NO08G01300.1, NO08G01300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01300.1
Unique NameNO08G01300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length915
Alignment locationchr8:393973..394887 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:393973..394887 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G01300.1 vs.
Match: EWM26668.1 (hypothetical protein Naga_100001g35 [Nannochloropsis gaditana])

HSP 1 Score: 164.9 bits (416), Expect = 4.000e-37
Identity = 117/261 (44.83%), Postives = 157/261 (60.15%), Query Frame = 0 
Query:   42 TTPSATAMDSQTTPNPALPANVTASARCIDAETSTHDDEAAISAASTDATTTNTTITAPAAANATAAVTTAVSQQGDVKQFYFREHDENVVTLNLNSLLPKKTKHGRIGGSLYRALRDAGVDVAALGIPRGRPPRTVVGQKRPKRPTLLSLIKSGAELPMVPGAPRLRIVNIEMMPEEYEGQDGKGGLQDLTNTQQRRRVGSR-STSRRKVGGMMGNKRAKVAEAEGGKQEGEGGQKGPMEGLVADDEAATGLLLLLGETS 302
            +TPS+  M++QTTP+     N+T +      E  ++D +    + +             A+ N  A+        G V +    E ++ V+ LNL++LLPKK+KHGRIGGSLYRALRDAGVDVAALGIPRGRPPRT VGQKRPKRPTLLS IKSGAELPMVPGAPRLRIVN+++M       DG+  ++    T   + +G R +T++++V G          + +  +  G G +      L AD+ AAT LLLLLGE +
Sbjct:   54 STPSSATMNNQTTPS-----NMTLNTYSCPVEGGSNDYKGKGDSGA-------------ASGNELAS--------GKVHEKAAPETEDEVICLNLSTLLPKKSKHGRIGGSLYRALRDAGVDVAALGIPRGRPPRTKVGQKRPKRPTLLSFIKSGAELPMVPGAPRLRIVNMDLM------GDGEQLVEVEEPTVYGQGLGLRQATNKQRVTGRRRRSDVDKEDVDDKRLRGMGKRGEEPTDLAADEAAATELLLLLGENN 282
The following BLAST results are available for this feature:
BLAST of NO08G01300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26668.14.000e-3744.83hypothetical protein Naga_100001g35 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01300NO08G01300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01300.1NO08G01300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01300.1.cds1NO08G01300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01300.1 ID=NO08G01300.1|Name=NO08G01300.1|organism=Nannochloropsis oceanica|type=mRNA|length=915bp
ATGACCATCCAGGCACAAGACATGCCCTACAGCCCCGTAAATCCGCCGCA
ATTCTCAGGCGACGCCTCCACTTGTGAAAACACGAATTCAAACCCTAAAC
GGGACGACAATGCACCCATCCTGACCACGCCTTCCGCCACGGCAATGGAC
TCGCAGACCACGCCCAACCCTGCACTACCAGCTAATGTAACAGCCAGTGC
CAGGTGCATAGATGCAGAAACAAGCACCCACGATGACGAAGCAGCCATTT
CGGCCGCCAGCACCGACGCGACAACTACCAACACGACAATCACTGCTCCC
GCCGCCGCCAACGCCACCGCCGCGGTCACCACCGCTGTTTCGCAGCAAGG
CGATGTCAAGCAATTCTATTTTCGAGAACACGATGAGAATGTCGTTACGC
TGAATCTCAACTCGCTATTGCCCAAGAAAACGAAGCACGGCCGAATCGGG
GGATCGTTGTATCGGGCTTTGCGAGACGCCGGGGTGGATGTGGCGGCGCT
GGGCATACCGCGTGGTCGTCCACCTCGCACGGTGGTGGGGCAAAAAAGGC
CGAAACGGCCTACTCTATTGTCTTTGATCAAGTCAGGGGCAGAATTACCC
ATGGTTCCGGGGGCGCCACGACTACGAATTGTGAACATAGAGATGATGCC
CGAGGAGTATGAGGGGCAGGACGGGAAGGGAGGCTTGCAAGATCTTACCA
ACACGCAGCAGCGACGGCGCGTAGGATCGAGGAGCACTAGTAGGAGGAAA
GTCGGCGGCATGATGGGGAATAAGCGGGCGAAAGTGGCGGAGGCGGAGGG
GGGAAAGCAGGAAGGGGAAGGAGGGCAGAAGGGACCGATGGAGGGCTTGG
TTGCGGATGATGAGGCGGCGACGGGGTTGTTGCTTTTGCTGGGAGAGACA
AGCTCGTTGACCTGA
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protein sequence of NO08G01300.1

