NO08G01270.1, NO08G01270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01270.1
Unique NameNO08G01270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1425
Alignment locationchr8:387229..388877 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:387229..388877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G01270.1 vs.
Match: EWM26662.1 (hypothetical protein Naga_100001g33 [Nannochloropsis gaditana])

HSP 1 Score: 505.4 bits (1300), Expect = 2.000e-139
Identity = 270/460 (58.70%), Postives = 324/460 (70.43%), Query Frame = 0 
Query:   33 WVALAA----FRQTLAAIWGHDNIEV--MPHTSLFSAMSRRSLPPMQRP---RPAFHLWPELNPHEHEDRNLGRSRVWQRFSNATGHSDRVIEVD---------RKTDFQGFLKKERNALELFESNWALTWTRWKPFVSIGAKGMVGATMCLAGAHFGRCVVLFHTMRVTGWPAFQNALVELEKSYSAAREVVKAEVGKVVRPRELLQAVSYELKGVRCLIQESQKALEDGVISKAEAKEILRQAQVDKKKLEYESWCLNQALDSFAALSAAIDTNRLKDAGKGLYTGMVACVASAHSVTVRKLSLAFDLGSILSGNIACVMCSLMERIHSQEMARFLPPETRKFFKMSIQIAGMIQGLLIINTVVPKMSLRISSAALGAAWLSDAIAETVDPWLKAHEGWEPIAGRLPYAVLQVSLTVGGYYVQKHVYPGRFPLLVERFLAPLGFVESRLKDFNGLFKK 475
            W  +AA    + Q+ A  WG   ++   +   SL    +R S    +R    R AFHLW +   HEHE R L RS VWQRFSN TG +                RK    G L +E  AL+  E      W + KPFVS  AK + G TMCL GAH+ RC V+FHTMRVTGWPAF  A+ EL +SYSAAREVVK+EV KVVRP EL +AVSYELK V  LI+ESQK LEDG +S+ EA EI+R+AQ+DKK+LEYE+WCLNQALDS AAL AAID  RL++AGKGLYTG +AC AS+ S+TV KLSLAFDLG IL+ N++CV  +LM R HS+E+AR LPPETR+F K+S QI G IQGLLI+NTV+PK+SLRISSAALGAAWL+DAI E  DPW++AH+GW P+A  LPYAVLQV LT+GGYYVQK VYPG+ PL+VER L+PL F E RL   N +F K
Sbjct:   11 WFFIAALGSNWLQSHAGRWGDARLQAATLKPRSLLIRDARYSASNYRRASSHRLAFHLWGK--HHEHEGRALERSTVWQRFSNTTGDATNSSSTTIQQLGSFSTRKNPVFGILSQEDLALDKVEQCVCRCWGQCKPFVSTAAKALAGGTMCLFGAHYARCAVVFHTMRVTGWPAFHKAVQELFRSYSAAREVVKSEVSKVVRPGELFRAVSYELKSVHFLIKESQKKLEDGYLSRMEAMEIIRRAQIDKKRLEYEAWCLNQALDSVAALGAAIDLTRLREAGKGLYTGALACFASSSSMTVCKLSLAFDLGGILANNLSCVCATLMSRWHSKELARILPPETRRFIKLSFQIMGAIQGLLIVNTVLPKVSLRISSAALGAAWLTDAITEICDPWIQAHDGWNPMANHLPYAVLQVGLTIGGYYVQKTVYPGKIPLIVERVLSPLAFFEKRLNYLNSMFAK 468
The following BLAST results are available for this feature:
