NO08G01110, NO08G01110 (gene) Nannochloropsis oceanica

Overview
NameNO08G01110
Unique NameNO08G01110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1365
Alignment locationchr8:352470..353834 -

Link to JBrowse

Properties
Property NameValue
DescriptionNucleic acid-binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:352470..353834 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR003029Rbsml_prot_S1_RNA-bd_dom
IPR022967S1_dom
Homology
BLAST of NO08G01110 vs. NCBI_GenBank
Match: EWM26746.1 (Nucleic acid-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 511.9 bits (1317), Expect = 2.000e-141
Identity = 267/394 (67.77%), Postives = 318/394 (80.71%), Query Frame = 0
Query:    9 VLMVVYLATGAQTF---FVRPTMTMTTMRVPHEAPLRRHSGVPVASPGRLSLASLQVNQQLTGSVVSIYDGPAGHRKLFVDVGITRTDKQGKYFPVFGMVRLQGPYQNRTYAYGQRLDVLYVDEVYLGAARLLLRLTPVFKRPAIDSAGRPLPVYRLQDLKVGMPLLNGTVVSVTENYCFIDAGVVRGQSAEEQIEGSEDGQGDGRE--PRKRLRQPKPRRLNGRLYRLDLQEKYALSEKYKTALTLSVLTPGMSLPVYVKGVYLNSWQYSLTVDPSITEEKAAALKEDRAAQLLAMKSKQPVDALLLGESRKGVITKILPGGVKVGIGVKKTGFVSLDSVSEAYGNEIKDLKRVLVVGGRLQVEVDRISEDGEKIDLRCLEIYPQEAVVKKKV 398
            + + ++LA     +   FV  +    +MR+P+E P RRH+ VPVA PG  +L+SL+VNQ L+G+V+S+Y+G  GHRKLFVDVG+TRTD +G++FPVFGMVRLQGPYQN+TY YGQ++  LYV  V+   ARL L LTPV+KRP  D  G PLPV+RLQDLKVGMPLLN TVVS+T+NYCF+DAGVVRGQ+  EQ +   DG   G +  PR+RLR PKPR L GRLYR DL E+YAL++K++TA T +VLTPGMSLPVYVKGV+L+SWQYSLTVDP +TEEKAAALKE+R AQL A  SKQPVDALL+GESRKGVITKILPGGVKVGIGVK TGFV LDSVSEAYG EIKDL RVLVVGGRLQVEVD +S+DG++IDLRCLEI+PQ    KK V
Sbjct:    6 IRIAMFLAAATLNYGDSFVYQSTRTLSMRIPYETPWRRHTKVPVARPGVHALSSLRVNQHLSGTVISLYEG-TGHRKLFVDVGVTRTDVRGRHFPVFGMVRLQGPYQNKTYTYGQQVQDLYVRAVFPEPARLFLSLTPVYKRPVSDGTGEPLPVHRLQDLKVGMPLLNATVVSLTDNYCFLDAGVVRGQTEAEQAKMMHDGGKGGEKGTPRRRLRHPKPRPLMGRLYRGDLLEQYALTDKFRTATTKAVLTPGMSLPVYVKGVHLDSWQYSLTVDPEMTEEKAAALKEERKAQLKAQASKQPVDALLIGESRKGVITKILPGGVKVGIGVKITGFVPLDSVSEAYGEEIKDLSRVLVVGGRLQVEVDEVSDDGKRIDLRCLEIFPQVGSTKKTV 398          
BLAST of NO08G01110 vs. NCBI_GenBank
Match: CBJ31572.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 103.6 bits (257), Expect = 1.600e-18
Identity = 96/332 (28.92%), Postives = 161/332 (48.49%), Query Frame = 0
Query:   52 PGRLSLASLQVNQQLTGSVVSIYDGPAGHRKLFVDVGITRTDKQGKYFPVFGMVRL--QGPYQNRTYAYGQRLDVLYVDEVYLGAARLLLRL-TPVFKRPAIDSAGRPLPVYRLQDLKVGMPLLNGTVVSVTENYCFIDAGVVRGQSAEEQIEGSEDGQGDGREPRKRLRQPKP---RRLNGRLYRLDLQEKYALS-EKYKTALTLSVLTPGMSLPVYVKGVYLNSWQYSLTVDPSITEEKAAALKEDRAAQLLAMKSKQPVDALLLGESRKGVITKILPGGVKVGIGVKKTGFVSLDSVSEAYGNEIKDLKRVLVVGGRLQVEVDRISEDG 377
            P RL L +L+V ++L G VV+  DG +G +K +V VG+ R  K GK+  V GM+RL  +   + +  A  + + V YV +V     RL + L  P    P +D++     +  L DLK G   L G V +VT+   F+  GV                   GR  R++ R  KP     ++G L + D+ E  ALS +  KT    ++++ G  + V+VK  +  + ++ +T+DP+++ E    +K +   +      ++    L+ GE   G I ++L  G  V +G K  G V + S+SE     + +L     VG ++ V V+ + E+G
Sbjct:   69 PPRL-LENLEVGERLKGVVVTELDGTSG-KKAWVRVGVMRRAKGGKFSHVDGMIRLNKEKGLKPKKVAVDKPVTV-YVSKVIEAEGRLEVSLRAPKPLAPIVDTS----TLKPLADLKHGEE-LTGVVKTVTQFAAFVQCGV-------------------GRPTRRKRRDGKPMVMEEVDGFLGKDDVPEDAALSAQLVKTQDQTNIISEGDRVKVFVKETFPGNGRFHVTLDPNVSAEDLRRMKNEVQKKKSKFARRKETGDLVEGEEILGGIVRVLEFGFFVDVGAKANGLVHISSISEKENRYLDNLNEFASVGDKMYVRVNGVDEEG 373          