>NO08G01300.1-protein ID=NO08G01300.1-protein|Name=NO08G01300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MTIQAQDMPYSPVNPPQFSGDASTCENTNSNPKRDDNAPILTTPSATAMD
SQTTPNPALPANVTASARCIDAETSTHDDEAAISAASTDATTTNTTITAP
AAANATAAVTTAVSQQGDVKQFYFREHDENVVTLNLNSLLPKKTKHGRIG
GSLYRALRDAGVDVAALGIPRGRPPRTVVGQKRPKRPTLLSLIKSGAELP
MVPGAPRLRIVNIEMMPEEYEGQDGKGGLQDLTNTQQRRRVGSRSTSRRK
VGGMMGNKRAKVAEAEGGKQEGEGGQKGPMEGLVADDEAATGLLLLLGET
SSLT*
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mRNA from alignment at chr8:393973..394887-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01300.1 ID=NO08G01300.1|Name=NO08G01300.1|organism=Nannochloropsis oceanica|type=mRNA|length=915bp|location=Sequence derived from alignment at chr8:393973..394887- (Nannochloropsis oceanica)
ATGACCATCCAGGCACAAGACATGCCCTACAGCCCCGTAAATCCGCCGCA
ATTCTCAGGCGACGCCTCCACTTGTGAAAACACGAATTCAAACCCTAAAC
GGGACGACAATGCACCCATCCTGACCACGCCTTCCGCCACGGCAATGGAC
TCGCAGACCACGCCCAACCCTGCACTACCAGCTAATGTAACAGCCAGTGC
CAGGTGCATAGATGCAGAAACAAGCACCCACGATGACGAAGCAGCCATTT
CGGCCGCCAGCACCGACGCGACAACTACCAACACGACAATCACTGCTCCC
GCCGCCGCCAACGCCACCGCCGCGGTCACCACCGCTGTTTCGCAGCAAGG
CGATGTCAAGCAATTCTATTTTCGAGAACACGATGAGAATGTCGTTACGC
TGAATCTCAACTCGCTATTGCCCAAGAAAACGAAGCACGGCCGAATCGGG
GGATCGTTGTATCGGGCTTTGCGAGACGCCGGGGTGGATGTGGCGGCGCT
GGGCATACCGCGTGGTCGTCCACCTCGCACGGTGGTGGGGCAAAAAAGGC
CGAAACGGCCTACTCTATTGTCTTTGATCAAGTCAGGGGCAGAATTACCC
ATGGTTCCGGGGGCGCCACGACTACGAATTGTGAACATAGAGATGATGCC
CGAGGAGTATGAGGGGCAGGACGGGAAGGGAGGCTTGCAAGATCTTACCA
ACACGCAGCAGCGACGGCGCGTAGGATCGAGGAGCACTAGTAGGAGGAAA
GTCGGCGGCATGATGGGGAATAAGCGGGCGAAAGTGGCGGAGGCGGAGGG
GGGAAAGCAGGAAGGGGAAGGAGGGCAGAAGGGACCGATGGAGGGCTTGG
TTGCGGATGATGAGGCGGCGACGGGGTTGTTGCTTTTGCTGGGAGAGACA
AGCTCGTTGACCTGA
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Coding sequence (CDS) from alignment at chr8:393973..394887-

>NO08G01300.1 ID=NO08G01300.1|Name=NO08G01300.1|organism=Nannochloropsis oceanica|type=CDS|length=915bp|location=Sequence derived from alignment at chr8:393973..394887- (Nannochloropsis oceanica)
ATGACCATCCAGGCACAAGACATGCCCTACAGCCCCGTAAATCCGCCGCA
ATTCTCAGGCGACGCCTCCACTTGTGAAAACACGAATTCAAACCCTAAAC
GGGACGACAATGCACCCATCCTGACCACGCCTTCCGCCACGGCAATGGAC
TCGCAGACCACGCCCAACCCTGCACTACCAGCTAATGTAACAGCCAGTGC
CAGGTGCATAGATGCAGAAACAAGCACCCACGATGACGAAGCAGCCATTT
CGGCCGCCAGCACCGACGCGACAACTACCAACACGACAATCACTGCTCCC
GCCGCCGCCAACGCCACCGCCGCGGTCACCACCGCTGTTTCGCAGCAAGG
CGATGTCAAGCAATTCTATTTTCGAGAACACGATGAGAATGTCGTTACGC
TGAATCTCAACTCGCTATTGCCCAAGAAAACGAAGCACGGCCGAATCGGG
GGATCGTTGTATCGGGCTTTGCGAGACGCCGGGGTGGATGTGGCGGCGCT
GGGCATACCGCGTGGTCGTCCACCTCGCACGGTGGTGGGGCAAAAAAGGC
CGAAACGGCCTACTCTATTGTCTTTGATCAAGTCAGGGGCAGAATTACCC
ATGGTTCCGGGGGCGCCACGACTACGAATTGTGAACATAGAGATGATGCC
CGAGGAGTATGAGGGGCAGGACGGGAAGGGAGGCTTGCAAGATCTTACCA
ACACGCAGCAGCGACGGCGCGTAGGATCGAGGAGCACTAGTAGGAGGAAA
GTCGGCGGCATGATGGGGAATAAGCGGGCGAAAGTGGCGGAGGCGGAGGG
GGGAAAGCAGGAAGGGGAAGGAGGGCAGAAGGGACCGATGGAGGGCTTGG
TTGCGGATGATGAGGCGGCGACGGGGTTGTTGCTTTTGCTGGGAGAGACA
AGCTCGTTGACCTGA
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Synonyms
Publications