NO08G01200.1, NO08G01200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01200.1
Unique NameNO08G01200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1594
Alignment locationchr8:371995..373588 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:371995..373588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G01200.1 vs.
Match: XP_005852732.1 (receptor-interacting serine-threonine kinase 4, partial [Nannochloropsis gaditana CCMP526]; XP_005856381.1 receptor-interacting serine-threonine kinase 4, partial [Nannochloropsis gaditana CCMP526]; EKU19968.1 receptor-interacting serine-threonine kinase 4, partial [Nannochloropsis gaditana CCMP526]; EKU23099.1 receptor-interacting serine-threonine kinase 4, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 254.2 bits (648), Expect = 6.300e-64
Identity = 149/282 (52.84%), Postives = 188/282 (66.67%), Query Frame = 0 
Query:   56 MLNALNDALAEGKVHTVTCLLQAHPLLVSTRMHAGGWTPLLLASYYDQPKVVEIILGHAGVGVNDVDNDIFRRSALHWLAARGQAVLIFKLVKQHGASVDLRDAENNTPLHRACKANQPMTVMMLLMLGADPEARTEDEEVPAEVTDSSLARAFIRLFQKSCLKSTPVHKGRIGGEMHMAPVSSTSSTSCSCDLSNSKIDERRSLQPQQEHQKQQHGEECLDKISCSSGSSSSSSSSSSSQLRSESPCTRSTASASSWGENQAKEGQEEGKAGMEDETTTLL 338
            ML ALNDA+  G VH V+CLL+AHPLLVSTRMH GGWTPLLLASYYDQP+VVE+IL  AGVGV+DVD DIFRR++LHWLAA GQ +LI K+VKQHGASVD+RDAE NTPLHRACKANQ +TV MLLMLGADP ARTE+ ++P++VT+S + R+ +RL+Q SCL+ +   +GR               T  +C+   +K          Q+  +++ GE   +    +  ++         Q RSES  TRST S  SW E++   G E      EDE +TLL
Sbjct:   25 MLKALNDAVTAGSVHKVSCLLRAHPLLVSTRMHEGGWTPLLLASYYDQPEVVELILNRAGVGVDDVDQDIFRRTSLHWLAAHGQPLLILKMVKQHGASVDIRDAEQNTPLHRACKANQALTVAMLLMLGADPLARTEEGDLPSDVTESGMTRSCMRLWQTSCLRLSSFKQGR---------------TQKACNDYTTK--------STQDASEKKVGENPFNSFVLAE-TNCREKEQGLFQFRSESLGTRSTESVLSW-EDENAGGSEAPSLEEEDEASTLL 281
The following BLAST results are available for this feature:
BLAST of NO08G01200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852732.16.300e-6452.84receptor-interacting serine-threonine kinase 4, pa... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01200NO08G01200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01200.1NO08G01200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01200.1.cds1NO08G01200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01200.1 ID=NO08G01200.1|Name=NO08G01200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1594bp
GCGGGGGCATCGAGAGCTTGTCTGAGGCCTTGCGTTTCAAAACGAGTGCC
TGAGAGCACGTGTGCTTCTCGGCTGCTCGGAGTCATGTCCATAAAGCTCC
GGCTGCTCTAAAAACCCGAGTCAAAAGGACAGCCGCTTTGCATCAGAGGT
GCACTTTGAGAAGGTATTCTAGGCACTTCCTTGTGTACACCGTATCACTT
CGGACGGAATGCTGAAAGGGTGGGCTCTTCGTGCCCCTTGTGGGTCTTTA
AAAAGACATTTCTTCCGCTCCTTCACTTTTGCACGCATCTCGGACCCCTG
AACTGAACGTCATCACATGTGTCCTCATCCTCTCTCCTCCCTTGAGCACA