The following BLAST results are available for this feature:
BLAST of NO08G01110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM26746.12.000e-14167.77Nucleic acid-binding protein [Nannochloropsis gadi... [more]
CBJ31572.11.600e-1828.92conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008943NSK008943Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G01110.1NO08G01110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|360750gene_3440Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g18gene3940Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G01110.1NO08G01110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G01110 ID=NO08G01110|Name=NO08G01110|organism=Nannochloropsis oceanica|type=gene|length=1365bp
ATGATTTGCCTAGGCCTCAACTTCGTCCTCATGGTGGTATACCTTGCCAC
CGGTGCGCAGACGTTTTTTGTCCGACCAACCATGACGATGACGACGATGC
GCGTGCCCCATGAGGCGCCGTTGCGGCGGCATAGTGGGGTGCCTGTCGCG
AGTCCAGGCCGCCTCTCCCTTGCCTCACTCCAGGTCAATCAGCAGCTCAC
GGGCTCGGTCGTCAGCATCTACGATGGTCCCGCTGGACATCGCAAGCTTT
TTGTGGACGTCGGCATCACCCGTACGGACAAGCAAGGGAAGTACTTCCCC
GTTTTCGGGATGGTGCGTCTGCAAGGGCCATACCAGAATAGGACCTATGC
ATATGGCCAGCGATTGGACGTCTTGTACGTTGATGAAGTCTACCTGGGGG
CCGCCCGTCTGCTCCTCCGCCTGACACCCGTGTTTAAACGCCCAGCAATT
GACTCAGCTGGACGGCCTTTGCCTGTGTATAGGCTACAGGATTTAAAGGT
GGGAATGCCACTATTAAATGGCACTGTCGTGAGCGTCACGGAGAACTACT
GCTTCATCGACGCAGGGGTCGTGCGTGGGCAGTCGGCCGAGGAGCAAATC
GAAGGGAGCGAAGATGGTCAAGGAGATGGAAGAGAGCCGCGCAAAAGGCT
GAGACAACCCAAGCCGCGGAGATTGAACGGGCGGCTATACCGCTTGGATT
TACAGGAGAAATATGCCTTGTCCGAAAAGTACAAGACGGCCTTGACACTT
TCAGTTCTCACACCTGGTATGTCCCTTCCCGTTTACGTCAAAGGCGTTTA
CTTAAATTCCTGGCAGTATTCCCTCACTGTTGATCCTTCCATCACGGAAG
AGAAAGCCGCCGCGCTCAAGGAGGATAGGGCAGCACAGTTACTGGCAATG
AAATCCAAGCAACCAGTCGATGCCCTCCTACTTGGGGAATCCCGCAAGGG
GGTGATCACCAAAATCCTACCCGGTGGGGTCAAAGTCGGAATAGGTGTGA
AAAAAACGGGTTTCGTGTCACTAGATTCGGTGAGCGAAGCATACGGGAAT
GAGATAAAGGATTTGAAGAGGGTGTTGGTGGTAGGGGGAAGGTTACAGGT
AGAGGTGGATCGGATCTCAGAGGATGGAGAGAAGATTGACTTGAGATGCT
TGGAGATCTATCCGCAAGAGGCCGTGGTTAAAAAAAAGGTGGCCAATGCG
AAGGGAAAGGGGAAGGGAGGAAGGGCGAAGGTAATGGAGAAAAAGGAGGA
GGAAGAGGGTGAAAGAAGGAAACAGAAGAAGTATGATGATGATGATGATG
ATGATGATGATGATGATGATGATGATGATGATTATGATCGATTGGGGTAC
GACGATGAATGGTAA
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protein sequence of NO08G01110.1

>NO08G01110.1-protein ID=NO08G01110.1-protein|Name=NO08G01110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=455bp
MICLGLNFVLMVVYLATGAQTFFVRPTMTMTTMRVPHEAPLRRHSGVPVA
SPGRLSLASLQVNQQLTGSVVSIYDGPAGHRKLFVDVGITRTDKQGKYFP
VFGMVRLQGPYQNRTYAYGQRLDVLYVDEVYLGAARLLLRLTPVFKRPAI
DSAGRPLPVYRLQDLKVGMPLLNGTVVSVTENYCFIDAGVVRGQSAEEQI
EGSEDGQGDGREPRKRLRQPKPRRLNGRLYRLDLQEKYALSEKYKTALTL
SVLTPGMSLPVYVKGVYLNSWQYSLTVDPSITEEKAAALKEDRAAQLLAM
KSKQPVDALLLGESRKGVITKILPGGVKVGIGVKKTGFVSLDSVSEAYGN
EIKDLKRVLVVGGRLQVEVDRISEDGEKIDLRCLEIYPQEAVVKKKVANA
KGKGKGGRAKVMEKKEEEEGERRKQKKYDDDDDDDDDDDDDDDDYDRLGY
DDEW*
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Synonyms
Publications