NO08G01200, NO08G01200 (gene) Nannochloropsis oceanica

Overview
NameNO08G01200
Unique NameNO08G01200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1594
Alignment locationchr8:371995..373588 +

Link to JBrowse

Properties
Property NameValue
DescriptionReceptor-interacting serine-threonine kinase 4
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:371995..373588 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0016301kinase activity
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
BLAST of NO08G01200 vs. NCBI_GenBank
Match: XP_005852732.1 (receptor-interacting serine-threonine kinase 4, partial [Nannochloropsis gaditana CCMP526] >XP_005856381.1 receptor-interacting serine-threonine kinase 4, partial [Nannochloropsis gaditana CCMP526] >EKU19968.1 receptor-interacting serine-threonine kinase 4, partial [Nannochloropsis gaditana CCMP526] >EKU23099.1 receptor-interacting serine-threonine kinase 4, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 258.8 bits (660), Expect = 2.600e-65
Identity = 125/189 (66.14%), Postives = 151/189 (79.89%), Query Frame = 0
Query:   56 MLNALNDALAEGKVHTVTCLLQAHPLLVSTRMHAGGWTPLLLASYYDQPKVVEIILGHAGVGVNDVDNDIFRRSALHWLAARGQAVLIFKLVKQHGASVDLRDAENNTPLHRACKANQPMTVMMLLMLGADPEARTEDEEVPAEVTDSSLARAFIRLFQKSCLKSTPVHKGRIGGEMHMAPVSSTSSTS 245
            ML ALNDA+  G VH V+CLL+AHPLLVSTRMH GGWTPLLLASYYDQP+VVE+IL  AGVGV+DVD DIFRR++LHWLAA GQ +LI K+VKQHGASVD+RDAE NTPLHRACKANQ +TV MLLMLGADP ARTE+ ++P++VT+S + R+ +RL+Q SCL+ +   +GR     +     ST   S
Sbjct:   25 MLKALNDAVTAGSVHKVSCLLRAHPLLVSTRMHEGGWTPLLLASYYDQPEVVELILNRAGVGVDDVDQDIFRRTSLHWLAAHGQPLLILKMVKQHGASVDIRDAEQNTPLHRACKANQALTVAMLLMLGADPLARTEEGDLPSDVTESGMTRSCMRLWQTSCLRLSSFKQGRTQKACNDYTTKSTQDAS 213          
BLAST of NO08G01200 vs. NCBI_GenBank
Match: EWM26710.1 (ankyrin domain protein [Nannochloropsis gaditana])

HSP 1 Score: 257.7 bits (657), Expect = 5.700e-65
Identity = 121/172 (70.35%), Postives = 146/172 (84.88%), Query Frame = 0
Query:   56 MLNALNDALAEGKVHTVTCLLQAHPLLVSTRMHAGGWTPLLLASYYDQPKVVEIILGHAGVGVNDVDNDIFRRSALHWLAARGQAVLIFKLVKQHGASVDLRDAENNTPLHRACKANQPMTVMMLLMLGADPEARTEDEEVPAEVTDSSLARAFIRLFQKSCLKSTPVHKGR 228
            ML ALNDA+  G VH V+CLL+AHPLLVSTRMH GGWTPLLLASYYDQP+VVE+IL  AGVGV+DVD DIFRR++LHWLAA G  +LI K+VKQHGASVD+RDAE NTPLHRACKANQ +TV MLLMLGADP ARTE+ ++P++VT+S + R+ +RL+Q SCL+ +   +GR
Sbjct:    1 MLKALNDAVTAGSVHKVSCLLRAHPLLVSTRMHEGGWTPLLLASYYDQPEVVELILNRAGVGVDDVDQDIFRRTSLHWLAAHGHPLLILKMVKQHGASVDIRDAEQNTPLHRACKANQALTVAMLLMLGADPLARTEEGDLPSDVTESGMTRSCMRLWQTSCLRLSSFKQGR 172          
BLAST of NO08G01200 vs. NCBI_GenBank
Match: AMW06202.1 (hypothetical protein GEMMAAP_18250 [Gemmatimonas phototrophica])

HSP 1 Score: 67.4 bits (163), Expect = 1.100e-7
Identity = 43/130 (33.08%), Postives = 64/130 (49.23%), Query Frame = 0
Query:   86 RMHAGGWTPLLLASYYDQPKVVEIILGHAGVGVNDVDNDIFRRSALHWLAARGQAVLIFKLVKQHGASVDLRDAENNTPLHRACKANQPMTVMMLLMLGADPEARTEDEEVPAEVTDSSLARAFIRLFQK 216
            R  + GW+PL LA+++ Q   V +++ H G  ++    +  R + LH   A      I K +   GA+V  R A+N TPLH A          +L+  GADP A  ED   PA++   + AR F  L +K
Sbjct:   91 RRSSDGWSPLHLAAFFGQDDAVALLIDH-GAPLDAHSTNATRNTPLHAALAGATKPSIVKRLIFAGANVASRGAQNITPLHLAASRGDGTLCELLVARGADPHAVMEDGTTPAQL---ATARGFADLGEK 216          
BLAST of NO08G01200 vs. NCBI_GenBank
Match: WP_082821597.1 (ankyrin repeat domain-containing protein [Gemmatimonas phototrophica])

