NO08G01110.1, NO08G01110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01110.1
Unique NameNO08G01110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1365
Alignment locationchr8:352470..353834 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:352470..353834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G01110.1 vs.
Match: EWM26746.1 (Nucleic acid-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 528.5 bits (1360), Expect = 2.100e-146
Identity = 296/456 (64.91%), Postives = 354/456 (77.63%), Query Frame = 0 
Query:    9 VLMVVYLATGAQTF---FVRPTMTMTTMRVPHEAPLRRHSGVPVASPGRLSLASLQVNQQLTGSVVSIYDGPAGHRKLFVDVGITRTDKQGKYFPVFGMVRLQGPYQNRTYAYGQRLDVLYVDEVYLGAARLLLRLTPVFKRPAIDSAGRPLPVYRLQDLKVGMPLLNGTVVSVTENYCFIDAGVVRGQSAEEQIEGSEDGQGDGRE--PRKRLRQPKPRRLNGRLYRLDLQEKYALSEKYKTALTLSVLTPGMSLPVYVKGVYLNSWQYSLTVDPSITEEKAAALKEDRAAQLLAMKSKQPVDALLLGESRKGVITKILPGGVKVGIGVKKTGFVSLDSVSEAYGNEIKDLKRVLVVGGRLQVEVDRISEDGEKIDLRCLEIYPQEAVVKKKVANAKGKGKGGRAKVMEKKEEEEGERRKQKK-----YDDDDDDDDDDDDDDDDYDRLGYDDEW 455
            + + ++LA     +   FV  +    +MR+P+E P RRH+ VPVA PG  +L+SL+VNQ L+G+V+S+Y+G  GHRKLFVDVG+TRTD +G++FPVFGMVRLQGPYQN+TY YGQ++  LYV  V+   ARL L LTPV+KRP  D  G PLPV+RLQDLKVGMPLLN TVVS+T+NYCF+DAGVVRGQ+  EQ +   DG   G +  PR+RLR PKPR L GRLYR DL E+YAL++K++TA T +VLTPGMSLPVYVKGV+L+SWQYSLTVDP +TEEKAAALKE+R AQL A  SKQPVDALL+GESRKGVITKILPGGVKVGIGVK TGFV LDSVSEAYG EIKDL RVLVVGGRLQVEVD +S+DG++IDLRCLEI+PQ    KK V  A   GK  +A    K+   EG ++ ++K       DDDDDDDD   D+DDYDRLGYDDEW
Sbjct:    6 IRIAMFLAAATLNYGDSFVYQSTRTLSMRIPYETPWRRHTKVPVARPGVHALSSLRVNQHLSGTVISLYEG-TGHRKLFVDVGVTRTDVRGRHFPVFGMVRLQGPYQNKTYTYGQQVQDLYVRAVFPEPARLFLSLTPVYKRPVSDGTGEPLPVHRLQDLKVGMPLLNATVVSLTDNYCFLDAGVVRGQTEAEQAKMMHDGGKGGEKGTPRRRLRHPKPRPLMGRLYRGDLLEQYALTDKFRTATTKAVLTPGMSLPVYVKGVHLDSWQYSLTVDPEMTEEKAAALKEERKAQLKAQASKQPVDALLIGESRKGVITKILPGGVKVGIGVKITGFVPLDSVSEAYGEEIKDLSRVLVVGGRLQVEVDEVSDDGKRIDLRCLEIFPQVGSTKKTVGKA---GKADQASGRRKESVGEGAKKGEQKRMSNPSYDDDDDDDDYGGDEDDYDRLGYDDEW 457
The following BLAST results are available for this feature:
BLAST of NO08G01110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26746.12.100e-14664.91Nucleic acid-binding protein [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01110NO08G01110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01110.1NO08G01110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01110.1.cds1NO08G01110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01110.1 ID=NO08G01110.1|Name=NO08G01110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1365bp
ATGATTTGCCTAGGCCTCAACTTCGTCCTCATGGTGGTATACCTTGCCAC
CGGTGCGCAGACGTTTTTTGTCCGACCAACCATGACGATGACGACGATGC
GCGTGCCCCATGAGGCGCCGTTGCGGCGGCATAGTGGGGTGCCTGTCGCG
AGTCCAGGCCGCCTCTCCCTTGCCTCACTCCAGGTCAATCAGCAGCTCAC