TACGTTTAGATGCAACCTAACAGTTGTGCCACAATCGACAAGCCAATCCT
CTCTATCCGCTGCGCATTGGGCTCCATTCGTCTTCTTTCCTTGCACTCAA
TCCTCCCGTCCATCATACAAACTCCAACTACAGATGCGGCATTGCTATCG
AGCCTCACTACCCTAGAGCAAGACATGCTCAACGCCCTGAATGATGCCCT
CGCCGAGGGAAAAGTTCACACTGTAACCTGTCTATTACAAGCCCACCCAT
TGCTGGTCTCCACGCGCATGCACGCCGGGGGCTGGACTCCCTTGCTCCTG
GCCAGCTACTACGACCAACCGAAAGTAGTGGAGATCATCCTAGGCCACGC
TGGTGTAGGTGTAAACGATGTAGATAACGATATTTTTCGTCGAAGCGCCT
TGCATTGGCTTGCAGCACGGGGACAGGCAGTCTTGATCTTTAAACTGGTG
AAGCAGCACGGCGCCTCGGTGGACCTGCGCGATGCCGAAAATAATACGCC
GTTGCACCGGGCCTGTAAAGCCAACCAACCCATGACAGTTATGATGCTCT
TAATGCTGGGCGCAGACCCGGAAGCGCGCACGGAGGATGAAGAAGTTCCG
GCTGAAGTCACCGATTCCTCCCTCGCCCGTGCCTTCATTCGCCTTTTTCA
AAAAAGCTGCCTCAAGTCCACCCCAGTACACAAAGGAAGAATTGGAGGAG
AGATGCACATGGCGCCTGTCAGCAGCACGAGCAGCACGAGTTGCAGCTGC
GATTTGAGCAATAGCAAGATAGACGAGAGGCGGTCGTTGCAACCGCAGCA
GGAGCACCAGAAGCAGCAGCACGGTGAGGAATGCCTGGACAAGATTAGTT
GTAGCAGTGGCAGCAGCAGCAGCAGTAGTAGTAGCAGCAGCAGTCAATTA
CGTTCGGAATCGCCTTGCACGCGGTCTACGGCGAGCGCGAGCTCATGGGG
GGAGAATCAGGCCAAGGAAGGGCAGGAGGAAGGGAAGGCAGGGATGGAGG
ATGAAACAACGACTTTGTTGAGAGGCAAAGTAGCGCCGTCGGGGAAGAAA
AACGGAAAGAGGCTCGCAACGACAAAGACATTGATTAATATGTTTGAAGG
TGATAGAGGGAGACCGAGATCGATGGGTGGGTGTGTAGGTAGGGAACACC
AGTGAAATTCAGTAACAAATGTAGCATTGGTCCATTTAATCAGAAGGATA
ACAAGAAAGGGAACAAATCACAAACATATATTCGTTGGTGGCAT
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protein sequence of NO08G01200.1

>NO08G01200.1-protein ID=NO08G01200.1-protein|Name=NO08G01200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MQPNSCATIDKPILSIRCALGSIRLLSLHSILPSIIQTPTTDAALLSSLT
TLEQDMLNALNDALAEGKVHTVTCLLQAHPLLVSTRMHAGGWTPLLLASY
YDQPKVVEIILGHAGVGVNDVDNDIFRRSALHWLAARGQAVLIFKLVKQH
GASVDLRDAENNTPLHRACKANQPMTVMMLLMLGADPEARTEDEEVPAEV
TDSSLARAFIRLFQKSCLKSTPVHKGRIGGEMHMAPVSSTSSTSCSCDLS
NSKIDERRSLQPQQEHQKQQHGEECLDKISCSSGSSSSSSSSSSSQLRSE
SPCTRSTASASSWGENQAKEGQEEGKAGMEDETTTLLRGKVAPSGKKNGK
RLATTKTLINMFEGDRGRPRSMGGCVGREHQ*
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mRNA from alignment at chr8:371995..373588+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01200.1 ID=NO08G01200.1|Name=NO08G01200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1594bp|location=Sequence derived from alignment at chr8:371995..373588+ (Nannochloropsis oceanica)
GCGGGGGCATCGAGAGCTTGTCTGAGGCCTTGCGTTTCAAAACGAGTGCC
TGAGAGCACGTGTGCTTCTCGGCTGCTCGGAGTCATGTCCATAAAGCTCC
GGCTGCTCTAAAAACCCGAGTCAAAAGGACAGCCGCTTTGCATCAGAGGT
GCACTTTGAGAAGGTATTCTAGGCACTTCCTTGTGTACACCGTATCACTT
CGGACGGAATGCTGAAAGGGTGGGCTCTTCGTGCCCCTTGTGGGTCTTTA
AAAAGACATTTCTTCCGCTCCTTCACTTTTGCACGCATCTCGGACCCCTG
AACTGAACGTCATCACATGTGTCCTCATCCTCTCTCCTCCCTTGAGCACA
TACGTTTAGATGCAACCTAACAGTTGTGCCACAATCGACAAGCCAATCCT
CTCTATCCGCTGCGCATTGGGCTCCATTCGTCTTCTTTCCTTGCACTCAA
TCCTCCCGTCCATCATACAAACTCCAACTACAGATGCGGCATTGCTATCG
