NO08G00740, NO08G00740 (gene) Nannochloropsis oceanica

Overview
NameNO08G00740
Unique NameNO08G00740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1923
Alignment locationchr8:249992..251914 -

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Properties
Property NameValue
DescriptionCold-inducible rna-binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:249992..251914 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
BLAST of NO08G00740 vs. NCBI_GenBank
Match: EWM26565.1 (cold-inducible rna-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 184.5 bits (467), Expect = 2.600e-43
Identity = 94/116 (81.03%), Postives = 101/116 (87.07%), Query Frame = 0
Query:   18 EAVPDTPVEET-PNAEEPLNDEGKLYVGNLAFKTTEDGLREAFGSHGEITFARVISDRDSGRSRGFGFVTFAEKDEAQLAIDALNETELDGRTIRVNFAQPRDPNAPRPPRRSYRG 133
            EAV  T VEET  N EE LNDEGKLY+GNL+FKTTEDGLREAF  HGE++FARVISDRD+GRSRGFGFVTF  K++AQ AIDALNETELDGR IRVNFAQPRDPNAPR P RSYRG
Sbjct:   24 EAVASTAVEETSKNEEEALNDEGKLYIGNLSFKTTEDGLREAFSEHGEVSFARVISDRDTGRSRGFGFVTFTNKEDAQGAIDALNETELDGRPIRVNFAQPRDPNAPRRPPRSYRG 139          
BLAST of NO08G00740 vs. NCBI_GenBank
Match: XP_016609239.1 (hypothetical protein SPPG_04290 [Spizellomyces punctatus DAOM BR117] >KND01200.1 hypothetical protein SPPG_04290 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 107.8 bits (268), Expect = 3.100e-20
Identity = 50/83 (60.24%), Postives = 66/83 (79.52%), Query Frame = 0
Query:   40 KLYVGNLAFKTTEDGLREAFGSHGEITFARVISDRDSGRSRGFGFVTFAEKDEAQLAIDALNETELDGRTIRVNFAQPRDPNA 123
            K++VGNL++ TT+D L  AF ++GEIT A V+ DR++GRSRGFGFVTFA +D+AQ AI  +N+ ELDGRT+RVN A  R PN+
Sbjct:    4 KVFVGNLSWSTTDDTLHSAFSTYGEITDAVVLKDRETGRSRGFGFVTFAGEDQAQAAIQGMNDQELDGRTVRVNLANERPPNS 86          
BLAST of NO08G00740 vs. NCBI_GenBank
Match: PIV22324.1 (RNA-binding protein [Deltaproteobacteria bacterium CG03_land_8_20_14_0_80_45_14] >PIX24299.1 RNA-binding protein [Deltaproteobacteria bacterium CG_4_8_14_3_um_filter_45_9])

HSP 1 Score: 106.7 bits (265), Expect = 6.800e-20
Identity = 50/81 (61.73%), Postives = 67/81 (82.72%), Query Frame = 0
Query:   40 KLYVGNLAFKTTEDGLREAFGSHGEITFARVISDRDSGRSRGFGFVTFAEKDEAQLAIDALNETELDGRTIRVNFAQPRDP 121
            KL+VG L++ T +DGLR+AF S+GEIT A+VI+DRD+GRSRGFGFVTFA+ D+A+ AI  ++ T LDG+TI+VN AQ + P
Sbjct:    4 KLFVGGLSWDTKDDGLRQAFASYGEITEAKVITDRDTGRSRGFGFVTFAQDDDAKTAISKMDGTNLDGKTIKVNEAQEKSP 84          
BLAST of NO08G00740 vs. NCBI_GenBank
Match: PLY13490.1 (RNA-binding protein [Sedimenticola sp.])

