NO08G02060.1, NO08G02060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02060.1
Unique NameNO08G02060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1581
Alignment locationchr8:611130..612710 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:611130..612710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G02060.1 vs.
Match: XP_005856013.1 (hypothetical protein NGA_2076900 [Nannochloropsis gaditana CCMP526]; EKU20350.1 hypothetical protein NGA_2076900 [Nannochloropsis gaditana CCMP526]; EWM26702.1 hypothetical protein Naga_100001g111 [Nannochloropsis gaditana])

HSP 1 Score: 550.8 bits (1418), Expect = 4.500e-153
Identity = 300/478 (62.76%), Postives = 372/478 (77.82%), Query Frame = 0 
Query:   44 ENEEQNMTTLEYIRDNLEDLQEDIQEGVRGVNDRAARARKRALDLHERWSDAMDDAVDDVREYLGLEKPVLNRVEDRLELVLKRTDFARYVM-KGGVGLGMVFFGLHFSHLVVFMHTLRVTGLPVIQRAWWEFLEMYAVARQTIKKEYPNMAQTKKLLQAVHFEIRSTRKILHEAAEAAKDGTVTKAEAREAVRKAKINLRELNEKSWLLNQAFSSMHAMAAAVDFRRIKDLAGGIYTSALACFATASSSTLRGLSIGFDLASLISGHIDNAIRALTKRMHRLEVFRYLPKETQKLLGLTVSLVSVVKGLIVVHFVVPRLTLAVSSSALGALWITDTIMYVTDAGAGRTGKGPMNDNGLFLLSNLFWTAAGFAFQTKRAGEEMPRFFRILFYPVLCLEKFLHSLDEVLGSSRDKIEQLITKRKHSSLTQGECVAAGGVAGATLLQAAEAGAKLDEREGSYER-RGRGGFLGVITRFWQ 520
            E  E  MTT E  RD++E+  ED QEG+  V +RA + +++A  L E+++D +D+A  DVREYLGLEKP L ++EDR+  VL++T FAR V+ KG VGL MV +G+HFSHLVVF+HTLRVTGLPV+QRAW EF++MY  AR+TIK+EYPNM  TKKLLQAVH+EI+STRK+LHE+AEAAKDG VT++EAREAVRKAK+NLRELNEKSW+LNQAFSSMHA+AAA+DF +IKDL  GIYTSALACFATASSSTLRGLSIGFDLASLIS HID+A++A+ +R+ RLEV +YLP+ETQKLLG+TVSLVSV+KGLIVVHFVVPRLTL +SSSALGALW+TD ++ V DAGA   G G +ND  L+LLSN FWTA G  +Q+ R G++MPR  ++L +P + LE  L SLD  LGSSR+KIE L+  +KH+  + G  + A   A    L   EA      +EG+  R R RGG L     FW+
Sbjct:   50 EETEGAMTTFELFRDSMEEFNEDFQEGIHLVRERALQVKEQAFKLQEKFTDIVDEATLDVREYLGLEKPYLEQLEDRMLNVLQKTAFARQVIVKGCVGLSMVLYGMHFSHLVVFIHTLRVTGLPVMQRAWNEFVDMYGTARRTIKREYPNMLHTKKLLQAVHYEIQSTRKLLHESAEAAKDGKVTESEAREAVRKAKLNLRELNEKSWILNQAFSSMHAVAAAIDFVKIKDLFSGIYTSALACFATASSSTLRGLSIGFDLASLISQHIDHAVQAVAERIPRLEVLQYLPRETQKLLGMTVSLVSVLKGLIVVHFVVPRLTLVISSSALGALWVTDMLVDVMDAGADGPGTGLLNDKCLYLLSNFFWTAVGCMYQSHREGQDMPRLIQVLLFPAVRLETLLCSLDNFLGSSREKIEYLV--KKHTPFS-GNAMEAQETAHTPSLAVQEA------KEGNTARERKRGGLL----HFWK 514
The following BLAST results are available for this feature:
