NO08G01270, NO08G01270 (gene) Nannochloropsis oceanica

Overview
NameNO08G01270
Unique NameNO08G01270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1649
Alignment locationchr8:387229..388877 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:387229..388877 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO08G01270 vs. NCBI_GenBank
Match: EWM26662.1 (hypothetical protein Naga_100001g33 [Nannochloropsis gaditana])

HSP 1 Score: 505.4 bits (1300), Expect = 2.000e-139
Identity = 272/460 (59.13%), Postives = 326/460 (70.87%), Query Frame = 0
Query:   33 WVALAA----FRQTLAAIWGHDNIE--VMPHTSLFSAMSRRSLPPMQRP---RPAFHLWPELNPHEHEDRNLGRSRVWQRFSNATG----HSDRVIE-----VDRKTDFQGFLKKERNALELFESNWALTWTRWKPFVSIGAKGMVGATMCLAGAHFGRCVVLFHTMRVTGWPAFQNALVELEKSYSAAREVVKAEVGKVVRPRELLQAVSYELKGVRCLIQESQKALEDGVISKAEAKEILRQAQVDKKKLEYESWCLNQALDSFAALSAAIDTNRLKDAGKGLYTGMVACVASAHSVTVRKLSLAFDLGSILSGNIACVMCSLMERIHSQEMARFLPPETRKFFKMSIQIAGMIQGLLIINTVVPKMSLRISSAALGAAWLSDAIAETVDPWLKAHEGWEPIAGRLPYAVLQVSLTVGGYYVQKHVYPGRFPLLVERFLAPLGFVESRLKDFNGLFKK 475
            W  +AA    + Q+ A  WG   ++   +   SL    +R S    +R    R AFHLW +   HEHE R L RS VWQRFSN TG     S   I+       RK    G L +E  AL+  E      W + KPFVS  AK + G TMCL GAH+ RC V+FHTMRVTGWPAF  A+ EL +SYSAAREVVK+EV KVVRP EL +AVSYELK V  LI+ESQK LEDG +S+ EA EI+R+AQ+DKK+LEYE+WCLNQALDS AAL AAID  RL++AGKGLYTG +AC AS+ S+TV KLSLAFDLG IL+ N++CV  +LM R HS+E+AR LPPETR+F K+S QI G IQGLLI+NTV+PK+SLRISSAALGAAWL+DAI E  DPW++AH+GW P+A  LPYAVLQV LT+GGYYVQK VYPG+ PL+VER L+PL F E RL   N +F K
Sbjct:   11 WFFIAALGSNWLQSHAGRWGDARLQAATLKPRSLLIRDARYSASNYRRASSHRLAFHLWGK--HHEHEGRALERSTVWQRFSNTTGDATNSSSTTIQQLGSFSTRKNPVFGILSQEDLALDKVEQCVCRCWGQCKPFVSTAAKALAGGTMCLFGAHYARCAVVFHTMRVTGWPAFHKAVQELFRSYSAAREVVKSEVSKVVRPGELFRAVSYELKSVHFLIKESQKKLEDGYLSRMEAMEIIRRAQIDKKRLEYEAWCLNQALDSVAALGAAIDLTRLREAGKGLYTGALACFASSSSMTVCKLSLAFDLGGILANNLSCVCATLMSRWHSKELARILPPETRRFIKLSFQIMGAIQGLLIVNTVLPKVSLRISSAALGAAWLTDAITEICDPWIQAHDGWNPMANHLPYAVLQVGLTIGGYYVQKTVYPGKIPLIVERVLSPLAFFEKRLNYLNSMFAK 468          
BLAST of NO08G01270 vs. NCBI_GenBank
Match: XP_005856013.1 (hypothetical protein NGA_2076900 [Nannochloropsis gaditana CCMP526] >EKU20350.1 hypothetical protein NGA_2076900 [Nannochloropsis gaditana CCMP526] >EWM26702.1 hypothetical protein Naga_100001g111 [Nannochloropsis gaditana])

