NO08G00740.1, NO08G00740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00740.1
Unique NameNO08G00740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1627
Alignment locationchr8:249992..251914 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:249992..251914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G00740.1 vs.
Match: EWM26565.1 (cold-inducible rna-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 211.1 bits (536), Expect = 2.600e-51
Identity = 114/146 (78.08%), Postives = 124/146 (84.93%), Query Frame = 0 
Query:   18 EAVPDTPVEETP-NAEEPLNDEGKLYVGNLAFKTTEDGLREAFGSHGEITFARVISDRDSGRSRGFGFVTFAEKDEAQLAIDALNETELDGRTIRVNFAQPRDPNAPRPPRRSYRGRGRGRGFRGGRARGENGGEG---AAAAPES 160
            EAV  T VEET  N EE LNDEGKLY+GNL+FKTTEDGLREAF  HGE++FARVISDRD+GRSRGFGFVTF  K++AQ AIDALNETELDGR IRVNFAQPRDPNAPR P RSYRGRGRGRG+RG R RGE GG+G    +AAPES
Sbjct:   24 EAVASTAVEETSKNEEEALNDEGKLYIGNLSFKTTEDGLREAFSEHGEVSFARVISDRDTGRSRGFGFVTFTNKEDAQGAIDALNETELDGRPIRVNFAQPRDPNAPRRPPRSYRGRGRGRGYRGPRNRGEGGGDGGGEGSAAPES 169
The following BLAST results are available for this feature:
BLAST of NO08G00740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26565.12.600e-5178.08cold-inducible rna-binding protein [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00740NO08G00740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00740.1NO08G00740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00740.1.cds1NO08G00740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00740.1.cds2NO08G00740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00740.1.cds3NO08G00740.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00740.1 ID=NO08G00740.1|Name=NO08G00740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1627bp
GATCGGCACGTTTTATGCGTCCAAGCCCGCGTCAGGATTTGCGTGGAAAA
GCGTGGGGAAAGGTAACATAAGCGGAGTGAAAGAAAGGGCAGAGCGAGAC
ATCTGTAAACCGCTTGCTTGACATGGTCTTGTCTGATATCCCTGTCATGT
GTGCTGGATTTTATAGATCGGGCTCTAGCAGGGAAATTACTGAGACTGAG
ACTGATCTCAATAGGGAATGTTAGGGGAGAATGGACGGCCACGGGAAAGA
GGGCGAGGCTCAAAGCGACACCTAGGCCTGGAGAACAACTCAACTTGCCC
TTCCTCCACCCACCCAATGCCCCATCTGCTCGTCCTAATCCTTTCCATCT
ATGCTACGCACAGGGTGCCAGCAGCATCAACCAGGAGAGATGTCTGAAAC
GGAGGCGGTGCCTGATACCCCGGTGGAGGAGACCCCCAACGCTGAGGAGC
CCTTGAACGATGAGGGAAAATTGTACGTCGGCAACTTGGCGTTTAAGACC
ACGGAGGATGGCCTCCGGGAGGCGTTTGGGAGCCACGGCGAGATCACCTT
TGCGCGCGTCATCAGTGACCGGGATTCCGGCCGCTCCAGGGGCTTCGGCT
TCGTGACCTTCGCCGAGAAGGATGAGGCGCAGCTGGCTATTGACGCGCTC
AACGAGACGGAGCTGGACGGACGTACTATCCGGGTGAACTTTGCTCAGCC
CCGTGACCCGAACGCTCCTCGTCCCCCTCGCCGCAGCTACAGAGGCCGTG
GCCGTGGTCGTGGTTTTCGTGGCGGGCGTGCTCGGGGGGAGAATGGAGGT
GAAGGGGCCGCCGCTGCCCCCGAATCCTAAAACTGCATAATCTCTAAAAA