BLAST of NO08G02060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856013.14.500e-15362.76hypothetical protein NGA_2076900 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02060NO08G02060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02060.1NO08G02060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02060.1.cds1NO08G02060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02060.1 ID=NO08G02060.1|Name=NO08G02060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1581bp
ATGGTGTGGGTAAGTCGGCGGCGCCTGACCCTGGGCGTTGCTGTCTATAT
CTACATGGTTTACTGCTTTCTATCTCCAGGAGTCGTGGCGGGCGGCTTCT
TGCAGCAGGAGATGGGGAAAGTCAAAGAGGAAAACGAGGAGCAAAACATG
ACCACGCTCGAGTACATCCGCGACAACCTAGAAGACTTGCAAGAGGACAT
TCAAGAAGGTGTGCGAGGTGTGAATGATCGAGCGGCGCGCGCCAGAAAGC
GGGCATTGGATTTGCATGAACGATGGAGCGATGCAATGGACGATGCAGTG
GACGACGTACGCGAATACTTGGGCCTGGAAAAACCTGTTCTGAATCGAGT
GGAAGATCGCCTGGAGCTGGTGCTGAAGAGGACAGATTTCGCTCGATACG
TGATGAAAGGCGGGGTCGGGCTGGGCATGGTCTTCTTCGGACTGCACTTC
TCCCACCTAGTCGTTTTCATGCATACCCTGCGCGTGACGGGCCTCCCCGT
CATCCAACGTGCTTGGTGGGAGTTCCTTGAGATGTACGCTGTGGCCCGCC
AAACGATCAAAAAGGAATATCCCAATATGGCACAAACTAAGAAGTTGCTT
CAAGCTGTGCATTTTGAGATTCGGTCGACCCGCAAAATTCTCCACGAGGC
CGCCGAGGCTGCCAAGGACGGCACGGTCACAAAGGCCGAAGCCCGCGAAG
CCGTGCGTAAGGCTAAAATCAACTTACGGGAGCTTAATGAGAAGTCATGG
TTGTTGAACCAGGCATTTTCTTCCATGCACGCCATGGCGGCGGCAGTTGA
TTTTCGGAGAATTAAGGACTTGGCGGGTGGGATTTATACTTCGGCCTTGG
CATGTTTTGCCACTGCGTCCTCGTCTACCCTGCGAGGCCTCTCTATTGGT
TTTGACCTTGCTTCATTGATTTCTGGACATATCGACAATGCCATTCGCGC
CCTCACCAAACGCATGCATCGATTGGAAGTATTTCGATACCTGCCCAAGG
AGACACAGAAGCTGCTCGGGCTGACAGTGTCCCTCGTTTCGGTTGTCAAA
GGACTGATTGTCGTTCATTTTGTGGTGCCCCGCCTCACGCTCGCCGTATC
TTCCTCGGCCTTAGGCGCTCTGTGGATAACCGACACGATAATGTATGTGA
CAGATGCCGGAGCGGGAAGGACAGGCAAGGGGCCCATGAACGACAACGGT
CTATTCTTGCTCTCCAATTTATTTTGGACTGCGGCTGGCTTTGCCTTTCA
AACCAAACGCGCTGGGGAGGAAATGCCTCGCTTCTTCCGGATCCTATTCT
ATCCGGTCTTGTGTCTGGAGAAGTTTTTACATTCCTTGGACGAGGTATTG
GGCTCGAGTCGTGATAAGATTGAACAACTGATCACAAAACGCAAACATTC
TTCGTTAACCCAAGGGGAATGTGTAGCGGCGGGAGGCGTGGCAGGGGCGA
CACTCCTGCAGGCCGCTGAAGCAGGTGCGAAATTGGATGAGAGGGAGGGA
TCGTACGAGAGGAGAGGAAGAGGGGGCTTCTTGGGCGTAATTACGCGTTT
TTGGCAGAAACCACCGTCACGGCAGGAGTAA
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protein sequence of NO08G02060.1

>NO08G02060.1-protein ID=NO08G02060.1-protein|Name=NO08G02060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=527bp
