NO08G01350, NO08G01350 (gene) Nannochloropsis oceanica

Overview
NameNO08G01350
Unique NameNO08G01350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1301
Alignment locationchr8:407063..408363 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:407063..408363 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO08G01350 vs. NCBI_GenBank
Match: EWM26688.1 (hypothetical protein Naga_100001g40 [Nannochloropsis gaditana])

HSP 1 Score: 141.0 bits (354), Expect = 3.100e-30
Identity = 63/80 (78.75%), Postives = 67/80 (83.75%), Query Frame = 0
Query:   73 MGGGRWFYFPTHIWTPSGGWFASPKNWKANTLVALGGIGLAALSTFSFSASLERRPIAPAWHIPSQSW-----CKHAEED 148
            MGGGRWFYFPTHIWTPSGGWF +PKNW+ANTL+ LGGIG+AA STFS SASLERRPIAPAWHIPSQSW     C H   D
Sbjct:   15 MGGGRWFYFPTHIWTPSGGWFPNPKNWRANTLLVLGGIGVAAFSTFSLSASLERRPIAPAWHIPSQSWRLLLSCGHVFRD 94          
BLAST of NO08G01350 vs. NCBI_GenBank
Match: CBJ32950.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 114.4 bits (285), Expect = 3.100e-22
Identity = 49/79 (62.03%), Postives = 61/79 (77.22%), Query Frame = 0
Query:   73 MGGGRWFYFPTHIWTPSGGWFASPKNWKANTLVALGGIGLAALSTFSFSASLERRPIAPAWHIPSQSWCKHAEEDDDSL 152
            MGGGR F+FP H+W+P+GGW+ +P +WK NT  A  GIGLA ++    S+  ERRPIAPA+HIPSQ WCKHA+EDD SL
Sbjct:    1 MGGGRHFHFPKHVWSPAGGWWVNPPHWKRNTGFAFVGIGLAFIAIARISSDRERRPIAPAFHIPSQRWCKHAKEDDPSL 79          
BLAST of NO08G01350 vs. NCBI_GenBank
Match: GAX15867.1 (hypothetical protein FisN_2Lu418 [Fistulifera solaris])

HSP 1 Score: 105.5 bits (262), Expect = 1.400e-19
Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 0
Query:   73 MGGGRWFYFPTHIWTPSGGWFASPKNWKANTLVALGGIGLAALSTFSFSASLERRPIAPAWHIPSQSWCKHAEEDDDSL 152
            MGGG W+Y P  +W+P+GGW+ +P NWK NT +A   +G+ A+  F  S+S ERRPI P WHIPSQ WCKHA EDD  L
Sbjct:    1 MGGGGWYYVP-KVWSPAGGWWNNPANWKRNTGIAGAVVGILAVGLFQVSSSRERRPIPPPWHIPSQYWCKHAVEDDPRL 78          
BLAST of NO08G01350 vs. NCBI_GenBank
Match: OAO16634.1 (hypothetical protein AV274_1631 [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 89.4 bits (220), Expect = 1.100e-14
Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = 0
Query:   73 MGGGRWFYFPTHIWTPSGGWFASPKNWKANTLVALGGIGLAALSTFSFSASLERRPIAPAWHIPSQSWCKHAEEDDDSL 152
            M GG  F +P ++W+P+GGW+    NW+ NT +A   +   ++  F  SA++ERRPI P  HIPSQ WCKHA+EDD  L
Sbjct:    1 MSGGTPFRYPKYVWSPAGGWWGQNANWRRNTRIAAVVMVALSIPVFIASANMERRPIPPVRHIPSQYWCKHAKEDDPRL 79          
BLAST of NO08G01350 vs. NCBI_GenBank
Match: XP_019007920.1 (hypothetical protein I206_07556 [Kwoniella pini CBS 10737] >OCF46701.1 hypothetical protein I206_07556 [Kwoniella pini CBS 10737])

HSP 1 Score: 84.0 bits (206), Expect = 4.500e-13
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 0
Query:   73 MGGGRWFYFPTHIWTPSGGWFASPKNWKANTLVALGGIGLAALSTFSFSASLERRPIAPAWHIPSQSWCKHAEE 147
            MGGG  + FP  +WTPSGGW++ P NW  NT + + GIG+A    +  SAS E+R IAP   IPSQ W   A E
Sbjct:    1 MGGGAHYPFPKEVWTPSGGWWSRPSNWATNTAICVFGIGIATFGVWRLSASKEQRHIAPTRAIPSQRWSPQARE 74          
BLAST of NO08G01350 vs. NCBI_GenBank
Match: OCF78662.1 (hypothetical protein I204_00604 [Kwoniella mangroviensis CBS 8886])

