NO08G02060, NO08G02060 (gene) Nannochloropsis oceanica

Overview
NameNO08G02060
Unique NameNO08G02060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1581
Alignment locationchr8:611130..612710 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:611130..612710 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO08G02060 vs. NCBI_GenBank
Match: XP_005856013.1 (hypothetical protein NGA_2076900 [Nannochloropsis gaditana CCMP526] >EKU20350.1 hypothetical protein NGA_2076900 [Nannochloropsis gaditana CCMP526] >EWM26702.1 hypothetical protein Naga_100001g111 [Nannochloropsis gaditana])

HSP 1 Score: 547.4 bits (1409), Expect = 5.000e-152
Identity = 299/478 (62.55%), Postives = 371/478 (77.62%), Query Frame = 0
Query:   44 ENEEQNMTTLEYIRDNLEDLQEXXQEGVRGVNDRAARARKRALDLHERWSDAMDDAVDDVREYLGLEKPVLNRVEDRLELVLKRTDFARYV-MKGGVGLGMVFFGLHFSHLVVFMHTLRVTGLPVIQRAWWEFLEMYAVARQTIKKEYPNMAQTKKLLQAVHFEIRSTRKILHEAAEAAKDGTVTKAEAREAVRKAKINLRELNEKSWLLNQAFSSMHAMAAAVDFRRIKDLAGGIYTSALACFATASSSTLRGLSIGFDLASLISGHIDNAIRALTKRMHRLEVFRYLPKETQKLLGLTVSLVSVVKGLIVVHFVVPRLTLAVSSSALGALWITDTIMYVTDAGAGRTGKGPMNDNGLFLLSNLFWTAAGFAFQTKRAGEEMPRFFRILFYPVLCLEKFLHSLDEVLGSSRDKIEQLITKRKHSSLTQGECVAAGGVAGATLLQAAEAGAKLDEREGSYER-RGRGGFLGVITRFWQ 520
            E  E  MTT E  RD++E+  E  QEG+  V +RA + +++A  L E+++D +D+A  DVREYLGLEKP L ++EDR+  VL++T FAR V +KG VGL MV +G+HFSHLVVF+HTLRVTGLPV+QRAW EF++MY  AR+TIK+EYPNM  TKKLLQAVH+EI+STRK+LHE+AEAAKDG VT++EAREAVRKAK+NLRELNEKSW+LNQAFSSMHA+AAA+DF +IKDL  GIYTSALACFATASSSTLRGLSIGFDLASLIS HID+A++A+ +R+ RLEV +YLP+ETQKLLG+TVSLVSV+KGLIVVHFVVPRLTL +SSSALGALW+TD ++ V DAGA   G G +ND  L+LLSN FWTA G  +Q+ R G++MPR  ++L +P + LE  L SLD  LGSSR+KIE L+  +KH+  + G  + A   A    L   EA      +EG+  R R RGG L     FW+
Sbjct:   50 EETEGAMTTFELFRDSMEEFNEDFQEGIHLVRERALQVKEQAFKLQEKFTDIVDEATLDVREYLGLEKPYLEQLEDRMLNVLQKTAFARQVIVKGCVGLSMVLYGMHFSHLVVFIHTLRVTGLPVMQRAWNEFVDMYGTARRTIKREYPNMLHTKKLLQAVHYEIQSTRKLLHESAEAAKDGKVTESEAREAVRKAKLNLRELNEKSWILNQAFSSMHAVAAAIDFVKIKDLFSGIYTSALACFATASSSTLRGLSIGFDLASLISQHIDHAVQAVAERIPRLEVLQYLPRETQKLLGMTVSLVSVLKGLIVVHFVVPRLTLVISSSALGALWVTDMLVDVMDAGADGPGTGLLNDKCLYLLSNFFWTAVGCMYQSHREGQDMPRLIQVLLFPAVRLETLLCSLDNFLGSSREKIEYLV--KKHTPFS-GNAMEAQETAHTPSLAVQEA------KEGNTARERKRGGLL----HFWK 514          
