NO08G01300, NO08G01300 (gene) Nannochloropsis oceanica

Overview
NameNO08G01300
Unique NameNO08G01300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length915
Alignment locationchr8:393973..394887 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:393973..394887 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO08G01300 vs. NCBI_GenBank
Match: EWM26668.1 (hypothetical protein Naga_100001g35 [Nannochloropsis gaditana])

HSP 1 Score: 169.1 bits (427), Expect = 2.100e-38
Identity = 102/186 (54.84%), Postives = 128/186 (68.82%), Query Frame = 0 
Query:  117 GDVKQFYFREHDENVVTLNLNSLLPKKTKHGRIGGSLYRALRDAGVDVAALGIPRGRPPRTVVGQKRPKRPTLLSLIKSGAELPMVPGAPRLRIVNIEMMPEEYEGQDGKGGLQDLTNTQQRRRVGSR-STSRRKVGGMMGNKRAKVAEAEGGKQEGEGGQKGPMEGLVADDEAATGLLLLLGETS 302
            G V +    E ++ V+ LNL++LLPKK+KHGRIGGSLYRALRDAGVDVAALGIPRGRPPRT VGQKRPKRPTLLS IKSGAELPMVPGAPRLRIVN+++M       DG+  ++    T   + +G R +T++++V G          + +  +  G G +      L AD+ AAT LLLLLGE +
Sbjct:  103 GKVHEKAAPETEDEVICLNLSTLLPKKSKHGRIGGSLYRALRDAGVDVAALGIPRGRPPRTKVGQKRPKRPTLLSFIKSGAELPMVPGAPRLRIVNMDLM------GDGEQLVEVEEPTVYGQGLGLRQATNKQRVTGRRRRSDVDKEDVDDKRLRGMGKRGEEPTDLAADEAAATELLLLLGENN 282
The following BLAST results are available for this feature:
BLAST of NO08G01300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26668.12.100e-3854.84hypothetical protein Naga_100001g35 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008923NSK008923Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G01300.1NO08G01300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100001g35gene3923Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G01300.1NO08G01300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G01300 ID=NO08G01300|Name=NO08G01300|organism=Nannochloropsis oceanica|type=gene|length=915bp
ATGACCATCCAGGCACAAGACATGCCCTACAGCCCCGTAAATCCGCCGCA
ATTCTCAGGCGACGCCTCCACTTGTGAAAACACGAATTCAAACCCTAAAC
GGGACGACAATGCACCCATCCTGACCACGCCTTCCGCCACGGCAATGGAC
TCGCAGACCACGCCCAACCCTGCACTACCAGCTAATGTAACAGCCAGTGC
CAGGTGCATAGATGCAGAAACAAGCACCCACGATGACGAAGCAGCCATTT
CGGCCGCCAGCACCGACGCGACAACTACCAACACGACAATCACTGCTCCC
GCCGCCGCCAACGCCACCGCCGCGGTCACCACCGCTGTTTCGCAGCAAGG
CGATGTCAAGCAATTCTATTTTCGAGAACACGATGAGAATGTCGTTACGC
TGAATCTCAACTCGCTATTGCCCAAGAAAACGAAGCACGGCCGAATCGGG
GGATCGTTGTATCGGGCTTTGCGAGACGCCGGGGTGGATGTGGCGGCGCT
GGGCATACCGCGTGGTCGTCCACCTCGCACGGTGGTGGGGCAAAAAAGGC
CGAAACGGCCTACTCTATTGTCTTTGATCAAGTCAGGGGCAGAATTACCC
ATGGTTCCGGGGGCGCCACGACTACGAATTGTGAACATAGAGATGATGCC
CGAGGAGTATGAGGGGCAGGACGGGAAGGGAGGCTTGCAAGATCTTACCA
ACACGCAGCAGCGACGGCGCGTAGGATCGAGGAGCACTAGTAGGAGGAAA
GTCGGCGGCATGATGGGGAATAAGCGGGCGAAAGTGGCGGAGGCGGAGGG
GGGAAAGCAGGAAGGGGAAGGAGGGCAGAAGGGACCGATGGAGGGCTTGG
TTGCGGATGATGAGGCGGCGACGGGGTTGTTGCTTTTGCTGGGAGAGACA
AGCTCGTTGACCTGA
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protein sequence of NO08G01300.1

>NO08G01300.1-protein ID=NO08G01300.1-protein|Name=NO08G01300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MTIQAQDMPYSPVNPPQFSGDASTCENTNSNPKRDDNAPILTTPSATAMD
SQTTPNPALPANVTASARCIDAETSTHDDEAAISAASTDATTTNTTITAP
AAANATAAVTTAVSQQGDVKQFYFREHDENVVTLNLNSLLPKKTKHGRIG
GSLYRALRDAGVDVAALGIPRGRPPRTVVGQKRPKRPTLLSLIKSGAELP
MVPGAPRLRIVNIEMMPEEYEGQDGKGGLQDLTNTQQRRRVGSRSTSRRK
VGGMMGNKRAKVAEAEGGKQEGEGGQKGPMEGLVADDEAATGLLLLLGET
SSLT*
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Synonyms
Publications