BLAST of NO08G01270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26662.12.000e-13958.70hypothetical protein Naga_100001g33 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01270NO08G01270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01270.1NO08G01270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01270.1.cds1NO08G01270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01270.1.cds2NO08G01270.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01270.1.cds3NO08G01270.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01270.1 ID=NO08G01270.1|Name=NO08G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1425bp
ATGGTGCCACGACACCCTACACGGCAAGCTGAATACCACAATAGCATGAC
CTGCCCATACCGACGCGTTCCAAGACCACCAGCTCTGTTGCTTTTTTGGG
TCGCATTGGCGGCCTTCCGGCAAACACTGGCAGCGATTTGGGGCCATGAC
AACATTGAAGTCATGCCCCATACATCCTTATTCTCTGCTATGTCACGACG
CTCTCTTCCACCCATGCAGCGACCCCGACCAGCATTTCATCTCTGGCCCG
AACTAAACCCCCATGAGCACGAAGACCGCAATCTAGGACGTTCCAGAGTA
TGGCAACGATTTAGCAACGCGACGGGGCACTCCGACAGGGTGATTGAGGT
CGACAGGAAAACGGACTTCCAAGGTTTCCTAAAGAAAGAGCGGAATGCCT
TAGAACTTTTCGAGAGTAATTGGGCATTAACCTGGACGCGATGGAAACCC
TTTGTTTCTATTGGAGCCAAGGGCATGGTCGGTGCGACGATGTGCCTTGC
AGGGGCCCATTTTGGGAGATGCGTTGTTTTGTTCCACACGATGCGCGTGA
CGGGCTGGCCTGCTTTTCAGAATGCGTTGGTGGAGTTGGAGAAGAGCTAC
AGTGCCGCACGGGAGGTGGTAAAGGCAGAGGTGGGTAAAGTGGTAAGGCC
TCGGGAATTACTACAGGCCGTTTCATATGAACTTAAGGGCGTGCGCTGCC
TCATCCAAGAATCGCAAAAGGCGCTGGAGGACGGGGTGATATCCAAGGCC
GAAGCCAAGGAGATACTGAGGCAGGCACAGGTGGATAAGAAAAAGCTGGA
GTACGAATCATGGTGCCTGAATCAGGCGTTGGACTCATTTGCGGCTCTGA
GCGCGGCTATTGACACAAATCGGCTCAAGGATGCAGGAAAAGGACTGTAT
ACTGGCATGGTTGCTTGTGTTGCTTCGGCCCACAGCGTGACTGTGCGTAA
ATTGTCTTTAGCGTTTGATTTGGGGAGTATTTTATCAGGGAATATTGCCT
GTGTCATGTGTTCCCTGATGGAGCGCATACACAGTCAAGAGATGGCTCGT
TTTTTGCCTCCCGAGACAAGAAAATTTTTCAAAATGTCCATCCAAATCGC
AGGAATGATTCAAGGTCTCTTGATCATTAACACCGTCGTACCCAAAATGA
GTTTGCGCATCTCCAGTGCTGCCTTGGGGGCGGCCTGGCTGTCGGATGCC
ATCGCTGAGACTGTTGATCCATGGTTGAAGGCACATGAGGGATGGGAACC
AATAGCCGGACGCTTGCCTTACGCGGTTTTGCAAGTGAGCCTGACTGTTG
GAGGGTACTATGTGCAAAAGCATGTATACCCAGGCAGGTTTCCCTTATTA
GTGGAGCGTTTTTTGGCACCTTTGGGCTTTGTGGAGAGTCGGCTGAAAGA
TTTCAATGGGTTGTTTAAAAAGTAG
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protein sequence of NO08G01270.1

>NO08G01270.1-protein ID=NO08G01270.1-protein|Name=NO08G01270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=475bp