BLAST of NO08G02060 vs. NCBI_GenBank
Match: EWM26662.1 (hypothetical protein Naga_100001g33 [Nannochloropsis gaditana])

HSP 1 Score: 189.5 bits (480), Expect = 2.600e-44
Identity = 104/321 (32.40%), Postives = 182/321 (56.70%), Query Frame = 0
Query:  130 FARYVMKGGVGLGMVFFGLHFSHLVVFMHTLRVTGLPVIQRAWWEFLEMYAVARQTIKKEYPNMAQTKKLLQAVHFEIRSTRKILHEAAEAAKDGTVTKAEAREAVRKAKINLRELNEKSWLLNQAFSSMHAMAAAVDFRRIKDLAGGIYTSALACFATASSSTLRGLSIGFDLASLISGHIDNAIRALTKRMHRLEVFRYLPKETQKLLGLTVSLVSVVKGLIVVHFVVPRLTLAVSSSALGALWITDTIMYVTDAG-AGRTGKGPMNDNGLFLLSNLFWTAAGFAFQTKRAGEEMPRFFRILFYPVLCLEKFLHSLDEV 450
            F     K   G  M  FG H++   V  HT+RVTG P   +A  E    Y+ AR+ +K E   + +  +L +AV +E++S   ++ E+ +  +DG +++ EA E +R+A+I+ + L  ++W LNQA  S+ A+ AA+D  R+++   G+YT ALACFA++SS T+  LS+ FDL  +++ ++      L  R H  E+ R LP ET++ + L+  ++  ++GL++V+ V+P+++L +SS+ALGA W+TD I  + D       G  PM ++  + +  +  T  G+  Q      ++P     +  P+   EK L+ L+ +
Sbjct:  145 FVSTAAKALAGGTMCLFGAHYARCAVVFHTMRVTGWPAFHKAVQELFRSYSAAREVVKSEVSKVVRPGELFRAVSYELKSVHFLIKESQKKLEDGYLSRMEAMEIIRRAQIDKKRLEYEAWCLNQALDSVAALGAAIDLTRLREAGKGLYTGALACFASSSSMTVCKLSLAFDLGGILANNLSCVCATLMSRWHSKELARILPPETRRFIKLSFQIMGAIQGLLIVNTVLPKVSLRISSAALGAAWLTDAITEICDPWIQAHDGWNPMANHLPYAVLQVGLTIGGYYVQKTVYPGKIPLIVERVLSPLAFFEKRLNYLNSM 465          
The following BLAST results are available for this feature:
BLAST of NO08G02060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005856013.15.000e-15262.55hypothetical protein NGA_2076900 [Nannochloropsis ... [more]
EWM26662.12.600e-4432.40hypothetical protein Naga_100001g33 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008830NSK008830Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02060.1NO08G02060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582495gene_3533Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g111gene3855Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02060.1NO08G02060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02060 ID=NO08G02060|Name=NO08G02060|organism=Nannochloropsis oceanica|type=gene|length=1581bp
ATGGTGTGGGTAAGTCGGCGGCGCCTGACCCTGGGCGTTGCTGTCTATAT
CTACATGGTTTACTGCTTTCTATCTCCAGGAGTCGTGGCGGGCGGCTTCT
TGCAGCAGGAGATGGGGAAAGTCAAAGAGGAAAACGAGGAGCAAAACATG
ACCACGCTCGAGTACATCCGCGACAACCTAGAAGACTTGCAAGAGGACAT
