NO08G01890.1, NO08G01890.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01890.1
Unique NameNO08G01890.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1182
Alignment locationchr8:573047..574228 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:573047..574228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G01890.1 vs.
Match: EWM26716.1 (hypothetical protein Naga_100001g94 [Nannochloropsis gaditana])

HSP 1 Score: 271.2 bits (692), Expect = 5.200e-69
Identity = 179/303 (59.08%), Postives = 211/303 (69.64%), Query Frame = 0 
Query:    1 MHRSHQNIVAKIQAFSPTLLAINCLVCLSVAFIPTLNTILDVSWSHDPASLTTAAAFLLCASLLLLLLLNAALRAAPLAEAPEGIHQSPDALLSEMLGRPVARGAGIISGHVLSPSRTVNQEEEEEEEEEEEEEEEPQPRYVPRLFQDPSCLP--GGVNEELLTRLQAIRDWYEIGSACILPGMALFLTLLTASLQFVGHESPFVPLFFLLTFFVYSVEHRMLRPRAAKQIREIQQHLRQQQQQQQQQQQQQQQQQQQQSQHHHQRGFLSSRSHFYKGARPPMMSTLLTVREESSFSSSVGSS 302
            +HRSHQNIVAKI  F+  LLAIN LVCLSVAFIPTL+TILD SW H PASLTT AAFLL ASLLLL LL AAL+AAPLAEAP+GI++S + LLSEMLGRP+A G GII G++L+ S   +    +E E++++ E+   PR  PRLFQ+PSCL    G++  LL RLQAIRD YEIGSA ILP MA FLTLLTASLQF G  SP+ P  FLLTFFVY+ EHR+LRPRAA++IR+IQ+ L+Q QQ+Q                 H    FL         A+    S L TVREE S  SSVG S
Sbjct:  248 LHRSHQNIVAKISVFNERLLAINSLVCLSVAFIPTLSTILDPSWGHHPASLTTGAAFLLVASLLLLFLLMAALQAAPLAEAPDGINESAETLLSEMLGRPIACGTGIIPGNILA-SPADSPRSSQEIEKKDDVEDMLMPRRAPRLFQEPSCLAQGRGIDSNLLRRLQAIRDEYEIGSASILPVMAFFLTLLTASLQFAGETSPYTPAAFLLTFFVYTAEHRILRPRAARKIRKIQRQLQQHQQEQ-----------------HGYPPFLP--------AKVSPSSKLETVREE-SLVSSVGES 523
The following BLAST results are available for this feature:
BLAST of NO08G01890.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26716.15.200e-6959.08hypothetical protein Naga_100001g94 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01890NO08G01890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01890.1NO08G01890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01890.1.cds1NO08G01890.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01890.1 ID=NO08G01890.1|Name=NO08G01890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1182bp
ATGCATCGGAGCCATCAGAATATTGTGGCAAAGATCCAGGCGTTCTCCCC
GACGTTGCTCGCGATCAATTGCCTAGTTTGCCTCTCTGTGGCATTCATCC
CTACTCTAAACACCATCTTAGACGTCTCCTGGAGCCATGATCCTGCCTCG
CTCACAACTGCCGCGGCCTTCCTCCTCTGCGCCAGCCTGTTACTGCTCCT
CCTCCTGAACGCCGCATTGCGCGCAGCACCATTGGCCGAGGCACCGGAAG