HSP 1 Score: 67.4 bits (163), Expect = 1.100e-7
Identity = 43/130 (33.08%), Postives = 64/130 (49.23%), Query Frame = 0
Query:   86 RMHAGGWTPLLLASYYDQPKVVEIILGHAGVGVNDVDNDIFRRSALHWLAARGQAVLIFKLVKQHGASVDLRDAENNTPLHRACKANQPMTVMMLLMLGADPEARTEDEEVPAEVTDSSLARAFIRLFQK 216
            R  + GW+PL LA+++ Q   V +++ H G  ++    +  R + LH   A      I K +   GA+V  R A+N TPLH A          +L+  GADP A  ED   PA++   + AR F  L +K
Sbjct:  164 RRSSDGWSPLHLAAFFGQDDAVALLIDH-GAPLDAHSTNATRNTPLHAALAGATKPSIVKRLIFAGANVASRGAQNITPLHLAASRGDGTLCELLVARGADPHAVMEDGTTPAQL---ATARGFADLGEK 289          
BLAST of NO08G01200 vs. NCBI_GenBank
Match: POM72301.1 (LOW QUALITY PROTEIN: Serine/threonine protein kinase, partial [Phytophthora palmivora var. palmivora])

HSP 1 Score: 65.1 bits (157), Expect = 5.500e-7
Identity = 43/109 (39.45%), Postives = 58/109 (53.21%), Query Frame = 0
Query:   91 GWTPLLLASYYDQPKVVEIILGHAGVGVNDVD-NDIFRRSALHWLAARGQAVLIFKLVKQHGA-SVDLRDAENNTPLHRACKANQPMTVMMLLMLGADPEARTEDEEVP 198
            GWTPL+LAS+Y    VV  +L H      DVD  D    +AL + AA G+ + I KL+ QHG+ SV+  +    TPL  A + +     M LL +GA P A+T     P
Sbjct:  169 GWTPLILASWYGHISVVRYLLNHGA----DVDAKDAGGSTALRFAAAEGR-LKIAKLLVQHGSLSVNEPEMHGRTPLWFAVQNDHLQIAMWLLRIGAQPNAKTSAGSTP 272          
BLAST of NO08G01200 vs. NCBI_GenBank
Match: OAQ27703.1 (hypothetical protein K457DRAFT_21040 [Mortierella elongata AG-77])