TCAAGAAGGTGTGCGAGGTGTGAATGATCGAGCGGCGCGCGCCAGAAAGC
GGGCATTGGATTTGCATGAACGATGGAGCGATGCAATGGACGATGCAGTG
GACGACGTACGCGAATACTTGGGCCTGGAAAAACCTGTTCTGAATCGAGT
GGAAGATCGCCTGGAGCTGGTGCTGAAGAGGACAGATTTCGCTCGATACG
TGATGAAAGGCGGGGTCGGGCTGGGCATGGTCTTCTTCGGACTGCACTTC
TCCCACCTAGTCGTTTTCATGCATACCCTGCGCGTGACGGGCCTCCCCGT
CATCCAACGTGCTTGGTGGGAGTTCCTTGAGATGTACGCTGTGGCCCGCC
AAACGATCAAAAAGGAATATCCCAATATGGCACAAACTAAGAAGTTGCTT
CAAGCTGTGCATTTTGAGATTCGGTCGACCCGCAAAATTCTCCACGAGGC
CGCCGAGGCTGCCAAGGACGGCACGGTCACAAAGGCCGAAGCCCGCGAAG
CCGTGCGTAAGGCTAAAATCAACTTACGGGAGCTTAATGAGAAGTCATGG
TTGTTGAACCAGGCATTTTCTTCCATGCACGCCATGGCGGCGGCAGTTGA
TTTTCGGAGAATTAAGGACTTGGCGGGTGGGATTTATACTTCGGCCTTGG
CATGTTTTGCCACTGCGTCCTCGTCTACCCTGCGAGGCCTCTCTATTGGT
TTTGACCTTGCTTCATTGATTTCTGGACATATCGACAATGCCATTCGCGC
CCTCACCAAACGCATGCATCGATTGGAAGTATTTCGATACCTGCCCAAGG
AGACACAGAAGCTGCTCGGGCTGACAGTGTCCCTCGTTTCGGTTGTCAAA
GGACTGATTGTCGTTCATTTTGTGGTGCCCCGCCTCACGCTCGCCGTATC
TTCCTCGGCCTTAGGCGCTCTGTGGATAACCGACACGATAATGTATGTGA
CAGATGCCGGAGCGGGAAGGACAGGCAAGGGGCCCATGAACGACAACGGT
CTATTCTTGCTCTCCAATTTATTTTGGACTGCGGCTGGCTTTGCCTTTCA
AACCAAACGCGCTGGGGAGGAAATGCCTCGCTTCTTCCGGATCCTATTCT
ATCCGGTCTTGTGTCTGGAGAAGTTTTTACATTCCTTGGACGAGGTATTG
GGCTCGAGTCGTGATAAGATTGAACAACTGATCACAAAACGCAAACATTC
TTCGTTAACCCAAGGGGAATGTGTAGCGGCGGGAGGCGTGGCAGGGGCGA
CACTCCTGCAGGCCGCTGAAGCAGGTGCGAAATTGGATGAGAGGGAGGGA
TCGTACGAGAGGAGAGGAAGAGGGGGCTTCTTGGGCGTAATTACGCGTTT
TTGGCAGAAACCACCGTCACGGCAGGAGTAA
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protein sequence of NO08G02060.1

>NO08G02060.1-protein ID=NO08G02060.1-protein|Name=NO08G02060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=527bp
MVWVSRRRLTLGVAVYIYMVYCFLSPGVVAGGFLQQEMGKVKEENEEQNM
TTLEYIRDNLEDLQEDIQEGVRGVNDRAARARKRALDLHERWSDAMDDAV
DDVREYLGLEKPVLNRVEDRLELVLKRTDFARYVMKGGVGLGMVFFGLHF
SHLVVFMHTLRVTGLPVIQRAWWEFLEMYAVARQTIKKEYPNMAQTKKLL
QAVHFEIRSTRKILHEAAEAAKDGTVTKAEAREAVRKAKINLRELNEKSW
LLNQAFSSMHAMAAAVDFRRIKDLAGGIYTSALACFATASSSTLRGLSIG
FDLASLISGHIDNAIRALTKRMHRLEVFRYLPKETQKLLGLTVSLVSVVK
GLIVVHFVVPRLTLAVSSSALGALWITDTIMYVTDAGAGRTGKGPMNDNG
LFLLSNLFWTAAGFAFQTKRAGEEMPRFFRILFYPVLCLEKFLHSLDEVL
GSSRDKIEQLITKRKHSSLTQGECVAAGGVAGATLLQAAEAGAKLDEREG
SYERRGRGGFLGVITRFWQKPPSRQE*
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Synonyms
Publications