GGATTCATCAAAGTCCTGATGCCTTGCTTTCGGAGATGCTTGGTCGGCCA
GTTGCGCGTGGAGCTGGTATTATTTCAGGCCATGTGTTGTCGCCTTCAAG
GACGGTGAATCAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAACCACAGCCTAGGTATGTTCCTCGTTTGTTCCAGGACCCCTCG
TGTTTGCCGGGCGGGGTGAACGAGGAATTGCTAACACGGCTGCAGGCGAT
TAGGGATTGGTACGAGATCGGGAGTGCATGTATTTTGCCAGGTATGGCGT
TGTTCCTCACTTTGTTGACGGCATCACTTCAATTTGTGGGCCATGAAAGT
CCCTTTGTCCCCCTATTTTTCCTCTTGACTTTTTTTGTGTATTCTGTCGA
GCATCGTATGTTGCGTCCGCGGGCCGCCAAGCAGATTCGCGAAATTCAGC
AGCATTTACGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAATCCCAGCACCACCACCAAAGAGGATTTTT
GTCGTCGCGTTCACACTTTTACAAAGGGGCCCGACCGCCAATGATGTCAA
CCCTGCTGACGGTGAGGGAAGAATCATCGTTTAGCTCGTCGGTTGGCTCC
TCTTTCACGGTTGACGGGGATTCGGGTGCACCAGCAGAACAGCAGCAAGA
GCAGCAGCAAGAGCAGCAGCAGCACGAGCGGGAGAAGAAGGAGGAAAAGA
ACCGGCGGGGGGAAGAAGAGAGGTACCTACCCGTGCTTACGCTTCTGGGG
CAACAGGGTTCACGGGAAGAGGGAGGGAGGGACGATGAGGTCAAGGAGCA
GGGAGTTTTTGCGAGGCAGGGGCGGCTGGAATCTTTGTCGGGGGGGTCCG
GTGAGGAAAAATATGTACATTACAAGAAATAA
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protein sequence of NO08G01890.1

>NO08G01890.1-protein ID=NO08G01890.1-protein|Name=NO08G01890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MHRSHQNIVAKIQAFSPTLLAINCLVCLSVAFIPTLNTILDVSWSHDPAS
LTTAAAFLLCASLLLLLLLNAALRAAPLAEAPEGIHQSPDALLSEMLGRP
VARGAGIISGHVLSPSRTVNQEEEEEEEEEEEEEEEPQPRYVPRLFQDPS
CLPGGVNEELLTRLQAIRDWYEIGSACILPGMALFLTLLTASLQFVGHES
PFVPLFFLLTFFVYSVEHRMLRPRAAKQIREIQQHLRQQQQQQQQQQQQQ
QQQQQQQSQHHHQRGFLSSRSHFYKGARPPMMSTLLTVREESSFSSSVGS
SFTVDGDSGAPAEQQQEQQQEQQQHEREKKEEKNRRGEEERYLPVLTLLG
QQGSREEGGRDDEVKEQGVFARQGRLESLSGGSGEEKYVHYKK*
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mRNA from alignment at chr8:573047..574228+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01890.1 ID=NO08G01890.1|Name=NO08G01890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1182bp|location=Sequence derived from alignment at chr8:573047..574228+ (Nannochloropsis oceanica)
ATGCATCGGAGCCATCAGAATATTGTGGCAAAGATCCAGGCGTTCTCCCC
GACGTTGCTCGCGATCAATTGCCTAGTTTGCCTCTCTGTGGCATTCATCC
CTACTCTAAACACCATCTTAGACGTCTCCTGGAGCCATGATCCTGCCTCG
CTCACAACTGCCGCGGCCTTCCTCCTCTGCGCCAGCCTGTTACTGCTCCT
CCTCCTGAACGCCGCATTGCGCGCAGCACCATTGGCCGAGGCACCGGAAG
GGATTCATCAAAGTCCTGATGCCTTGCTTTCGGAGATGCTTGGTCGGCCA
GTTGCGCGTGGAGCTGGTATTATTTCAGGCCATGTGTTGTCGCCTTCAAG
GACGGTGAATCAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAACCACAGCCTAGGTATGTTCCTCGTTTGTTCCAGGACCCCTCG