MVPRHPTRQAEYHNSMTCPYRRVPRPPALLLFWVALAAFRQTLAAIWGHD
NIEVMPHTSLFSAMSRRSLPPMQRPRPAFHLWPELNPHEHEDRNLGRSRV
WQRFSNATGHSDRVIEVDRKTDFQGFLKKERNALELFESNWALTWTRWKP
FVSIGAKGMVGATMCLAGAHFGRCVVLFHTMRVTGWPAFQNALVELEKSY
SAAREVVKAEVGKVVRPRELLQAVSYELKGVRCLIQESQKALEDGVISKA
EAKEILRQAQVDKKKLEYESWCLNQALDSFAALSAAIDTNRLKDAGKGLY
TGMVACVASAHSVTVRKLSLAFDLGSILSGNIACVMCSLMERIHSQEMAR
FLPPETRKFFKMSIQIAGMIQGLLIINTVVPKMSLRISSAALGAAWLSDA
IAETVDPWLKAHEGWEPIAGRLPYAVLQVSLTVGGYYVQKHVYPGRFPLL
VERFLAPLGFVESRLKDFNGLFKK*
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mRNA from alignment at chr8:387229..388877+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01270.1 ID=NO08G01270.1|Name=NO08G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1649bp|location=Sequence derived from alignment at chr8:387229..388877+ (Nannochloropsis oceanica)
ATGGTGCCACGACACCCTACACGGCAAGCTGAATACCACAATAGGTGGGT
ACCACAATATGTGTCGGTTTTTGCCAACCGTGCTATTTATGGCCAAAATG
AAACGACAAATGTGGCCTCTTTTCGTTCGTTCAACCTTAACCGACTCCCC
CTTCCCCACATTCAGCATGACCTGCCCATACCGACGCGTTCCAAGACCAC
CAGCTCTGTTGCTTTTTTGGGTCGCATTGGCGGCCTTCCGGCAAACACTG
GCAGCGATTTGGGGCCATGACAACATTGGTAAGCGCAGGCATGTATATAT
ATATGACGTTTCCATGTTCTCCAGACCGGTCCACTTGGTACTAACTTTCC
CAACCCTCTCGTCCCTACTTCTGTTTCCTAGAAGTCATGCCCCATACATC
CTTATTCTCTGCTATGTCACGACGCTCTCTTCCACCCATGCAGCGACCCC
GACCAGCATTTCATCTCTGGCCCGAACTAAACCCCCATGAGCACGAAGAC
CGCAATCTAGGACGTTCCAGAGTATGGCAACGATTTAGCAACGCGACGGG
GCACTCCGACAGGGTGATTGAGGTCGACAGGAAAACGGACTTCCAAGGTT
TCCTAAAGAAAGAGCGGAATGCCTTAGAACTTTTCGAGAGTAATTGGGCA
TTAACCTGGACGCGATGGAAACCCTTTGTTTCTATTGGAGCCAAGGGCAT
GGTCGGTGCGACGATGTGCCTTGCAGGGGCCCATTTTGGGAGATGCGTTG
TTTTGTTCCACACGATGCGCGTGACGGGCTGGCCTGCTTTTCAGAATGCG
TTGGTGGAGTTGGAGAAGAGCTACAGTGCCGCACGGGAGGTGGTAAAGGC
AGAGGTGGGTAAAGTGGTAAGGCCTCGGGAATTACTACAGGCCGTTTCAT
ATGAACTTAAGGGCGTGCGCTGCCTCATCCAAGAATCGCAAAAGGCGCTG
GAGGACGGGGTGATATCCAAGGCCGAAGCCAAGGAGATACTGAGGCAGGC
ACAGGTGGATAAGAAAAAGCTGGAGTACGAATCATGGTGCCTGAATCAGG
CGTTGGACTCATTTGCGGCTCTGAGCGCGGCTATTGACACAAATCGGCTC
AAGGATGCAGGAAAAGGACTGTATACTGGCATGGTTGCTTGTGTTGCTTC
GGCCCACAGCGTGACTGTGCGTAAATTGTCTTTAGCGTTTGATTTGGGGA
GTATTTTATCAGGGAATATTGCCTGTGTCATGTGTTCCCTGATGGAGCGC
ATACACAGTCAAGAGATGGCTCGTTTTTTGCCTCCCGAGACAAGAAAATT
TTTCAAAATGTCCATCCAAATCGCAGGAATGATTCAAGGTCTCTTGATCA