HSP 1 Score: 105.1 bits (261), Expect = 2.000e-19
Identity = 46/87 (52.87%), Postives = 66/87 (75.86%), Query Frame = 0
Query:   41 LYVGNLAFKTTEDGLREAFGSHGEITFARVISDRDSGRSRGFGFVTFAEKDEAQLAIDALNETELDGRTIRVNFAQPRDPNAPRPPR 128
            +YVGNL+++ T+D LR+ F  HGE++ A++I DR++GRS+GFGFV   +  +AQ AIDALN+ ++ GR +RVN A+PR  N PR PR
Sbjct:    3 IYVGNLSYRMTDDELRDIFAEHGEVSSAKIIMDRETGRSKGFGFVEMPDNKQAQEAIDALNDKDISGRNLRVNEARPRKDNGPRQPR 89          
BLAST of NO08G00740 vs. NCBI_GenBank
Match: CEH16951.1 (rna-binding domain-containing protein [Ceraceosorus bombacis])

HSP 1 Score: 104.0 bits (258), Expect = 4.400e-19
Identity = 51/79 (64.56%), Postives = 61/79 (77.22%), Query Frame = 0
Query:   40 KLYVGNLAFKTTEDGLREAFGSHGEITFARVISDRDSGRSRGFGFVTFAEKDEAQLAIDALNETELDGRTIRVNFAQPR 119
            K+YVGNL++ TTED L  AF +HG++T   V+ DRD+GRSRGFGFVTF+ + EA  AI ALNETELDGR IRVN A  R
Sbjct:    4 KVYVGNLSWNTTEDSLSRAFSAHGQLTDYVVMRDRDTGRSRGFGFVTFSSQHEADSAIAALNETELDGRRIRVNMANSR 82          
BLAST of NO08G00740 vs. NCBI_GenBank
Match: OPL18730.1 (RNA-binding protein [Candidatus Aegiribacteria bacterium MLS_C])

HSP 1 Score: 104.0 bits (258), Expect = 4.400e-19
Identity = 48/79 (60.76%), Postives = 64/79 (81.01%), Query Frame = 0
Query:   40 KLYVGNLAFKTTEDGLREAFGSHGEITFARVISDRDSGRSRGFGFVTFAEKDEAQLAIDALNETELDGRTIRVNFAQPR 119
            KL+VG L++ TT+  LREAF ++G +T A+VI +RDSGRSRGFGFVTF  +D+A  A+DA+N+TELDGR IRV+FA  +
Sbjct:    4 KLFVGGLSWSTTDKELREAFEAYGSVTEAKVIKERDSGRSRGFGFVTFENEDDATAAVDAMNDTELDGRNIRVDFAHDK 82          
BLAST of NO08G00740 vs. NCBI_GenBank
Match: XP_015622053.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Oryza sativa Japonica Group] >XP_015622054.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Oryza sativa Japonica Group] >CAA05729.1 OsGRP2 [Oryza sativa Japonica Group] >BAB86134.1 OsGRP2 [Oryza sativa Japonica Group] >BAB92683.1 OsGRP2 [Oryza sativa Japonica Group] >BAF07109.1 Os01g0916600 [Oryza sativa Japonica Group] >EAY76961.1 hypothetical protein OsI_04919 [Oryza sativa Indica Group] >EAZ14617.1 hypothetical protein OsJ_04542 [Oryza sativa Japonica Group] >BAG86996.1 unnamed protein product [Oryza sativa Japonica Group] >BAH00599.1 unnamed protein product [Oryza sativa Japonica Group] >BAS75890.1 Os01g0916600 [Oryza sativa Japonica Group])

HSP 1 Score: 103.6 bits (257), Expect = 5.800e-19
Identity = 49/81 (60.49%), Postives = 66/81 (81.48%), Query Frame = 0
Query:   40 KLYVGNLAFKTTEDGLREAFGSHGEITFARVISDRDSGRSRGFGFVTFAEKDEAQLAIDALNETELDGRTIRVNFAQPRDP 121
            KL+VG L++ T +D L+EAF S G++T ARVI+DR+SGRSRGFGFV+FA  D+A+ A+DA++  EL+GR+IRVNFA  R P
Sbjct:   38 KLFVGGLSWNTNDDSLKEAFTSFGDVTEARVINDRESGRSRGFGFVSFANGDDAKSAMDAMDGKELEGRSIRVNFANERPP 118          
BLAST of NO08G00740 vs. NCBI_GenBank
Match: XP_001730695.1 (hypothetical protein MGL_2149 [Malassezia globosa CBS 7966] >EDP43481.1 hypothetical protein MGL_2149 [Malassezia globosa CBS 7966])