AGCCTCACTACCCTAGAGCAAGACATGCTCAACGCCCTGAATGATGCCCT
CGCCGAGGGAAAAGTTCACACTGTAACCTGTCTATTACAAGCCCACCCAT
TGCTGGTCTCCACGCGCATGCACGCCGGGGGCTGGACTCCCTTGCTCCTG
GCCAGCTACTACGACCAACCGAAAGTAGTGGAGATCATCCTAGGCCACGC
TGGTGTAGGTGTAAACGATGTAGATAACGATATTTTTCGTCGAAGCGCCT
TGCATTGGCTTGCAGCACGGGGACAGGCAGTCTTGATCTTTAAACTGGTG
AAGCAGCACGGCGCCTCGGTGGACCTGCGCGATGCCGAAAATAATACGCC
GTTGCACCGGGCCTGTAAAGCCAACCAACCCATGACAGTTATGATGCTCT
TAATGCTGGGCGCAGACCCGGAAGCGCGCACGGAGGATGAAGAAGTTCCG
GCTGAAGTCACCGATTCCTCCCTCGCCCGTGCCTTCATTCGCCTTTTTCA
AAAAAGCTGCCTCAAGTCCACCCCAGTACACAAAGGAAGAATTGGAGGAG
AGATGCACATGGCGCCTGTCAGCAGCACGAGCAGCACGAGTTGCAGCTGC
GATTTGAGCAATAGCAAGATAGACGAGAGGCGGTCGTTGCAACCGCAGCA
GGAGCACCAGAAGCAGCAGCACGGTGAGGAATGCCTGGACAAGATTAGTT
GTAGCAGTGGCAGCAGCAGCAGCAGTAGTAGTAGCAGCAGCAGTCAATTA
CGTTCGGAATCGCCTTGCACGCGGTCTACGGCGAGCGCGAGCTCATGGGG
GGAGAATCAGGCCAAGGAAGGGCAGGAGGAAGGGAAGGCAGGGATGGAGG
ATGAAACAACGACTTTGTTGAGAGGCAAAGTAGCGCCGTCGGGGAAGAAA
AACGGAAAGAGGCTCGCAACGACAAAGACATTGATTAATATGTTTGAAGG
TGATAGAGGGAGACCGAGATCGATGGGTGGGTGTGTAGGTAGGGAACACC
AGTGAAATTCAGTAACAAATGTAGCATTGGTCCATTTAATCAGAAGGATA
ACAAGAAAGGGAACAAATCACAAACATATATTCGTTGGTGGCAT
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Coding sequence (CDS) from alignment at chr8:371995..373588+

>NO08G01200.1 ID=NO08G01200.1|Name=NO08G01200.1|organism=Nannochloropsis oceanica|type=CDS|length=1146bp|location=Sequence derived from alignment at chr8:371995..373588+ (Nannochloropsis oceanica)
ATGCAACCTAACAGTTGTGCCACAATCGACAAGCCAATCCTCTCTATCCG
CTGCGCATTGGGCTCCATTCGTCTTCTTTCCTTGCACTCAATCCTCCCGT
CCATCATACAAACTCCAACTACAGATGCGGCATTGCTATCGAGCCTCACT
ACCCTAGAGCAAGACATGCTCAACGCCCTGAATGATGCCCTCGCCGAGGG
AAAAGTTCACACTGTAACCTGTCTATTACAAGCCCACCCATTGCTGGTCT
CCACGCGCATGCACGCCGGGGGCTGGACTCCCTTGCTCCTGGCCAGCTAC
TACGACCAACCGAAAGTAGTGGAGATCATCCTAGGCCACGCTGGTGTAGG
TGTAAACGATGTAGATAACGATATTTTTCGTCGAAGCGCCTTGCATTGGC
TTGCAGCACGGGGACAGGCAGTCTTGATCTTTAAACTGGTGAAGCAGCAC
GGCGCCTCGGTGGACCTGCGCGATGCCGAAAATAATACGCCGTTGCACCG
GGCCTGTAAAGCCAACCAACCCATGACAGTTATGATGCTCTTAATGCTGG
GCGCAGACCCGGAAGCGCGCACGGAGGATGAAGAAGTTCCGGCTGAAGTC
ACCGATTCCTCCCTCGCCCGTGCCTTCATTCGCCTTTTTCAAAAAAGCTG
CCTCAAGTCCACCCCAGTACACAAAGGAAGAATTGGAGGAGAGATGCACA
TGGCGCCTGTCAGCAGCACGAGCAGCACGAGTTGCAGCTGCGATTTGAGC
AATAGCAAGATAGACGAGAGGCGGTCGTTGCAACCGCAGCAGGAGCACCA
GAAGCAGCAGCACGGTGAGGAATGCCTGGACAAGATTAGTTGTAGCAGTG
GCAGCAGCAGCAGCAGTAGTAGTAGCAGCAGCAGTCAATTACGTTCGGAA
TCGCCTTGCACGCGGTCTACGGCGAGCGCGAGCTCATGGGGGGAGAATCA
GGCCAAGGAAGGGCAGGAGGAAGGGAAGGCAGGGATGGAGGATGAAACAA
CGACTTTGTTGAGAGGCAAAGTAGCGCCGTCGGGGAAGAAAAACGGAAAG
AGGCTCGCAACGACAAAGACATTGATTAATATGTTTGAAGGTGATAGAGG
GAGACCGAGATCGATGGGTGGGTGTGTAGGTAGGGAACACCAGTGA
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Synonyms
Publications