TTAACACCGTCGTACCCAAAATGAGTTTGCGCATCTCCAGTGCTGCCTTG
GGGGCGGCCTGGCTGTCGGATGCCATCGCTGAGACTGTTGATCCATGGTT
GAAGGCACATGAGGGATGGGAACCAATAGCCGGACGCTTGCCTTACGCGG
TTTTGCAAGTGAGCCTGACTGTTGGAGGGTACTATGTGCAAAAGCATGTA
TACCCAGGCAGGTTTCCCTTATTAGTGGAGCGTTTTTTGGCACCTTTGGG
CTTTGTGGAGAGTCGGCTGAAAGATTTCAATGGGTTGTTTAAAAAGTAG
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Coding sequence (CDS) from alignment at chr8:387229..388877+

>NO08G01270.1 ID=NO08G01270.1|Name=NO08G01270.1|organism=Nannochloropsis oceanica|type=CDS|length=1425bp|location=Sequence derived from alignment at chr8:387229..388877+ (Nannochloropsis oceanica)
ATGGTGCCACGACACCCTACACGGCAAGCTGAATACCACAATAGCATGAC
CTGCCCATACCGACGCGTTCCAAGACCACCAGCTCTGTTGCTTTTTTGGG
TCGCATTGGCGGCCTTCCGGCAAACACTGGCAGCGATTTGGGGCCATGAC
AACATTGAAGTCATGCCCCATACATCCTTATTCTCTGCTATGTCACGACG
CTCTCTTCCACCCATGCAGCGACCCCGACCAGCATTTCATCTCTGGCCCG
AACTAAACCCCCATGAGCACGAAGACCGCAATCTAGGACGTTCCAGAGTA
TGGCAACGATTTAGCAACGCGACGGGGCACTCCGACAGGGTGATTGAGGT
CGACAGGAAAACGGACTTCCAAGGTTTCCTAAAGAAAGAGCGGAATGCCT
TAGAACTTTTCGAGAGTAATTGGGCATTAACCTGGACGCGATGGAAACCC
TTTGTTTCTATTGGAGCCAAGGGCATGGTCGGTGCGACGATGTGCCTTGC
AGGGGCCCATTTTGGGAGATGCGTTGTTTTGTTCCACACGATGCGCGTGA
CGGGCTGGCCTGCTTTTCAGAATGCGTTGGTGGAGTTGGAGAAGAGCTAC
AGTGCCGCACGGGAGGTGGTAAAGGCAGAGGTGGGTAAAGTGGTAAGGCC
TCGGGAATTACTACAGGCCGTTTCATATGAACTTAAGGGCGTGCGCTGCC
TCATCCAAGAATCGCAAAAGGCGCTGGAGGACGGGGTGATATCCAAGGCC
GAAGCCAAGGAGATACTGAGGCAGGCACAGGTGGATAAGAAAAAGCTGGA
GTACGAATCATGGTGCCTGAATCAGGCGTTGGACTCATTTGCGGCTCTGA
GCGCGGCTATTGACACAAATCGGCTCAAGGATGCAGGAAAAGGACTGTAT
ACTGGCATGGTTGCTTGTGTTGCTTCGGCCCACAGCGTGACTGTGCGTAA
ATTGTCTTTAGCGTTTGATTTGGGGAGTATTTTATCAGGGAATATTGCCT
GTGTCATGTGTTCCCTGATGGAGCGCATACACAGTCAAGAGATGGCTCGT
TTTTTGCCTCCCGAGACAAGAAAATTTTTCAAAATGTCCATCCAAATCGC
AGGAATGATTCAAGGTCTCTTGATCATTAACACCGTCGTACCCAAAATGA
GTTTGCGCATCTCCAGTGCTGCCTTGGGGGCGGCCTGGCTGTCGGATGCC
ATCGCTGAGACTGTTGATCCATGGTTGAAGGCACATGAGGGATGGGAACC
AATAGCCGGACGCTTGCCTTACGCGGTTTTGCAAGTGAGCCTGACTGTTG
GAGGGTACTATGTGCAAAAGCATGTATACCCAGGCAGGTTTCCCTTATTA
GTGGAGCGTTTTTTGGCACCTTTGGGCTTTGTGGAGAGTCGGCTGAAAGA
TTTCAATGGGTTGTTTAAAAAGTAG
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Synonyms
Publications