HSP 1 Score: 103.2 bits (256), Expect = 7.600e-19
Identity = 51/81 (62.96%), Postives = 61/81 (75.31%), Query Frame = 0
Query:   40 KLYVGNLAFKTTEDGLREAFGSHGEITFARVISDRDSGRSRGFGFVTFAEKDEAQLAIDALNETELDGRTIRVNFAQPRDP 121
            K+YVGNL++ TT+DGL +AF  +G++T   V+ DRDSGRSRGFGFVTF  + EA  AI ALNE ELDGR IRVN A  R P
Sbjct:    3 KVYVGNLSWSTTDDGLAQAFSPYGQLTDYIVMKDRDSGRSRGFGFVTFMTQQEADAAIMALNEQELDGRRIRVNMANSRPP 83          
BLAST of NO08G00740 vs. NCBI_GenBank
Match: KPK56191.1 (RNA-binding protein [Gammaproteobacteria bacterium SG8_31])

HSP 1 Score: 102.8 bits (255), Expect = 9.900e-19
Identity = 48/85 (56.47%), Postives = 67/85 (78.82%), Query Frame = 0
Query:   41 LYVGNLAFKTTEDGLREAFGSHGEITFARVISDRDSGRSRGFGFVTFAEKDEAQLAIDALNETELDGRTIRVNFAQPR-DPNAPR 125
            +YVGNLAF+TTED LR+ F  HGE++  ++I+DR++GRSRGFGFV    + EA+ AI+A+N+T++ GR +RVN A+PR D  APR
Sbjct:    3 IYVGNLAFRTTEDDLRQLFAEHGEVSSVKIIADRETGRSRGFGFVEMPNQAEAEAAINAINDTDVGGRNLRVNEARPRTDRPAPR 87          
BLAST of NO08G00740 vs. NCBI_GenBank
Match: PJB48864.1 (RNA-binding protein [Deltaproteobacteria bacterium CG_4_9_14_3_um_filter_63_12])