TGTTTGCCGGGCGGGGTGAACGAGGAATTGCTAACACGGCTGCAGGCGAT
TAGGGATTGGTACGAGATCGGGAGTGCATGTATTTTGCCAGGTATGGCGT
TGTTCCTCACTTTGTTGACGGCATCACTTCAATTTGTGGGCCATGAAAGT
CCCTTTGTCCCCCTATTTTTCCTCTTGACTTTTTTTGTGTATTCTGTCGA
GCATCGTATGTTGCGTCCGCGGGCCGCCAAGCAGATTCGCGAAATTCAGC
AGCATTTACGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAATCCCAGCACCACCACCAAAGAGGATTTTT
GTCGTCGCGTTCACACTTTTACAAAGGGGCCCGACCGCCAATGATGTCAA
CCCTGCTGACGGTGAGGGAAGAATCATCGTTTAGCTCGTCGGTTGGCTCC
TCTTTCACGGTTGACGGGGATTCGGGTGCACCAGCAGAACAGCAGCAAGA
GCAGCAGCAAGAGCAGCAGCAGCACGAGCGGGAGAAGAAGGAGGAAAAGA
ACCGGCGGGGGGAAGAAGAGAGGTACCTACCCGTGCTTACGCTTCTGGGG
CAACAGGGTTCACGGGAAGAGGGAGGGAGGGACGATGAGGTCAAGGAGCA
GGGAGTTTTTGCGAGGCAGGGGCGGCTGGAATCTTTGTCGGGGGGGTCCG
GTGAGGAAAAATATGTACATTACAAGAAATAA
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Coding sequence (CDS) from alignment at chr8:573047..574228+

>NO08G01890.1 ID=NO08G01890.1|Name=NO08G01890.1|organism=Nannochloropsis oceanica|type=CDS|length=1182bp|location=Sequence derived from alignment at chr8:573047..574228+ (Nannochloropsis oceanica)
ATGCATCGGAGCCATCAGAATATTGTGGCAAAGATCCAGGCGTTCTCCCC
GACGTTGCTCGCGATCAATTGCCTAGTTTGCCTCTCTGTGGCATTCATCC
CTACTCTAAACACCATCTTAGACGTCTCCTGGAGCCATGATCCTGCCTCG
CTCACAACTGCCGCGGCCTTCCTCCTCTGCGCCAGCCTGTTACTGCTCCT
CCTCCTGAACGCCGCATTGCGCGCAGCACCATTGGCCGAGGCACCGGAAG
GGATTCATCAAAGTCCTGATGCCTTGCTTTCGGAGATGCTTGGTCGGCCA
GTTGCGCGTGGAGCTGGTATTATTTCAGGCCATGTGTTGTCGCCTTCAAG
GACGGTGAATCAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAACCACAGCCTAGGTATGTTCCTCGTTTGTTCCAGGACCCCTCG
TGTTTGCCGGGCGGGGTGAACGAGGAATTGCTAACACGGCTGCAGGCGAT
TAGGGATTGGTACGAGATCGGGAGTGCATGTATTTTGCCAGGTATGGCGT
TGTTCCTCACTTTGTTGACGGCATCACTTCAATTTGTGGGCCATGAAAGT
CCCTTTGTCCCCCTATTTTTCCTCTTGACTTTTTTTGTGTATTCTGTCGA
GCATCGTATGTTGCGTCCGCGGGCCGCCAAGCAGATTCGCGAAATTCAGC
AGCATTTACGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAATCCCAGCACCACCACCAAAGAGGATTTTT
GTCGTCGCGTTCACACTTTTACAAAGGGGCCCGACCGCCAATGATGTCAA
CCCTGCTGACGGTGAGGGAAGAATCATCGTTTAGCTCGTCGGTTGGCTCC
TCTTTCACGGTTGACGGGGATTCGGGTGCACCAGCAGAACAGCAGCAAGA
GCAGCAGCAAGAGCAGCAGCAGCACGAGCGGGAGAAGAAGGAGGAAAAGA
ACCGGCGGGGGGAAGAAGAGAGGTACCTACCCGTGCTTACGCTTCTGGGG
CAACAGGGTTCACGGGAAGAGGGAGGGAGGGACGATGAGGTCAAGGAGCA
GGGAGTTTTTGCGAGGCAGGGGCGGCTGGAATCTTTGTCGGGGGGGTCCG
GTGAGGAAAAATATGTACATTACAAGAAATAA
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Synonyms
Publications