HSP 1 Score: 84.0 bits (206), Expect = 4.500e-13
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = 0
Query:   70 AITMGGGRWFYFPTHIWTPSGGWFASPKNWKANTLVALGGIGLAALSTFSFSASLERRPIAPAWHIPSQSWCKHAEE 147
            AI  GGG  + +P  +WTPSGGW++ P NW  NT + + GIGLA    +  SAS E+R IAP   IPSQ W   A+E
Sbjct:    4 AIQDGGGAHYPYPKEVWTPSGGWWSRPSNWATNTAICVFGIGLATFGVWRLSASKEQRHIAPTRPIPSQRWSPQAKE 80          
BLAST of NO08G01350 vs. NCBI_GenBank
Match: XP_002297069.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED86797.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 83.6 bits (205), Expect = 5.900e-13
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 0
Query:   81 FPTHIWTPSGGWFASPKNWKANTLVALGGIGLAALSTFSFSASLERRPIAPAWHIPSQSWCKHAEEDDDSL 152
            F   +W+P+GGW+ +P  WK NT+     I +A+   F  SA  ERRPI P  HIPSQ WCKHA+EDD SL
Sbjct:    1 FKKQVWSPAGGWWPTPVAWKRNTVACAFCICVASAMIFKVSAEKERRPIPPFKHIPSQRWCKHAKEDDPSL 71          
BLAST of NO08G01350 vs. NCBI_GenBank
Match: XP_014529945.1 (hypothetical protein JH06_0109 [Blastocystis sp. subtype 4] >KNB46502.1 hypothetical protein JH06_0109 [Blastocystis sp. subtype 4])

HSP 1 Score: 83.6 bits (205), Expect = 5.900e-13
Identity = 40/81 (49.38%), Postives = 49/81 (60.49%), Query Frame = 0
Query:   73 MGGGR--WFYFPTHIWTPSGGWFASPKNWKANTLVALGGIGLAALSTFSFSASLERRPIAPAWHIPSQSWCKHAEEDDDSL 152
            M GG    F F  ++W+P+GGW+    NWK NT +A        +  F  S +LERRPIAP  HI SQ WCKHA+EDD SL
Sbjct:    1 MSGGTVGMFMFDHYVWSPAGGWWGQNVNWKRNTKIAAVVAFACCIPVFMASINLERRPIAPTRHILSQKWCKHAKEDDPSL 81          
BLAST of NO08G01350 vs. NCBI_GenBank
Match: XP_019032531.1 (hypothetical protein L198_03298 [Tsuchiyaea wingfieldii CBS 7118] >ODN99454.1 hypothetical protein L198_03298 [Tsuchiyaea wingfieldii CBS 7118])

