NO08G01350.1, NO08G01350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01350.1
Unique NameNO08G01350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length944
Alignment locationchr8:407063..408363 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:407063..408363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO08G01350.1 vs.
Match: EWM26688.1 (hypothetical protein Naga_100001g40 [Nannochloropsis gaditana])

HSP 1 Score: 141.0 bits (354), Expect = 3.100e-30
Identity = 63/80 (78.75%), Postives = 67/80 (83.75%), Query Frame = 0
Query:   73 MGGGRWFYFPTHIWTPSGGWFASPKNWKANTLVALGGIGLAALSTFSFSASLERRPIAPAWHIPSQSW-----CKHAEED 148
            MGGGRWFYFPTHIWTPSGGWF +PKNW+ANTL+ LGGIG+AA STFS SASLERRPIAPAWHIPSQSW     C H   D
Sbjct:   15 MGGGRWFYFPTHIWTPSGGWFPNPKNWRANTLLVLGGIGVAAFSTFSLSASLERRPIAPAWHIPSQSWRLLLSCGHVFRD 94          
The following BLAST results are available for this feature:
BLAST of NO08G01350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26688.13.100e-3078.75hypothetical protein Naga_100001g40 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01350NO08G01350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01350.1NO08G01350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01350.1.cds1NO08G01350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01350.1.cds2NO08G01350.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01350.1 ID=NO08G01350.1|Name=NO08G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=944bp
TGTTTGGATGTTGTTTTGTTGCTTTGTTTCTTGTGCTGTTATCAAAGTCT
AGCTTGCGAAATCGGGAAAGCCATTGTGTGGGGATCGAAGCGAAGGCGCG
CGTCACAAGAGCTGCTGTTATCTTCCGTCATATTGCTTACTGCTGCCATC
TTTGTCGCTTTCATCCACTGTGCCACACACCCGACACCTAGCCTTAACAT
GCCCACAGTCATGGTGACATATCCTCTTGGTCGTGGTAGGCATGCTGTTG
CACCAGGGCGGGCTTATCTAACCGGTGCGGCAAGCCAAAGCAGACTTCTT
ACTCGTTATGATCTCCCCGTGACTCTGCGCAATGCTCACATGAGCACCAA
GCATACCGTACACATAACCAACCAGACTCTCAACCACCCCTCCATCATAT
ACAGGGCAATAACCATGGGCGGGGGTAGGTGGTTCTACTTCCCGACGCAC
ATCTGGACGCCCTCGGGCGGGTGGTTTGCCAGCCCCAAGAACTGGAAGGC
CAATACCTTGGTAGCCCTTGGCGGCATTGGCCTGGCCGCCTTGTCCACCT
TCTCCTTCTCTGCATCCTTGGAGCGGCGACCAATTGCACCAGCCTGGCAC
ATTCCCTCGCAGTCATGGTGCAAACACGCGGAGGAAGATGACGACTCCCT
TTAAGATTAAGCGACGGAGAAGAACGATATATTTCATGAAGGAGAGCGTG
GAGGGAGGATCTCGATAAGCACGCACTATGAAGCTTTTCATGATGGCAGA
GAAGGATGTGTGCACGTTTGTGCGAGTGTGTCGTGCGTGTGAAGAACTTA
GAAATGTGTCGATGACCTGACCGATGGGAGAGTACTAAAAGAAGCAAAAC
GATGACTATCGATGAACATTCGAGTTGGACGCCGCGAAGGATCTTTAAAT
TGATTCCAATGAATGCATTTGCAATTTTGTGGGCCGTCCGGGGA
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protein sequence of NO08G01350.1