GGGCTCGGTCGTCAGCATCTACGATGGTCCCGCTGGACATCGCAAGCTTT
TTGTGGACGTCGGCATCACCCGTACGGACAAGCAAGGGAAGTACTTCCCC
GTTTTCGGGATGGTGCGTCTGCAAGGGCCATACCAGAATAGGACCTATGC
ATATGGCCAGCGATTGGACGTCTTGTACGTTGATGAAGTCTACCTGGGGG
CCGCCCGTCTGCTCCTCCGCCTGACACCCGTGTTTAAACGCCCAGCAATT
GACTCAGCTGGACGGCCTTTGCCTGTGTATAGGCTACAGGATTTAAAGGT
GGGAATGCCACTATTAAATGGCACTGTCGTGAGCGTCACGGAGAACTACT
GCTTCATCGACGCAGGGGTCGTGCGTGGGCAGTCGGCCGAGGAGCAAATC
GAAGGGAGCGAAGATGGTCAAGGAGATGGAAGAGAGCCGCGCAAAAGGCT
GAGACAACCCAAGCCGCGGAGATTGAACGGGCGGCTATACCGCTTGGATT
TACAGGAGAAATATGCCTTGTCCGAAAAGTACAAGACGGCCTTGACACTT
TCAGTTCTCACACCTGGTATGTCCCTTCCCGTTTACGTCAAAGGCGTTTA
CTTAAATTCCTGGCAGTATTCCCTCACTGTTGATCCTTCCATCACGGAAG
AGAAAGCCGCCGCGCTCAAGGAGGATAGGGCAGCACAGTTACTGGCAATG
AAATCCAAGCAACCAGTCGATGCCCTCCTACTTGGGGAATCCCGCAAGGG
GGTGATCACCAAAATCCTACCCGGTGGGGTCAAAGTCGGAATAGGTGTGA
AAAAAACGGGTTTCGTGTCACTAGATTCGGTGAGCGAAGCATACGGGAAT
GAGATAAAGGATTTGAAGAGGGTGTTGGTGGTAGGGGGAAGGTTACAGGT
AGAGGTGGATCGGATCTCAGAGGATGGAGAGAAGATTGACTTGAGATGCT
TGGAGATCTATCCGCAAGAGGCCGTGGTTAAAAAAAAGGTGGCCAATGCG
AAGGGAAAGGGGAAGGGAGGAAGGGCGAAGGTAATGGAGAAAAAGGAGGA
GGAAGAGGGTGAAAGAAGGAAACAGAAGAAGTATGATGATGATGATGATG
ATGATGATGATGATGATGATGATGATGATGATTATGATCGATTGGGGTAC
GACGATGAATGGTAA
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protein sequence of NO08G01110.1

>NO08G01110.1-protein ID=NO08G01110.1-protein|Name=NO08G01110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=455bp
MICLGLNFVLMVVYLATGAQTFFVRPTMTMTTMRVPHEAPLRRHSGVPVA
SPGRLSLASLQVNQQLTGSVVSIYDGPAGHRKLFVDVGITRTDKQGKYFP
VFGMVRLQGPYQNRTYAYGQRLDVLYVDEVYLGAARLLLRLTPVFKRPAI
DSAGRPLPVYRLQDLKVGMPLLNGTVVSVTENYCFIDAGVVRGQSAEEQI
EGSEDGQGDGREPRKRLRQPKPRRLNGRLYRLDLQEKYALSEKYKTALTL
SVLTPGMSLPVYVKGVYLNSWQYSLTVDPSITEEKAAALKEDRAAQLLAM
KSKQPVDALLLGESRKGVITKILPGGVKVGIGVKKTGFVSLDSVSEAYGN
EIKDLKRVLVVGGRLQVEVDRISEDGEKIDLRCLEIYPQEAVVKKKVANA
KGKGKGGRAKVMEKKEEEEGERRKQKKYDDDDDDDDDDDDDDDDYDRLGY
DDEW*
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mRNA from alignment at chr8:352470..353834-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01110.1 ID=NO08G01110.1|Name=NO08G01110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1365bp|location=Sequence derived from alignment at chr8:352470..353834- (Nannochloropsis oceanica)
ATGATTTGCCTAGGCCTCAACTTCGTCCTCATGGTGGTATACCTTGCCAC
CGGTGCGCAGACGTTTTTTGTCCGACCAACCATGACGATGACGACGATGC
GCGTGCCCCATGAGGCGCCGTTGCGGCGGCATAGTGGGGTGCCTGTCGCG
AGTCCAGGCCGCCTCTCCCTTGCCTCACTCCAGGTCAATCAGCAGCTCAC
GGGCTCGGTCGTCAGCATCTACGATGGTCCCGCTGGACATCGCAAGCTTT
TTGTGGACGTCGGCATCACCCGTACGGACAAGCAAGGGAAGTACTTCCCC
GTTTTCGGGATGGTGCGTCTGCAAGGGCCATACCAGAATAGGACCTATGC
ATATGGCCAGCGATTGGACGTCTTGTACGTTGATGAAGTCTACCTGGGGG
CCGCCCGTCTGCTCCTCCGCCTGACACCCGTGTTTAAACGCCCAGCAATT