MVWVSRRRLTLGVAVYIYMVYCFLSPGVVAGGFLQQEMGKVKEENEEQNM
TTLEYIRDNLEDLQEDIQEGVRGVNDRAARARKRALDLHERWSDAMDDAV
DDVREYLGLEKPVLNRVEDRLELVLKRTDFARYVMKGGVGLGMVFFGLHF
SHLVVFMHTLRVTGLPVIQRAWWEFLEMYAVARQTIKKEYPNMAQTKKLL
QAVHFEIRSTRKILHEAAEAAKDGTVTKAEAREAVRKAKINLRELNEKSW
LLNQAFSSMHAMAAAVDFRRIKDLAGGIYTSALACFATASSSTLRGLSIG
FDLASLISGHIDNAIRALTKRMHRLEVFRYLPKETQKLLGLTVSLVSVVK
GLIVVHFVVPRLTLAVSSSALGALWITDTIMYVTDAGAGRTGKGPMNDNG
LFLLSNLFWTAAGFAFQTKRAGEEMPRFFRILFYPVLCLEKFLHSLDEVL
GSSRDKIEQLITKRKHSSLTQGECVAAGGVAGATLLQAAEAGAKLDEREG
SYERRGRGGFLGVITRFWQKPPSRQE*
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mRNA from alignment at chr8:611130..612710+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02060.1 ID=NO08G02060.1|Name=NO08G02060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1581bp|location=Sequence derived from alignment at chr8:611130..612710+ (Nannochloropsis oceanica)
ATGGTGTGGGTAAGTCGGCGGCGCCTGACCCTGGGCGTTGCTGTCTATAT
CTACATGGTTTACTGCTTTCTATCTCCAGGAGTCGTGGCGGGCGGCTTCT
TGCAGCAGGAGATGGGGAAAGTCAAAGAGGAAAACGAGGAGCAAAACATG
ACCACGCTCGAGTACATCCGCGACAACCTAGAAGACTTGCAAGAGGACAT
TCAAGAAGGTGTGCGAGGTGTGAATGATCGAGCGGCGCGCGCCAGAAAGC
GGGCATTGGATTTGCATGAACGATGGAGCGATGCAATGGACGATGCAGTG
GACGACGTACGCGAATACTTGGGCCTGGAAAAACCTGTTCTGAATCGAGT
GGAAGATCGCCTGGAGCTGGTGCTGAAGAGGACAGATTTCGCTCGATACG
TGATGAAAGGCGGGGTCGGGCTGGGCATGGTCTTCTTCGGACTGCACTTC
TCCCACCTAGTCGTTTTCATGCATACCCTGCGCGTGACGGGCCTCCCCGT
CATCCAACGTGCTTGGTGGGAGTTCCTTGAGATGTACGCTGTGGCCCGCC
AAACGATCAAAAAGGAATATCCCAATATGGCACAAACTAAGAAGTTGCTT
CAAGCTGTGCATTTTGAGATTCGGTCGACCCGCAAAATTCTCCACGAGGC
CGCCGAGGCTGCCAAGGACGGCACGGTCACAAAGGCCGAAGCCCGCGAAG
CCGTGCGTAAGGCTAAAATCAACTTACGGGAGCTTAATGAGAAGTCATGG
TTGTTGAACCAGGCATTTTCTTCCATGCACGCCATGGCGGCGGCAGTTGA
TTTTCGGAGAATTAAGGACTTGGCGGGTGGGATTTATACTTCGGCCTTGG
CATGTTTTGCCACTGCGTCCTCGTCTACCCTGCGAGGCCTCTCTATTGGT
TTTGACCTTGCTTCATTGATTTCTGGACATATCGACAATGCCATTCGCGC
CCTCACCAAACGCATGCATCGATTGGAAGTATTTCGATACCTGCCCAAGG
AGACACAGAAGCTGCTCGGGCTGACAGTGTCCCTCGTTTCGGTTGTCAAA
GGACTGATTGTCGTTCATTTTGTGGTGCCCCGCCTCACGCTCGCCGTATC
TTCCTCGGCCTTAGGCGCTCTGTGGATAACCGACACGATAATGTATGTGA
CAGATGCCGGAGCGGGAAGGACAGGCAAGGGGCCCATGAACGACAACGGT
CTATTCTTGCTCTCCAATTTATTTTGGACTGCGGCTGGCTTTGCCTTTCA
AACCAAACGCGCTGGGGAGGAAATGCCTCGCTTCTTCCGGATCCTATTCT