>NO08G01350.1-protein ID=NO08G01350.1-protein|Name=NO08G01350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MPTVMVTYPLGRGRHAVAPGRAYLTGAASQSRLLTRYDLPVTLRNAHMST
KHTVHITNQTLNHPSIIYRAITMGGGRWFYFPTHIWTPSGGWFASPKNWK
ANTLVALGGIGLAALSTFSFSASLERRPIAPAWHIPSQSWCKHAEEDDDS
L*
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mRNA from alignment at chr8:407063..408363-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01350.1 ID=NO08G01350.1|Name=NO08G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1301bp|location=Sequence derived from alignment at chr8:407063..408363- (Nannochloropsis oceanica)
TGTTTGGATGTTGTTTTGTTGCTTTGTTTCTTGTGCTGTTATCAAAGTCT AGCTTGCGAAATCGGGAAAGCCATTGTGTGGGGATCGAAGCGAAGGCGCG CGTCACAAGAGCTGCTGTTATCTTCCGTCATATTGCTTACTGCTGCCATC TTTGTCGCTTTCATCCACTGTGCCACACACCCGACACCTAGCCTTAACAT GCCCACAGTCATGGTGACATATCCTCTTGGTCGTGGTAGGCATGCTGTTG CACCAGGGCGGGCTTATCTAACCGGTGCGGCAAGCCAAAGCAGACTTCTT ACTCGTTATGATCTCCCCGTGACTCTGCGCAATGCTCACATGAGCACCAA GCATACCGTACACATAACCAACCAGACTCTCAACCACCCCTCCATCATAT ACAGGGCAATAACCATGGGCGGGGGTAGGTGGTTCTACTTCCCGACGCAC ATCTGGACGCCCTCGGGCGGGTGGTTTGCCAGCCCCAAGAACTGGAAGGC CAATACCTTGGTAGCCCTTGGCGGCATTGGCCTGGCCGCCTTGTCCACCT TCTCCTTCTCTGCATCCTTGGAGGTAAGCAGTTTGAATGGGATGAATTGA TTGGCGTGCGGGGGTAGCGAAAGCAGGGCTGAGAGTGAGTGCGCGCGATC GCGTGTGAGCCGGGCTTCCCCGCGAGGGTGGCGAGAGAGAAGAATGATGA GGAAATGGTTACGGCTTTTTTGAGAGAATGGGATCGGCGAGACCTATCCC TTCGTTTGAGTGCAAGTCATGGTAATACGTTCTCTTAGGACCCATTTTGT GATACGCCGCATGCATCACTGCACGTGAGAAGACGGAGGACGCAGGAAGA GAGGTGAAAGACGATACACGTAAGCACACAACATAAACTCAATCCGCTTC GACGACCCACACAAAAACACACGACCACAGCGGCGACCAATTGCACCAGC CTGGCACATTCCCTCGCAGTCATGGTGCAAACACGCGGAGGAAGATGACG ACTCCCTTTAAGATTAAGCGACGGAGAAGAACGATATATTTCATGAAGGA GAGCGTGGAGGGAGGATCTCGATAAGCACGCACTATGAAGCTTTTCATGA TGGCAGAGAAGGATGTGTGCACGTTTGTGCGAGTGTGTCGTGCGTGTGAA GAACTTAGAAATGTGTCGATGACCTGACCGATGGGAGAGTACTAAAAGAA GCAAAACGATGACTATCGATGAACATTCGAGTTGGACGCCGCGAAGGATC TTTAAATTGATTCCAATGAATGCATTTGCAATTTTGTGGGCCGTCCGGGG A
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Coding sequence (CDS) from alignment at chr8:407063..408363-

>NO08G01350.1 ID=NO08G01350.1|Name=NO08G01350.1|organism=Nannochloropsis oceanica|type=CDS|length=456bp|location=Sequence derived from alignment at chr8:407063..408363- (Nannochloropsis oceanica)
ATGCCCACAGTCATGGTGACATATCCTCTTGGTCGTGGTAGGCATGCTGT
TGCACCAGGGCGGGCTTATCTAACCGGTGCGGCAAGCCAAAGCAGACTTC
TTACTCGTTATGATCTCCCCGTGACTCTGCGCAATGCTCACATGAGCACC
AAGCATACCGTACACATAACCAACCAGACTCTCAACCACCCCTCCATCAT
ATACAGGGCAATAACCATGGGCGGGGGTAGGTGGTTCTACTTCCCGACGC
ACATCTGGACGCCCTCGGGCGGGTGGTTTGCCAGCCCCAAGAACTGGAAG
GCCAATACCTTGGTAGCCCTTGGCGGCATTGGCCTGGCCGCCTTGTCCAC
CTTCTCCTTCTCTGCATCCTTGGAGCGGCGACCAATTGCACCAGCCTGGC
ACATTCCCTCGCAGTCATGGTGCAAACACGCGGAGGAAGATGACGACTCC
CTTTAA
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Synonyms
Publications