HSP 1 Score: 213.4 bits (542), Expect = 1.500e-51
Identity = 133/384 (34.64%), Postives = 212/384 (55.21%), Query Frame = 0
Query:   84 ELNPHEHEDRNLGRSRVWQRFSNATGHSDRVIE-VDRKT-DFQGFLKKERNALELFESNWALTWTRWKPFVSIGAKGMVGATMCLAGAHFGRCVVLFHTMRVTGWPAFQNALVELEKSYSAAREVVKAEVGKVVRPRELLQAVSYELKGVRCLIQESQKALEDGVISKAEAKEILRQAQVDKKKLEYESWCLNQALDSFAALSAAIDTNRLKDAGKGLYTGMVACVASAHSVTVRKLSLAFDLGSILSGNIACVMCSLMERIHSQEMARFLPPETRKFFKMSIQIAGMIQGLLIINTVVPKMSLRISSAALGAAWLSDAIAETVDPWLKAHEGWEPIAGRLPYAVLQVSLTVGGYYVQKHVYPGRFPLLVERFLAPLGFVESRL 466
            E N    E  +L R R  Q    A    ++  + VD  T D + +L  E+  LE  E        +      +  KG VG +M L G HF   VV  HT+RVTG P  Q A  E    Y  AR  +K E   ++  ++LLQAV YE++  R L+ ES +A +DG ++++EA+E +R+A+++ ++L  +SW LNQA  S  A++AAID  ++KD   G+YT  +AC A+A S T+R LS+ FDL S++S +I   + ++ ERI   E+ ++LP ET+K   M++ +  +++GL++++ VVP+++L ISS+ALGA W++D + + +D       G   +  +  Y +     T  G   Q H      P L++  L P   +E+ L
Sbjct:   68 EFNEDFQEGIHLVRERALQVKEQAFKLQEKFTDIVDEATLDVREYLGLEKPYLEQLEDRMLNVLQKTAFARQVIVKGCVGLSMVLYGMHFSHLVVFIHTLRVTGLPVMQRAWNEFVDMYGTARRTIKREYPNMLHTKKLLQAVHYEIQSTRKLLHESAEAAKDGKVTESEAREAVRKAKLNLRELNEKSWILNQAFSSMHAVAAAIDFVKIKDLFSGIYTSALACFATASSSTLRGLSIGFDLASLISQHIDHAVQAVAERIPRLEVLQYLPRETQKLLGMTVSLVSVLKGLIVVHFVVPRLTLVISSSALGALWVTDMLVDVMDAGADG-PGTGLLNDKCLYLLSNFFWTAVGCMYQSHREGQDMPRLIQVLLFPAVRLETLL 450          
The following BLAST results are available for this feature:
BLAST of NO08G01270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM26662.12.000e-13959.13hypothetical protein Naga_100001g33 [Nannochlorops... [more]
XP_005856013.11.500e-5134.64hypothetical protein NGA_2076900 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008926NSK008926Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G01270.1NO08G01270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582172gene_3455Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g33gene3925Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G01270.1NO08G01270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G01270 ID=NO08G01270|Name=NO08G01270|organism=Nannochloropsis oceanica|type=gene|length=1649bp
ATGGTGCCACGACACCCTACACGGCAAGCTGAATACCACAATAGgtgggt
accacaatatgtgtcggtttttgccaaccgtgctatttatggccaaaatg
aaacgacaaatgtggcctcttttcgttcgttcaaccttaaccgactcccc