HSP 1 Score: 64.3 bits (155), Expect = 9.300e-7
Identity = 42/115 (36.52%), Postives = 59/115 (51.30%), Query Frame = 0
Query:   91 GWTPLLLASYYDQPKVVEIILGHAGVGVNDVDNDIFRRSALHWLAARGQAVLIFKLVKQHGASVDLRDA-ENNTPLHRACKANQPMTVMMLLMLGADPEARTEDEEVPAEVTDSS 205
            GWTPLL  + +D   VV+ +L    V V  VD+  +  S LH    RG   ++  L  Q    +DL+   + +TPL  AC++N    V  LL  GA+PE R    E PA++T  S
Sbjct:  744 GWTPLLKWALHDYAAVVKCLLETGRVNVLMVDSRGY--SPLHMACLRGNLEMVQML--QAYTPIDLQSVIDGSTPLQLACQSNSASVVEFLLQSGANPELREWSNEAPADMTTDS 854          
BLAST of NO08G01200 vs. NCBI_GenBank
Match: GBG31624.1 (Ankyrin repeat domain-containing protein 1 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 64.3 bits (155), Expect = 9.300e-7
Identity = 35/102 (34.31%), Postives = 51/102 (50.00%), Query Frame = 0
Query:  113 HAGVGVNDVDNDIFRRSALHWLAARGQAVLIFKLVKQHGASVDLRDAENNTPLHRACKANQPMTVMMLLMLGADPEARTEDEEVPAEVTDS-SLARAFIRLF 214
            H GV  N  D      + LHW A+ GQ   + + +   GA ++  + +  TP+H AC+     T   LL LGA P+AR  D  +P E+  + +L  AF  LF
Sbjct:  144 HGGVNANADDGTAAHATILHWAASFGQPRELLQELVNAGAVLEACNDKKRTPMHEACEGGHVETASALLELGASPDARDVDGHLPVELAKTQALRSAFAALF 245          
The following BLAST results are available for this feature:
BLAST of NO08G01200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
XP_005852732.12.600e-6566.14receptor-interacting serine-threonine kinase 4, pa... [more]
EWM26710.15.700e-6570.35ankyrin domain protein [Nannochloropsis gaditana][more]
AMW06202.11.100e-733.08hypothetical protein GEMMAAP_18250 [Gemmatimonas p... [more]
WP_082821597.11.100e-733.08ankyrin repeat domain-containing protein [Gemmatim... [more]
POM72301.15.500e-739.45LOW QUALITY PROTEIN: Serine/threonine protein kina... [more]
OAQ27703.19.300e-736.52hypothetical protein K457DRAFT_21040 [Mortierella ... [more]
GBG31624.19.300e-734.31Ankyrin repeat domain-containing protein 1 [Aurant... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G01200.1NO08G01200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582155gene_3449Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G01200.1NO08G01200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G01200 ID=NO08G01200|Name=NO08G01200|organism=Nannochloropsis oceanica|type=gene|length=1594bp
GCGGGGGCATCGAGAGCTTGTCTGAGGCCTTGCGTTTCAAAACGAGTGCC
TGAGAGCACGTGTGCTTCTCGGCTGCTCGGAGTCATGTCCATAAAGCTCC
GGCTGCTCTAAAAACCCGAGTCAAAAGGACAGCCGCTTTGCATCAGAGGT
GCACTTTGAGAAGGTATTCTAGGCACTTCCTTGTGTACACCGTATCACTT
CGGACGGAATGCTGAAAGGGTGGGCTCTTCGTGCCCCTTGTGGGTCTTTA
AAAAGACATTTCTTCCGCTCCTTCACTTTTGCACGCATCTCGGACCCCTG
AACTGAACGTCATCACATGTGTCCTCATCCTCTCTCCTCCCTTGAGCACA
TACGTTTAGATGCAACCTAACAGTTGTGCCACAATCGACAAGCCAATCCT
CTCTATCCGCTGCGCATTGGGCTCCATTCGTCTTCTTTCCTTGCACTCAA
TCCTCCCGTCCATCATACAAACTCCAACTACAGATGCGGCATTGCTATCG
AGCCTCACTACCCTAGAGCAAGACATGCTCAACGCCCTGAATGATGCCCT
CGCCGAGGGAAAAGTTCACACTGTAACCTGTCTATTACAAGCCCACCCAT
TGCTGGTCTCCACGCGCATGCACGCCGGGGGCTGGACTCCCTTGCTCCTG
GCCAGCTACTACGACCAACCGAAAGTAGTGGAGATCATCCTAGGCCACGC
TGGTGTAGGTGTAAACGATGTAGATAACGATATTTTTCGTCGAAGCGCCT
TGCATTGGCTTGCAGCACGGGGACAGGCAGTCTTGATCTTTAAACTGGTG
AAGCAGCACGGCGCCTCGGTGGACCTGCGCGATGCCGAAAATAATACGCC
GTTGCACCGGGCCTGTAAAGCCAACCAACCCATGACAGTTATGATGCTCT
TAATGCTGGGCGCAGACCCGGAAGCGCGCACGGAGGATGAAGAAGTTCCG
GCTGAAGTCACCGATTCCTCCCTCGCCCGTGCCTTCATTCGCCTTTTTCA
AAAAAGCTGCCTCAAGTCCACCCCAGTACACAAAGGAAGAATTGGAGGAG
AGATGCACATGGCGCCTGTCAGCAGCACGAGCAGCACGAGTTGCAGCTGC
GATTTGAGCAATAGCAAGATAGACGAGAGGCGGTCGTTGCAACCGCAGCA
GGAGCACCAGAAGCAGCAGCACGGTGAGGAATGCCTGGACAAGATTAGTT
GTAGCAGTGGCAGCAGCAGCAGCAGTAGTAGTAGCAGCAGCAGTCAATTA
CGTTCGGAATCGCCTTGCACGCGGTCTACGGCGAGCGCGAGCTCATGGGG
GGAGAATCAGGCCAAGGAAGGGCAGGAGGAAGGGAAGGCAGGGATGGAGG
ATGAAACAACGACTTTGTTGAGAGGCAAAGTAGCGCCGTCGGGGAAGAAA
AACGGAAAGAGGCTCGCAACGACAAAGACATTGATTAATATGTTTGAAGG
TGATAGAGGGAGACCGAGATCGATGGGTGGGTGTGTAGGTAGGGAACACC
AGTGAAATTCAGTAACAAATGTAGCATTGGTCCATTTAATCAGAAGGATA
ACAAGAAAGGGAACAAATCACAAACATATATTCGTTGGTGGCAT
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protein sequence of NO08G01200.1

>NO08G01200.1-protein ID=NO08G01200.1-protein|Name=NO08G01200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MQPNSCATIDKPILSIRCALGSIRLLSLHSILPSIIQTPTTDAALLSSLT
TLEQDMLNALNDALAEGKVHTVTCLLQAHPLLVSTRMHAGGWTPLLLASY
YDQPKVVEIILGHAGVGVNDVDNDIFRRSALHWLAARGQAVLIFKLVKQH
GASVDLRDAENNTPLHRACKANQPMTVMMLLMLGADPEARTEDEEVPAEV
TDSSLARAFIRLFQKSCLKSTPVHKGRIGGEMHMAPVSSTSSTSCSCDLS
NSKIDERRSLQPQQEHQKQQHGEECLDKISCSSGSSSSSSSSSSSQLRSE
SPCTRSTASASSWGENQAKEGQEEGKAGMEDETTTLLRGKVAPSGKKNGK
RLATTKTLINMFEGDRGRPRSMGGCVGREHQ*
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Synonyms
Publications