GACTCAGCTGGACGGCCTTTGCCTGTGTATAGGCTACAGGATTTAAAGGT
GGGAATGCCACTATTAAATGGCACTGTCGTGAGCGTCACGGAGAACTACT
GCTTCATCGACGCAGGGGTCGTGCGTGGGCAGTCGGCCGAGGAGCAAATC
GAAGGGAGCGAAGATGGTCAAGGAGATGGAAGAGAGCCGCGCAAAAGGCT
GAGACAACCCAAGCCGCGGAGATTGAACGGGCGGCTATACCGCTTGGATT
TACAGGAGAAATATGCCTTGTCCGAAAAGTACAAGACGGCCTTGACACTT
TCAGTTCTCACACCTGGTATGTCCCTTCCCGTTTACGTCAAAGGCGTTTA
CTTAAATTCCTGGCAGTATTCCCTCACTGTTGATCCTTCCATCACGGAAG
AGAAAGCCGCCGCGCTCAAGGAGGATAGGGCAGCACAGTTACTGGCAATG
AAATCCAAGCAACCAGTCGATGCCCTCCTACTTGGGGAATCCCGCAAGGG
GGTGATCACCAAAATCCTACCCGGTGGGGTCAAAGTCGGAATAGGTGTGA
AAAAAACGGGTTTCGTGTCACTAGATTCGGTGAGCGAAGCATACGGGAAT
GAGATAAAGGATTTGAAGAGGGTGTTGGTGGTAGGGGGAAGGTTACAGGT
AGAGGTGGATCGGATCTCAGAGGATGGAGAGAAGATTGACTTGAGATGCT
TGGAGATCTATCCGCAAGAGGCCGTGGTTAAAAAAAAGGTGGCCAATGCG
AAGGGAAAGGGGAAGGGAGGAAGGGCGAAGGTAATGGAGAAAAAGGAGGA
GGAAGAGGGTGAAAGAAGGAAACAGAAGAAGTATGATGATGATGATGATG
ATGATGATGATGATGATGATGATGATGATGATTATGATCGATTGGGGTAC
GACGATGAATGGTAA
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Coding sequence (CDS) from alignment at chr8:352470..353834-

>NO08G01110.1 ID=NO08G01110.1|Name=NO08G01110.1|organism=Nannochloropsis oceanica|type=CDS|length=1365bp|location=Sequence derived from alignment at chr8:352470..353834- (Nannochloropsis oceanica)
ATGATTTGCCTAGGCCTCAACTTCGTCCTCATGGTGGTATACCTTGCCAC
CGGTGCGCAGACGTTTTTTGTCCGACCAACCATGACGATGACGACGATGC
GCGTGCCCCATGAGGCGCCGTTGCGGCGGCATAGTGGGGTGCCTGTCGCG
AGTCCAGGCCGCCTCTCCCTTGCCTCACTCCAGGTCAATCAGCAGCTCAC
GGGCTCGGTCGTCAGCATCTACGATGGTCCCGCTGGACATCGCAAGCTTT
TTGTGGACGTCGGCATCACCCGTACGGACAAGCAAGGGAAGTACTTCCCC
GTTTTCGGGATGGTGCGTCTGCAAGGGCCATACCAGAATAGGACCTATGC
ATATGGCCAGCGATTGGACGTCTTGTACGTTGATGAAGTCTACCTGGGGG
CCGCCCGTCTGCTCCTCCGCCTGACACCCGTGTTTAAACGCCCAGCAATT
GACTCAGCTGGACGGCCTTTGCCTGTGTATAGGCTACAGGATTTAAAGGT
GGGAATGCCACTATTAAATGGCACTGTCGTGAGCGTCACGGAGAACTACT
GCTTCATCGACGCAGGGGTCGTGCGTGGGCAGTCGGCCGAGGAGCAAATC
GAAGGGAGCGAAGATGGTCAAGGAGATGGAAGAGAGCCGCGCAAAAGGCT
GAGACAACCCAAGCCGCGGAGATTGAACGGGCGGCTATACCGCTTGGATT
TACAGGAGAAATATGCCTTGTCCGAAAAGTACAAGACGGCCTTGACACTT
TCAGTTCTCACACCTGGTATGTCCCTTCCCGTTTACGTCAAAGGCGTTTA
CTTAAATTCCTGGCAGTATTCCCTCACTGTTGATCCTTCCATCACGGAAG
AGAAAGCCGCCGCGCTCAAGGAGGATAGGGCAGCACAGTTACTGGCAATG
AAATCCAAGCAACCAGTCGATGCCCTCCTACTTGGGGAATCCCGCAAGGG
GGTGATCACCAAAATCCTACCCGGTGGGGTCAAAGTCGGAATAGGTGTGA
AAAAAACGGGTTTCGTGTCACTAGATTCGGTGAGCGAAGCATACGGGAAT
GAGATAAAGGATTTGAAGAGGGTGTTGGTGGTAGGGGGAAGGTTACAGGT
AGAGGTGGATCGGATCTCAGAGGATGGAGAGAAGATTGACTTGAGATGCT
TGGAGATCTATCCGCAAGAGGCCGTGGTTAAAAAAAAGGTGGCCAATGCG
AAGGGAAAGGGGAAGGGAGGAAGGGCGAAGGTAATGGAGAAAAAGGAGGA
GGAAGAGGGTGAAAGAAGGAAACAGAAGAAGTATGATGATGATGATGATG
ATGATGATGATGATGATGATGATGATGATGATTATGATCGATTGGGGTAC
GACGATGAATGGTAA
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Synonyms
Publications