cttccccacattcagCATGACCTGCCCATACCGACGCGTTCCAAGACCAC
CAGCTCTGTTGCTTTTTTGGGTCGCATTGGCGGCCTTCCGGCAAACACTG
GCAGCGATTTGGGGCCATGACAACATTGgtaagcgcaggcatgtatatat
atatgacgtttccatgttctccagaccggtccacttggtactaactttcc
caaccctctcgtccctacttctgtttcctagAAGTCATGCCCCATACATC
CTTATTCTCTGCTATGTCACGACGCTCTCTTCCACCCATGCAGCGACCCC
GACCAGCATTTCATCTCTGGCCCGAACTAAACCCCCATGAGCACGAAGAC
CGCAATCTAGGACGTTCCAGAGTATGGCAACGATTTAGCAACGCGACGGG
GCACTCCGACAGGGTGATTGAGGTCGACAGGAAAACGGACTTCCAAGGTT
TCCTAAAGAAAGAGCGGAATGCCTTAGAACTTTTCGAGAGTAATTGGGCA
TTAACCTGGACGCGATGGAAACCCTTTGTTTCTATTGGAGCCAAGGGCAT
GGTCGGTGCGACGATGTGCCTTGCAGGGGCCCATTTTGGGAGATGCGTTG
TTTTGTTCCACACGATGCGCGTGACGGGCTGGCCTGCTTTTCAGAATGCG
TTGGTGGAGTTGGAGAAGAGCTACAGTGCCGCACGGGAGGTGGTAAAGGC
AGAGGTGGGTAAAGTGGTAAGGCCTCGGGAATTACTACAGGCCGTTTCAT
ATGAACTTAAGGGCGTGCGCTGCCTCATCCAAGAATCGCAAAAGGCGCTG
GAGGACGGGGTGATATCCAAGGCCGAAGCCAAGGAGATACTGAGGCAGGC
ACAGGTGGATAAGAAAAAGCTGGAGTACGAATCATGGTGCCTGAATCAGG
CGTTGGACTCATTTGCGGCTCTGAGCGCGGCTATTGACACAAATCGGCTC
AAGGATGCAGGAAAAGGACTGTATACTGGCATGGTTGCTTGTGTTGCTTC
GGCCCACAGCGTGACTGTGCGTAAATTGTCTTTAGCGTTTGATTTGGGGA
GTATTTTATCAGGGAATATTGCCTGTGTCATGTGTTCCCTGATGGAGCGC
ATACACAGTCAAGAGATGGCTCGTTTTTTGCCTCCCGAGACAAGAAAATT
TTTCAAAATGTCCATCCAAATCGCAGGAATGATTCAAGGTCTCTTGATCA
TTAACACCGTCGTACCCAAAATGAGTTTGCGCATCTCCAGTGCTGCCTTG
GGGGCGGCCTGGCTGTCGGATGCCATCGCTGAGACTGTTGATCCATGGTT
GAAGGCACATGAGGGATGGGAACCAATAGCCGGACGCTTGCCTTACGCGG
TTTTGCAAGTGAGCCTGACTGTTGGAGGGTACTATGTGCAAAAGCATGTA
TACCCAGGCAGGTTTCCCTTATTAGTGGAGCGTTTTTTGGCACCTTTGGG
CTTTGTGGAGAGTCGGCTGAAAGATTTCAATGGGTTGTTTAAAAAGTAG
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protein sequence of NO08G01270.1

>NO08G01270.1-protein ID=NO08G01270.1-protein|Name=NO08G01270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=475bp
MVPRHPTRQAEYHNSMTCPYRRVPRPPALLLFWVALAAFRQTLAAIWGHD
NIEVMPHTSLFSAMSRRSLPPMQRPRPAFHLWPELNPHEHEDRNLGRSRV
WQRFSNATGHSDRVIEVDRKTDFQGFLKKERNALELFESNWALTWTRWKP
FVSIGAKGMVGATMCLAGAHFGRCVVLFHTMRVTGWPAFQNALVELEKSY
SAAREVVKAEVGKVVRPRELLQAVSYELKGVRCLIQESQKALEDGVISKA
EAKEILRQAQVDKKKLEYESWCLNQALDSFAALSAAIDTNRLKDAGKGLY
TGMVACVASAHSVTVRKLSLAFDLGSILSGNIACVMCSLMERIHSQEMAR
FLPPETRKFFKMSIQIAGMIQGLLIINTVVPKMSLRISSAALGAAWLSDA
IAETVDPWLKAHEGWEPIAGRLPYAVLQVSLTVGGYYVQKHVYPGRFPLL
VERFLAPLGFVESRLKDFNGLFKK*
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Synonyms
Publications