HSP 1 Score: 83.6 bits (205), Expect = 5.900e-13
Identity = 38/74 (51.35%), Postives = 46/74 (62.16%), Query Frame = 0
Query:   73 MGGGRWFYFPTHIWTPSGGWFASPKNWKANTLVALGGIGLAALSTFSFSASLERRPIAPAWHIPSQSWCKHAEE 147
            MGGG  + +P  +WTPSGGW++ P NWK NT  ALGGI +A    +  SA+ E R IAP   IPSQ W   A E
Sbjct:    1 MGGGGHYPYPKEVWTPSGGWWSRPSNWKGNTAFALGGILVATFGVWRLSANREERHIAPTRPIPSQMWSPQARE 74          
BLAST of NO08G01350 vs. NCBI_GenBank
Match: OEU14022.1 (hypothetical protein FRACYDRAFT_188740, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 83.2 bits (204), Expect = 7.700e-13
Identity = 38/67 (56.72%), Postives = 45/67 (67.16%), Query Frame = 0
Query:   85 IWTPSGGWFASPKNWKANTLVALGGIGLAALSTFSFSASLERRPIAPAWHIPSQSWCKHAEEDDDSL 152
            +WTP GGW+ +P  WK NT +A  GI +  +  F  SAS ERRPIAP   IPSQSWCK A+EDD  L
Sbjct:    1 VWTPYGGWWVNPPQWKRNTGMAGLGIAVVMMGLFKVSASKERRPIAPYKQIPSQSWCKFAKEDDPRL 67          
The following BLAST results are available for this feature:
BLAST of NO08G01350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26688.13.100e-3078.75hypothetical protein Naga_100001g40 [Nannochlorops... [more]
CBJ32950.13.100e-2262.03conserved unknown protein [Ectocarpus siliculosus][more]
GAX15867.11.400e-1956.96hypothetical protein FisN_2Lu418 [Fistulifera sola... [more]
OAO16634.11.100e-1448.10hypothetical protein AV274_1631 [Blastocystis sp. ... [more]
XP_019007920.14.500e-1350.00hypothetical protein I206_07556 [Kwoniella pini CB... [more]
OCF78662.14.500e-1349.35hypothetical protein I204_00604 [Kwoniella mangrov... [more]
XP_002297069.15.900e-1352.11predicted protein, partial [Thalassiosira pseudona... [more]
XP_014529945.15.900e-1349.38hypothetical protein JH06_0109 [Blastocystis sp. s... [more]
XP_019032531.15.900e-1351.35hypothetical protein L198_03298 [Tsuchiyaea wingfi... [more]
OEU14022.17.700e-1356.72hypothetical protein FRACYDRAFT_188740, partial [F... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G01350.1NO08G01350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582201gene_3462Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g40gene3919Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G01350.1NO08G01350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G01350 ID=NO08G01350|Name=NO08G01350|organism=Nannochloropsis oceanica|type=gene|length=1301bp
TGTTTGGATGTTGTTTTGTTGCTTTGTTTCTTGTGCTGTTATCAAAGTCT
AGCTTGCGAAATCGGGAAAGCCATTGTGTGGGGATCGAAGCGAAGGCGCG
CGTCACAAGAGCTGCTGTTATCTTCCGTCATATTGCTTACTGCTGCCATC
TTTGTCGCTTTCATCCACTGTGCCACACACCCGACACCTAGCCTTAACAT
GCCCACAGTCATGGTGACATATCCTCTTGGTCGTGGTAGGCATGCTGTTG
CACCAGGGCGGGCTTATCTAACCGGTGCGGCAAGCCAAAGCAGACTTCTT
ACTCGTTATGATCTCCCCGTGACTCTGCGCAATGCTCACATGAGCACCAA
GCATACCGTACACATAACCAACCAGACTCTCAACCACCCCTCCATCATAT
ACAGGGCAATAACCATGGGCGGGGGTAGGTGGTTCTACTTCCCGACGCAC
ATCTGGACGCCCTCGGGCGGGTGGTTTGCCAGCCCCAAGAACTGGAAGGC
CAATACCTTGGTAGCCCTTGGCGGCATTGGCCTGGCCGCCTTGTCCACCT
TCTCCTTCTCTGCATCCTTGGAGgtaagcagtttgaatgggatgaattga
ttggcgtgcgggggtagcgaaagcagggctgagagtgagtgcgcgcgatc
gcgtgtgagccgggcttccccgcgagggtggcgagagagaagaatgatga
ggaaatggttacggcttttttgagagaatgggatcggcgagacctatccc
ttcgtttgagtgcaagtcatggtaatacgttctcttaggacccattttgt
gatacgccgcatgcatcactgcacgtgagaagacggaggacgcaggaaga
gaggtgaaagacgatacacgtaagcacacaacataaactcaatccgcttc
gacgacccacacaaaaacacacgaccacagCGGCGACCAATTGCACCAGC
CTGGCACATTCCCTCGCAGTCATGGTGCAAACACGCGGAGGAAGATGACG
ACTCCCTTTAAGATTAAGCGACGGAGAAGAACGATATATTTCATGAAGGA
GAGCGTGGAGGGAGGATCTCGATAAGCACGCACTATGAAGCTTTTCATGA
TGGCAGAGAAGGATGTGTGCACGTTTGTGCGAGTGTGTCGTGCGTGTGAA
GAACTTAGAAATGTGTCGATGACCTGACCGATGGGAGAGTACTAAAAGAA
GCAAAACGATGACTATCGATGAACATTCGAGTTGGACGCCGCGAAGGATC
TTTAAATTGATTCCAATGAATGCATTTGCAATTTTGTGGGCCGTCCGGGG
A
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protein sequence of NO08G01350.1

>NO08G01350.1-protein ID=NO08G01350.1-protein|Name=NO08G01350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MPTVMVTYPLGRGRHAVAPGRAYLTGAASQSRLLTRYDLPVTLRNAHMST
KHTVHITNQTLNHPSIIYRAITMGGGRWFYFPTHIWTPSGGWFASPKNWK
ANTLVALGGIGLAALSTFSFSASLERRPIAPAWHIPSQSWCKHAEEDDDS
L*
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Synonyms
Publications