HSP 1 Score: 102.4 bits (254), Expect = 1.300e-18
Identity = 49/77 (63.64%), Postives = 62/77 (80.52%), Query Frame = 0
Query:   40 KLYVGNLAFKTTEDGLREAFGSHGEITFARVISDRDSGRSRGFGFVTFAEKDEAQLAIDALNETELDGRTIRVNFAQ 117
            KL+VG L++ T  D LR AF +HGE+T A VISDRD+GRSRGFGFVT+A+ ++AQ AI A++ TELDGRT+ VN AQ
Sbjct:    4 KLFVGGLSWGTDNDALRTAFEAHGEVTDAVVISDRDTGRSRGFGFVTYADSNDAQKAISAMDGTELDGRTVNVNLAQ 80          
The following BLAST results are available for this feature:
BLAST of NO08G00740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26565.12.600e-4381.03cold-inducible rna-binding protein [Nannochloropsi... [more]
XP_016609239.13.100e-2060.24hypothetical protein SPPG_04290 [Spizellomyces pun... [more]
PIV22324.16.800e-2061.73RNA-binding protein [Deltaproteobacteria bacterium... [more]
PLY13490.12.000e-1952.87RNA-binding protein [Sedimenticola sp.][more]
CEH16951.14.400e-1964.56rna-binding domain-containing protein [Ceraceosoru... [more]
OPL18730.14.400e-1960.76RNA-binding protein [Candidatus Aegiribacteria bac... [more]
XP_015622053.15.800e-1960.49PREDICTED: glycine-rich RNA-binding protein 4, mit... [more]
XP_001730695.17.600e-1962.96hypothetical protein MGL_2149 [Malassezia globosa ... [more]
KPK56191.19.900e-1956.47RNA-binding protein [Gammaproteobacteria bacterium... [more]
PJB48864.11.300e-1863.64RNA-binding protein [Deltaproteobacteria bacterium... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008986NSK008986Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00740.1NO08G00740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582009gene_3403Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100084g12gene3972Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00740.1NO08G00740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00740 ID=NO08G00740|Name=NO08G00740|organism=Nannochloropsis oceanica|type=gene|length=1923bp
GATCGGCACGTTTTATGCGTCCAAGCCCGCGTCAGGATTTGCGTGGAAAA
GCGTGGGGAAAGGTAACATAAGCGGAGTGAAAGAAAGGGCAGAGCGAGAC
ATCTGTAAACCGCTTGCTTGACATGGTCTTGTCTGATATCCCTGTCATGT
GTGCTGGATTTTATAGATCGGGCTCTAGCAGGGAAATTACTGAGACTGAG
ACTGATCTCAATAGGGAATGTTAGGGGAGAATGGACGGCCACGGGAAAGA
GGGCGAGGCTCAAAGCGACACCTAGGCCTGGAGAACAACTCAACTTGCCC
TTCCTCCACCCACCCAATGCCCCATCTGCTCGTCCTAATCCTTTCCATCT
ATGCTACGCACAGGGTGCCAGCAGCATCAACCAGGAGAGATGTCTGAAAC
GGAGGCGGTGCCTGATACCCCGGTGGAGGAGACCCCCAACGCTGAGGAGC
CCTTGAACGATgtaagtattttatcaaacaaggagaggggagggcgagga
gcgcaacacgcataggcatggcacgagaaaaagtgcgaagggttgacctt
ttgtgtgtccttgataacttttccaacagGAGGGAAAATTGTACGTCGGC
AACTTGGCGTTTAAGACCACGGAGGATGGCCTCCGGGAGGCGTTTGGGAG
CCACGGCGAGATCACCTTTGCGCGCGTCATCAGTGACCGGGATTCCGGCC
GCTCCAGgtacgtgttaagcttaaatcatacgtcgagacagtgcgccatt
gaggcctgaatgtctgatttcagtgtgcagactcatttcttcctcatgct
tcgtcgctaactctctactaacctcctccctccgatccactactccactc
cactcgcaccactccctcccctcacacgccaacagGGGCTTCGGCTTCGT
GACCTTCGCCGAGAAGGATGAGGCGCAGCTGGCTATTGACGCGCTCAACG
AGACGGAGCTGGACGGACGTACTATCCGGGTGAACTTTGCTCAGCCCCGT
GACCCGAACGCTCCTCGTCCCCCTCGCCGCAGCTACAGAGGCCGTGGCCG
TGGTCGTGGTTTTCGTGGCGGGCGTGCTCGGGGGGAGAATGGAGGTGAAG
GGGCCGCCGCTGCCCCCGAATCCTAAAACTGCATAATCTCTAAAAAGGAT
GAAACGAGAGGAGGTAGCGAGAGGAAGGAGGGATGGTTTGAGTGCCTCTC
CTGTATGTGAGTTTGCTAGCTGCTCTACGTCCAGTGGTTGACTTGGCAGT
AGATTTGGAGGATGGTCAGGTGTAGGAGCGGAGTCGGTTCTATCTTTCAT
ATCACAGTTTTTTGTTTCTAAATGTGTGGAGAGGTGGTAGGTATCAAGTG
CGTCACACCTCCTTCCCGCCGCCGCTGCTGTTGCTGCCACCACCAGCGTG
TCTTCACATTACTTGCAAGAGGAATCAATGTGGAAGTGCTGTGGTGGTGT
TGGCGGTGGAAGTGGAGCGGGAAGAGAGGGGGTGCAGGGAGAGGGAATGC
CTGCCAAAGAATGGGCTACAGAAAGGGGGAAAGTTTGGAGGCAAAGAGGA
CACGACTAACGGGAAGGAGGGAGGGAGAAAGAAGAGAGGAAGGTGATGGA
GGGAGGATTGGTACTATGATGAAGAGATGGCAGGAGAGAGCGAGAAGGAG
AGAGAAGTGACGGAGACAGAGAAGGAGATGGACAGCAACTCGCGAAAGCA
ATGCAAGGATAAGCACAAGCAGCCCCTTGGAGCACACCATTAAAAACGCG
TCCAAATTAATCTATGTCGTACACAAAAAGCAGCGATCCAACAGCAGCCA
CAGCAGAAGCACCAACAGAAACAACAGCAATAGCAGCAACATACGACAGA
AAAGGAAGACGAGTAAAATCCAAAAAAGCAATAGCAATAGCAACAGCAAA
CAGCAGTCTCTGAAACCTTCCAA
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protein sequence of NO08G00740.1

>NO08G00740.1-protein ID=NO08G00740.1-protein|Name=NO08G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MLRTGCQQHQPGEMSETEAVPDTPVEETPNAEEPLNDEGKLYVGNLAFKT
TEDGLREAFGSHGEITFARVISDRDSGRSRGFGFVTFAEKDEAQLAIDAL
NETELDGRTIRVNFAQPRDPNAPRPPRRSYRGRGRGRGFRGGRARGENGG
EGAAAAPES*
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Synonyms
Publications