT
CCATGGTGTCGATCATGGAGGAGGATGAGGACGAGGATGAGGACGAGGAG
GAAGAGACGCGTTCCGCCTTTTCACGGGAAGATGAAGATGACGATGATGA
CGATGTAGAGGATGTAAAGGACGAGGTTTATCCGAACAGGGAGGAAGGGA
CTCAAGATCGATCGTACGCAGACGGTGCAGATGGGCGAGGAGGGGTAGTT
GGAGGAGGGGGGAAAGGAAGAGGAGGGGTAGGAAGGTTTGGGGTGGAAGA
AGAAGAAGAAGAAAGAGGAGAAGATGCAGATTTTGGACGAGAGATAGCGT
ACTTGGCCTGGCGGAAAGGCCAGCTCCACGATTTTTTGCAGGGGGAAGTC
GCCTACCTCTTACGCTGCGCTCGTTTGGATCGCGCGGCCGCGGCGGCCTC
GTCTCCAGGGACGTCGACTGGGGCGGGTGGCAATTGGAGTAGCAGCAGCA
ACAACACTGACAACGATCCGCACCACCACCACGATCATTACCATCACCAT
CGACACCAGCATGAGCACCTCCAGTTGGAGTTGGCGCGCCAGATAGAGAT
GCTGCGGGGAGGCAGTCAGTGGGAGTCGGACGACCTCACTTGCGAAATCT
TTAAACGCGTCTACCGATAA
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Coding sequence (CDS) from alignment at chr8:657034..658453-

>NO08G02230.1 ID=NO08G02230.1|Name=NO08G02230.1|organism=Nannochloropsis oceanica|type=CDS|length=1236bp|location=Sequence derived from alignment at chr8:657034..658453- (Nannochloropsis oceanica)
ATGCAGGGGGAGGAGGAGAGTCCGCACTACGTGGCGGCACCCGGCACAAA
TGACAGCGGGGGGCCGAAGCGGACGTCCAGCAGGGACTGGGGACAGCATT
GGCTGGACTTGGACAGGGATTACTTTAGGCCTGTCTCGACCACCGACATT
GAAAATCTTCGATCACAGCTTCGGAACGTGGAAGAAATGATTATCGAAGC
GGAGGCCTCCTCTCTTTTCAGGCCGCTAGGTATCGCTTCATTAAACGTGG
TGGGGCAGTCTGCATGCACCAAGCTCCAGCAGCAGCAGCAGCAGCGGCAG
CAGGAGCAGCAGCAGCAGGAGGAGGTAGCAAGAGAAGAGGAGCGGGGCCT
TCTTCCCACGTCCCAGGAGGAGGCGGAGGAGAACGATGCGAGCTCGGTGC
GGCTTCAACCGACCATCCAACTACAACCGCCATGCCCGCCCTCGGACAGC
TCAGCATCCACGTCGTCCTGCTCAATCAGCGACAAGGAAAACAAGGCCAA
GAGGGGAAAATGGCGGCGGGCTGCTTTTGCTGGGGAAGAAAGTGTGTCTT
CTCCAGAAGAGTTGCAGCGCCATGGCGAGATCGACAATAAGAAGAAGGGT
TTGACACGGACGGATTCCATGGTGTCGATCATGGAGGAGGATGAGGACGA
GGATGAGGACGAGGAGGAAGAGACGCGTTCCGCCTTTTCACGGGAAGATG
AAGATGACGATGATGACGATGTAGAGGATGTAAAGGACGAGGTTTATCCG
AACAGGGAGGAAGGGACTCAAGATCGATCGTACGCAGACGGTGCAGATGG
GCGAGGAGGGGTAGTTGGAGGAGGGGGGAAAGGAAGAGGAGGGGTAGGAA
GGTTTGGGGTGGAAGAAGAAGAAGAAGAAAGAGGAGAAGATGCAGATTTT
GGACGAGAGATAGCGTACTTGGCCTGGCGGAAAGGCCAGCTCCACGATTT
TTTGCAGGGGGAAGTCGCCTACCTCTTACGCTGCGCTCGTTTGGATCGCG
CGGCCGCGGCGGCCTCGTCTCCAGGGACGTCGACTGGGGCGGGTGGCAAT
TGGAGTAGCAGCAGCAACAACACTGACAACGATCCGCACCACCACCACGA
TCATTACCATCACCATCGACACCAGCATGAGCACCTCCAGTTGGAGTTGG
CGCGCCAGATAGAGATGCTGCGGGGAGGCAGTCAGTGGGAGTCGGACGAC
CTCACTTGCGAAATCTTTAAACGCGTCTACCGATAA
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Synonyms
Publications