NO08G01980.1, NO08G01980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01980.1
Unique NameNO08G01980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length462
Alignment locationchr8:597388..597849 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:597388..597849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G01980.1 vs.
Match: XP_005852366.1 (zinc finger bed domain-containing 1-like protein [Nannochloropsis gaditana CCMP526]; EKU23461.1 zinc finger bed domain-containing 1-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 66.6 bits (161), Expect = 7.600e-8
Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 0 
Query:    1 MELWWKVPENCPALAIVVIYYLCIPASSSALKRLLSQTGLIQSKLRNRTIAKLMYLHPRQLERQSLPSMALGEDGWEES 80
            ++LWW++ E+CPAL IV ++YL IPASSSA++RL SQTG I+S+LRNR            ++ Q+L  +      WE S
Sbjct:   66 LDLWWELHEDCPALIIVDMHYLAIPASSSAVERLFSQTGQIKSRLRNR------------MQPQTLDQLIFTRVNWEGS 132
The following BLAST results are available for this feature:
BLAST of NO08G01980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852366.17.600e-845.57zinc finger bed domain-containing 1-like protein [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01980NO08G01980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01980.1NO08G01980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01980.1.cds1NO08G01980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01980.1 ID=NO08G01980.1|Name=NO08G01980.1|organism=Nannochloropsis oceanica|type=mRNA|length=462bp
ATGGAGTTGTGGTGGAAAGTTCCTGAGAACTGTCCTGCCCTCGCCATCGT
GGTCATATACTATCTCTGCATTCCCGCCTCATCGTCTGCTTTGAAGCGGT
TGTTATCACAAACGGGGCTGATCCAGTCGAAGCTGCGGAATCGGACGATC
GCGAAACTCATGTATCTTCACCCGCGCCAACTGGAACGACAGTCTCTGCC
AAGTATGGCTCTAGGAGAAGACGGCTGGGAGGAGAGCAAGGATGGTAAGG
AGGAGGAAGAGAACGAGGATGAGATGATACGGTGGGAAGAGATGGAGGAA
GGAACTGCGGGGAAGTTCGAAGTTTTTGGGAAGAATAATGAAGTCGCGAA
GACATCATCGCCGTCTGTCGGCGAGGTAGCTCATGCGGCGTCAATATTGC
AATCCTATGCAGAGCCAGCTCCTTGCCACCACCATGCAAACGACAGGACA
AGGAAGGTGTAG
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protein sequence of NO08G01980.1

>NO08G01980.1-protein ID=NO08G01980.1-protein|Name=NO08G01980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MELWWKVPENCPALAIVVIYYLCIPASSSALKRLLSQTGLIQSKLRNRTI
AKLMYLHPRQLERQSLPSMALGEDGWEESKDGKEEEENEDEMIRWEEMEE
GTAGKFEVFGKNNEVAKTSSPSVGEVAHAASILQSYAEPAPCHHHANDRT
RKV*
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mRNA from alignment at chr8:597388..597849-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01980.1 ID=NO08G01980.1|Name=NO08G01980.1|organism=Nannochloropsis oceanica|type=mRNA|length=462bp|location=Sequence derived from alignment at chr8:597388..597849- (Nannochloropsis oceanica)
ATGGAGTTGTGGTGGAAAGTTCCTGAGAACTGTCCTGCCCTCGCCATCGT
GGTCATATACTATCTCTGCATTCCCGCCTCATCGTCTGCTTTGAAGCGGT
TGTTATCACAAACGGGGCTGATCCAGTCGAAGCTGCGGAATCGGACGATC
GCGAAACTCATGTATCTTCACCCGCGCCAACTGGAACGACAGTCTCTGCC
AAGTATGGCTCTAGGAGAAGACGGCTGGGAGGAGAGCAAGGATGGTAAGG
AGGAGGAAGAGAACGAGGATGAGATGATACGGTGGGAAGAGATGGAGGAA
GGAACTGCGGGGAAGTTCGAAGTTTTTGGGAAGAATAATGAAGTCGCGAA
GACATCATCGCCGTCTGTCGGCGAGGTAGCTCATGCGGCGTCAATATTGC
AATCCTATGCAGAGCCAGCTCCTTGCCACCACCATGCAAACGACAGGACA
AGGAAGGTGTAG
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Coding sequence (CDS) from alignment at chr8:597388..597849-

>NO08G01980.1 ID=NO08G01980.1|Name=NO08G01980.1|organism=Nannochloropsis oceanica|type=CDS|length=462bp|location=Sequence derived from alignment at chr8:597388..597849- (Nannochloropsis oceanica)
ATGGAGTTGTGGTGGAAAGTTCCTGAGAACTGTCCTGCCCTCGCCATCGT
GGTCATATACTATCTCTGCATTCCCGCCTCATCGTCTGCTTTGAAGCGGT
TGTTATCACAAACGGGGCTGATCCAGTCGAAGCTGCGGAATCGGACGATC
GCGAAACTCATGTATCTTCACCCGCGCCAACTGGAACGACAGTCTCTGCC
AAGTATGGCTCTAGGAGAAGACGGCTGGGAGGAGAGCAAGGATGGTAAGG
AGGAGGAAGAGAACGAGGATGAGATGATACGGTGGGAAGAGATGGAGGAA
GGAACTGCGGGGAAGTTCGAAGTTTTTGGGAAGAATAATGAAGTCGCGAA
GACATCATCGCCGTCTGTCGGCGAGGTAGCTCATGCGGCGTCAATATTGC
AATCCTATGCAGAGCCAGCTCCTTGCCACCACCATGCAAACGACAGGACA
AGGAAGGTGTAG
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Synonyms
Publications