NO08G01890, NO08G01890 (gene) Nannochloropsis oceanica

Overview
NameNO08G01890
Unique NameNO08G01890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1182
Alignment locationchr8:573047..574228 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:573047..574228 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO08G01890 vs. NCBI_GenBank
Match: EWM26716.1 (hypothetical protein Naga_100001g94 [Nannochloropsis gaditana])

HSP 1 Score: 237.3 bits (604), Expect = 8.300e-59
Identity = 148/229 (64.63%), Postives = 168/229 (73.36%), Query Frame = 0 
Query:    1 MHRSHQNIVAKIQAFSPTLLAINCLVCLSVAFIPTLNTILDVSWSHDPASLTXXXXXXXXXXXXXXXXXXXXLRAAPLAEAPEGIHQSPDALLSEMLGRPVARGAGIISGHVLSPSRTVNXXXXXXXXXXXXXXXXXXXRYVPRLFQDPSCLP--GGVNEELLTRLQAIRDWYEIGSACILPGMALFLTLLTASLQFVGHESPFVPLFFLLTFFVYSVEHRMLRPRAAK 228
            +HRSHQNIVAKI  F+  LLAIN LVCLSVAFIPTL+TILD SW H PASLT     XXXXXXXXXXXXXXXL+AAPLAEAP+GI++S + LLSEMLGRP+A G GII G++L+ S   +                   R  PRLFQ+PSCL    G++  LL RLQAIRD YEIGSA ILP MA FLTLLTASLQF G  SP+ P  FLLTFFVY+ EHR+LRPRAA+
Sbjct:  248 LHRSHQNIVAKISVFNERLLAINSLVCLSVAFIPTLSTILDPSWGHHPASLTTGAAFXXXXXXXXXXXXXXXLQAAPLAEAPDGINESAETLLSEMLGRPIACGTGIIPGNILA-SPADSPRSSQEIEKKDDVEDMLMPRRAPRLFQEPSCLAQGRGIDSNLLRRLQAIRDEYEIGSASILPVMAFFLTLLTASLQFAGETSPYTPAAFLLTFFVYTAEHRILRPRAAR 475
[Close]
BLAST of NO08G01890 vs. NCBI_GenBank
Match: EWM26717.1 (hypothetical protein Naga_100001g94 [Nannochloropsis gaditana])

HSP 1 Score: 237.3 bits (604), Expect = 8.300e-59
Identity = 148/229 (64.63%), Postives = 168/229 (73.36%), Query Frame = 0 
Query:    1 MHRSHQNIVAKIQAFSPTLLAINCLVCLSVAFIPTLNTILDVSWSHDPASLTXXXXXXXXXXXXXXXXXXXXLRAAPLAEAPEGIHQSPDALLSEMLGRPVARGAGIISGHVLSPSRTVNXXXXXXXXXXXXXXXXXXXRYVPRLFQDPSCLP--GGVNEELLTRLQAIRDWYEIGSACILPGMALFLTLLTASLQFVGHESPFVPLFFLLTFFVYSVEHRMLRPRAAK 228
            +HRSHQNIVAKI  F+  LLAIN LVCLSVAFIPTL+TILD SW H PASLT     XXXXXXXXXXXXXXXL+AAPLAEAP+GI++S + LLSEMLGRP+A G GII G++L+ S   +                   R  PRLFQ+PSCL    G++  LL RLQAIRD YEIGSA ILP MA FLTLLTASLQF G  SP+ P  FLLTFFVY+ EHR+LRPRAA+
Sbjct:  327 LHRSHQNIVAKISVFNERLLAINSLVCLSVAFIPTLSTILDPSWGHHPASLTTGAAFXXXXXXXXXXXXXXXLQAAPLAEAPDGINESAETLLSEMLGRPIACGTGIIPGNILA-SPADSPRSSQEIEKKDDVEDMLMPRRAPRLFQEPSCLAQGRGIDSNLLRRLQAIRDEYEIGSASILPVMAFFLTLLTASLQFAGETSPYTPAAFLLTFFVYTAEHRILRPRAAR 554
[Close]
BLAST of NO08G01890 vs. NCBI_GenBank
Match: EWM26718.1 (hypothetical protein Naga_100001g94 [Nannochloropsis gaditana])

