NO08G01980, NO08G01980 (gene) Nannochloropsis oceanica

Overview
NameNO08G01980
Unique NameNO08G01980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length462
Alignment locationchr8:597388..597849 -

Link to JBrowse

Properties
Property NameValue
DescriptionZinc finger bed domain-containing 1-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:597388..597849 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Homology
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BLAST of NO08G01980 vs. NCBI_GenBank
Match: XP_005852719.1 (zinc finger bed domain-containing 1-like protein, partial [Nannochloropsis gaditana CCMP526] >EKU23115.1 zinc finger bed domain-containing 1-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 66.6 bits (161), Expect = 7.600e-8
Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 0 
Query:    1 MELWWKVPENCPALAIVVIYYLCIPASSSALKRLLSQTGLIQSKLRNRTIAKLMYLHPRQLERQSLPSMALGEDGWEES 80
            ++LWW++ E+CPAL IV ++YL IPASSSA++RL SQTG I+S+LRNR            ++ Q+L  +      WE S
Sbjct:  172 LDLWWELHEDCPALIIVDMHYLAIPASSSAVERLFSQTGQIKSRLRNR------------MQPQTLDQLIFTRVNWEGS 238
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BLAST of NO08G01980 vs. NCBI_GenBank
Match: XP_005852366.1 (zinc finger bed domain-containing 1-like protein [Nannochloropsis gaditana CCMP526] >EKU23461.1 zinc finger bed domain-containing 1-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 66.6 bits (161), Expect = 7.600e-8
Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 0 
Query:    1 MELWWKVPENCPALAIVVIYYLCIPASSSALKRLLSQTGLIQSKLRNRTIAKLMYLHPRQLERQSLPSMALGEDGWEES 80
            ++LWW++ E+CPAL IV ++YL IPASSSA++RL SQTG I+S+LRNR            ++ Q+L  +      WE S
Sbjct:   66 LDLWWELHEDCPALIIVDMHYLAIPASSSAVERLFSQTGQIKSRLRNR------------MQPQTLDQLIFTRVNWEGS 132
The following BLAST results are available for this feature:
BLAST of NO08G01980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005852719.17.600e-845.57zinc finger bed domain-containing 1-like protein, ... [more]
XP_005852366.17.600e-845.57zinc finger bed domain-containing 1-like protein [... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G01980.1NO08G01980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669488gene_3528Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G01980.1NO08G01980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G01980 ID=NO08G01980|Name=NO08G01980|organism=Nannochloropsis oceanica|type=gene|length=462bp
ATGGAGTTGTGGTGGAAAGTTCCTGAGAACTGTCCTGCCCTCGCCATCGT
GGTCATATACTATCTCTGCATTCCCGCCTCATCGTCTGCTTTGAAGCGGT
TGTTATCACAAACGGGGCTGATCCAGTCGAAGCTGCGGAATCGGACGATC
GCGAAACTCATGTATCTTCACCCGCGCCAACTGGAACGACAGTCTCTGCC
AAGTATGGCTCTAGGAGAAGACGGCTGGGAGGAGAGCAAGGATGGTAAGG
AGGAGGAAGAGAACGAGGATGAGATGATACGGTGGGAAGAGATGGAGGAA
GGAACTGCGGGGAAGTTCGAAGTTTTTGGGAAGAATAATGAAGTCGCGAA
GACATCATCGCCGTCTGTCGGCGAGGTAGCTCATGCGGCGTCAATATTGC
AATCCTATGCAGAGCCAGCTCCTTGCCACCACCATGCAAACGACAGGACA
AGGAAGGTGTAG
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protein sequence of NO08G01980.1

>NO08G01980.1-protein ID=NO08G01980.1-protein|Name=NO08G01980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MELWWKVPENCPALAIVVIYYLCIPASSSALKRLLSQTGLIQSKLRNRTI
AKLMYLHPRQLERQSLPSMALGEDGWEESKDGKEEEENEDEMIRWEEMEE
GTAGKFEVFGKNNEVAKTSSPSVGEVAHAASILQSYAEPAPCHHHANDRT
RKV*
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Synonyms
Publications