ATCCGGTCTTGTGTCTGGAGAAGTTTTTACATTCCTTGGACGAGGTATTG
GGCTCGAGTCGTGATAAGATTGAACAACTGATCACAAAACGCAAACATTC
TTCGTTAACCCAAGGGGAATGTGTAGCGGCGGGAGGCGTGGCAGGGGCGA
CACTCCTGCAGGCCGCTGAAGCAGGTGCGAAATTGGATGAGAGGGAGGGA
TCGTACGAGAGGAGAGGAAGAGGGGGCTTCTTGGGCGTAATTACGCGTTT
TTGGCAGAAACCACCGTCACGGCAGGAGTAA
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Coding sequence (CDS) from alignment at chr8:611130..612710+

>NO08G02060.1 ID=NO08G02060.1|Name=NO08G02060.1|organism=Nannochloropsis oceanica|type=CDS|length=1581bp|location=Sequence derived from alignment at chr8:611130..612710+ (Nannochloropsis oceanica)
ATGGTGTGGGTAAGTCGGCGGCGCCTGACCCTGGGCGTTGCTGTCTATAT
CTACATGGTTTACTGCTTTCTATCTCCAGGAGTCGTGGCGGGCGGCTTCT
TGCAGCAGGAGATGGGGAAAGTCAAAGAGGAAAACGAGGAGCAAAACATG
ACCACGCTCGAGTACATCCGCGACAACCTAGAAGACTTGCAAGAGGACAT
TCAAGAAGGTGTGCGAGGTGTGAATGATCGAGCGGCGCGCGCCAGAAAGC
GGGCATTGGATTTGCATGAACGATGGAGCGATGCAATGGACGATGCAGTG
GACGACGTACGCGAATACTTGGGCCTGGAAAAACCTGTTCTGAATCGAGT
GGAAGATCGCCTGGAGCTGGTGCTGAAGAGGACAGATTTCGCTCGATACG
TGATGAAAGGCGGGGTCGGGCTGGGCATGGTCTTCTTCGGACTGCACTTC
TCCCACCTAGTCGTTTTCATGCATACCCTGCGCGTGACGGGCCTCCCCGT
CATCCAACGTGCTTGGTGGGAGTTCCTTGAGATGTACGCTGTGGCCCGCC
AAACGATCAAAAAGGAATATCCCAATATGGCACAAACTAAGAAGTTGCTT
CAAGCTGTGCATTTTGAGATTCGGTCGACCCGCAAAATTCTCCACGAGGC
CGCCGAGGCTGCCAAGGACGGCACGGTCACAAAGGCCGAAGCCCGCGAAG
CCGTGCGTAAGGCTAAAATCAACTTACGGGAGCTTAATGAGAAGTCATGG
TTGTTGAACCAGGCATTTTCTTCCATGCACGCCATGGCGGCGGCAGTTGA
TTTTCGGAGAATTAAGGACTTGGCGGGTGGGATTTATACTTCGGCCTTGG
CATGTTTTGCCACTGCGTCCTCGTCTACCCTGCGAGGCCTCTCTATTGGT
TTTGACCTTGCTTCATTGATTTCTGGACATATCGACAATGCCATTCGCGC
CCTCACCAAACGCATGCATCGATTGGAAGTATTTCGATACCTGCCCAAGG
AGACACAGAAGCTGCTCGGGCTGACAGTGTCCCTCGTTTCGGTTGTCAAA
GGACTGATTGTCGTTCATTTTGTGGTGCCCCGCCTCACGCTCGCCGTATC
TTCCTCGGCCTTAGGCGCTCTGTGGATAACCGACACGATAATGTATGTGA
CAGATGCCGGAGCGGGAAGGACAGGCAAGGGGCCCATGAACGACAACGGT
CTATTCTTGCTCTCCAATTTATTTTGGACTGCGGCTGGCTTTGCCTTTCA
AACCAAACGCGCTGGGGAGGAAATGCCTCGCTTCTTCCGGATCCTATTCT
ATCCGGTCTTGTGTCTGGAGAAGTTTTTACATTCCTTGGACGAGGTATTG
GGCTCGAGTCGTGATAAGATTGAACAACTGATCACAAAACGCAAACATTC
TTCGTTAACCCAAGGGGAATGTGTAGCGGCGGGAGGCGTGGCAGGGGCGA
CACTCCTGCAGGCCGCTGAAGCAGGTGCGAAATTGGATGAGAGGGAGGGA
TCGTACGAGAGGAGAGGAAGAGGGGGCTTCTTGGGCGTAATTACGCGTTT
TTGGCAGAAACCACCGTCACGGCAGGAGTAA
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Synonyms
Publications