HSP 1 Score: 237.3 bits (604), Expect = 8.300e-59
Identity = 148/229 (64.63%), Postives = 168/229 (73.36%), Query Frame = 0 
Query:    1 MHRSHQNIVAKIQAFSPTLLAINCLVCLSVAFIPTLNTILDVSWSHDPASLTXXXXXXXXXXXXXXXXXXXXLRAAPLAEAPEGIHQSPDALLSEMLGRPVARGAGIISGHVLSPSRTVNXXXXXXXXXXXXXXXXXXXRYVPRLFQDPSCLP--GGVNEELLTRLQAIRDWYEIGSACILPGMALFLTLLTASLQFVGHESPFVPLFFLLTFFVYSVEHRMLRPRAAK 228
            +HRSHQNIVAKI  F+  LLAIN LVCLSVAFIPTL+TILD SW H PASLT     XXXXXXXXXXXXXXXL+AAPLAEAP+GI++S + LLSEMLGRP+A G GII G++L+ S   +                   R  PRLFQ+PSCL    G++  LL RLQAIRD YEIGSA ILP MA FLTLLTASLQF G  SP+ P  FLLTFFVY+ EHR+LRPRAA+
Sbjct:  213 LHRSHQNIVAKISVFNERLLAINSLVCLSVAFIPTLSTILDPSWGHHPASLTTGAAFXXXXXXXXXXXXXXXLQAAPLAEAPDGINESAETLLSEMLGRPIACGTGIIPGNILA-SPADSPRSSQEIEKKDDVEDMLMPRRAPRLFQEPSCLAQGRGIDSNLLRRLQAIRDEYEIGSASILPVMAFFLTLLTASLQFAGETSPYTPAAFLLTFFVYTAEHRILRPRAAR 440
The following BLAST results are available for this feature:
BLAST of NO08G01890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM26716.18.300e-5964.63hypothetical protein Naga_100001g94 [Nannochlorops... [more]
EWM26717.18.300e-5964.63hypothetical protein Naga_100001g94 [Nannochlorops... [more]
EWM26718.18.300e-5964.63hypothetical protein Naga_100001g94 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G01890.1NO08G01890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G01890.1NO08G01890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G01890 ID=NO08G01890|Name=NO08G01890|organism=Nannochloropsis oceanica|type=gene|length=1182bp
ATGCATCGGAGCCATCAGAATATTGTGGCAAAGATCCAGGCGTTCTCCCC
GACGTTGCTCGCGATCAATTGCCTAGTTTGCCTCTCTGTGGCATTCATCC
CTACTCTAAACACCATCTTAGACGTCTCCTGGAGCCATGATCCTGCCTCG
CTCACAACTGCCGCGGCCTTCCTCCTCTGCGCCAGCCTGTTACTGCTCCT
CCTCCTGAACGCCGCATTGCGCGCAGCACCATTGGCCGAGGCACCGGAAG
GGATTCATCAAAGTCCTGATGCCTTGCTTTCGGAGATGCTTGGTCGGCCA
GTTGCGCGTGGAGCTGGTATTATTTCAGGCCATGTGTTGTCGCCTTCAAG
GACGGTGAATCAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAACCACAGCCTAGGTATGTTCCTCGTTTGTTCCAGGACCCCTCG
TGTTTGCCGGGCGGGGTGAACGAGGAATTGCTAACACGGCTGCAGGCGAT
TAGGGATTGGTACGAGATCGGGAGTGCATGTATTTTGCCAGGTATGGCGT
TGTTCCTCACTTTGTTGACGGCATCACTTCAATTTGTGGGCCATGAAAGT
CCCTTTGTCCCCCTATTTTTCCTCTTGACTTTTTTTGTGTATTCTGTCGA
GCATCGTATGTTGCGTCCGCGGGCCGCCAAGCAGATTCGCGAAATTCAGC
AGCATTTACGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAATCCCAGCACCACCACCAAAGAGGATTTTT
GTCGTCGCGTTCACACTTTTACAAAGGGGCCCGACCGCCAATGATGTCAA
CCCTGCTGACGGTGAGGGAAGAATCATCGTTTAGCTCGTCGGTTGGCTCC
TCTTTCACGGTTGACGGGGATTCGGGTGCACCAGCAGAACAGCAGCAAGA
GCAGCAGCAAGAGCAGCAGCAGCACGAGCGGGAGAAGAAGGAGGAAAAGA
ACCGGCGGGGGGAAGAAGAGAGGTACCTACCCGTGCTTACGCTTCTGGGG
CAACAGGGTTCACGGGAAGAGGGAGGGAGGGACGATGAGGTCAAGGAGCA
GGGAGTTTTTGCGAGGCAGGGGCGGCTGGAATCTTTGTCGGGGGGGTCCG
GTGAGGAAAAATATGTACATTACAAGAAATAA
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protein sequence of NO08G01890.1

>NO08G01890.1-protein ID=NO08G01890.1-protein|Name=NO08G01890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MHRSHQNIVAKIQAFSPTLLAINCLVCLSVAFIPTLNTILDVSWSHDPAS
LTTAAAFLLCASLLLLLLLNAALRAAPLAEAPEGIHQSPDALLSEMLGRP
VARGAGIISGHVLSPSRTVNQEEEEEEEEEEEEEEEPQPRYVPRLFQDPS
CLPGGVNEELLTRLQAIRDWYEIGSACILPGMALFLTLLTASLQFVGHES
PFVPLFFLLTFFVYSVEHRMLRPRAAKQIREIQQHLRQQQQQQQQQQQQQ
QQQQQQQSQHHHQRGFLSSRSHFYKGARPPMMSTLLTVREESSFSSSVGS
SFTVDGDSGAPAEQQQEQQQEQQQHEREKKEEKNRRGEEERYLPVLTLLG
QQGSREEGGRDDEVKEQGVFARQGRLESLSGGSGEEKYVHYKK*
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Synonyms
Publications