GGATGAAACGAGAGGAGGTAGCGAGAGGAAGGAGGGATGGTTTGAGTGCC
TCTCCTGTATGTGAGTTTGCTAGCTGCTCTACGTCCAGTGGTTGACTTGG
CAGTAGATTTGGAGGATGGTCAGGTGTAGGAGCGGAGTCGGTTCTATCTT
TCATATCACAGTTTTTTGTTTCTAAATGTGTGGAGAGGTGGTAGGTATCA
AGTGCGTCACACCTCCTTCCCGCCGCCGCTGCTGTTGCTGCCACCACCAG
CGTGTCTTCACATTACTTGCAAGAGGAATCAATGTGGAAGTGCTGTGGTG
GTGTTGGCGGTGGAAGTGGAGCGGGAAGAGAGGGGGTGCAGGGAGAGGGA
ATGCCTGCCAAAGAATGGGCTACAGAAAGGGGGAAAGTTTGGAGGCAAAG
AGGACACGACTAACGGGAAGGAGGGAGGGAGAAAGAAGAGAGGAAGGTGA
TGGAGGGAGGATTGGTACTATGATGAAGAGATGGCAGGAGAGAGCGAGAA
GGAGAGAGAAGTGACGGAGACAGAGAAGGAGATGGACAGCAACTCGCGAA
AGCAATGCAAGGATAAGCACAAGCAGCCCCTTGGAGCACACCATTAAAAA
CGCGTCCAAATTAATCTATGTCGTACACAAAAAGCAGCGATCCAACAGCA
GCCACAGCAGAAGCACCAACAGAAACAACAGCAATAGCAGCAACATACGA
CAGAAAAGGAAGACGAGTAAAATCCAAAAAAGCAATAGCAATAGCAACAG
CAAACAGCAGTCTCTGAAACCTTCCAA
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protein sequence of NO08G00740.1

>NO08G00740.1-protein ID=NO08G00740.1-protein|Name=NO08G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MLRTGCQQHQPGEMSETEAVPDTPVEETPNAEEPLNDEGKLYVGNLAFKT
TEDGLREAFGSHGEITFARVISDRDSGRSRGFGFVTFAEKDEAQLAIDAL
NETELDGRTIRVNFAQPRDPNAPRPPRRSYRGRGRGRGFRGGRARGENGG
EGAAAAPES*
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mRNA from alignment at chr8:249992..251914-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00740.1 ID=NO08G00740.1|Name=NO08G00740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1923bp|location=Sequence derived from alignment at chr8:249992..251914- (Nannochloropsis oceanica)
GATCGGCACGTTTTATGCGTCCAAGCCCGCGTCAGGATTTGCGTGGAAAA
GCGTGGGGAAAGGTAACATAAGCGGAGTGAAAGAAAGGGCAGAGCGAGAC
ATCTGTAAACCGCTTGCTTGACATGGTCTTGTCTGATATCCCTGTCATGT
GTGCTGGATTTTATAGATCGGGCTCTAGCAGGGAAATTACTGAGACTGAG
ACTGATCTCAATAGGGAATGTTAGGGGAGAATGGACGGCCACGGGAAAGA
GGGCGAGGCTCAAAGCGACACCTAGGCCTGGAGAACAACTCAACTTGCCC
TTCCTCCACCCACCCAATGCCCCATCTGCTCGTCCTAATCCTTTCCATCT
ATGCTACGCACAGGGTGCCAGCAGCATCAACCAGGAGAGATGTCTGAAAC
GGAGGCGGTGCCTGATACCCCGGTGGAGGAGACCCCCAACGCTGAGGAGC
CCTTGAACGATGTAAGTATTTTATCAAACAAGGAGAGGGGAGGGCGAGGA
GCGCAACACGCATAGGCATGGCACGAGAAAAAGTGCGAAGGGTTGACCTT
TTGTGTGTCCTTGATAACTTTTCCAACAGGAGGGAAAATTGTACGTCGGC
AACTTGGCGTTTAAGACCACGGAGGATGGCCTCCGGGAGGCGTTTGGGAG
CCACGGCGAGATCACCTTTGCGCGCGTCATCAGTGACCGGGATTCCGGCC
GCTCCAGGTACGTGTTAAGCTTAAATCATACGTCGAGACAGTGCGCCATT
GAGGCCTGAATGTCTGATTTCAGTGTGCAGACTCATTTCTTCCTCATGCT
TCGTCGCTAACTCTCTACTAACCTCCTCCCTCCGATCCACTACTCCACTC
CACTCGCACCACTCCCTCCCCTCACACGCCAACAGGGGCTTCGGCTTCGT
GACCTTCGCCGAGAAGGATGAGGCGCAGCTGGCTATTGACGCGCTCAACG
AGACGGAGCTGGACGGACGTACTATCCGGGTGAACTTTGCTCAGCCCCGT
GACCCGAACGCTCCTCGTCCCCCTCGCCGCAGCTACAGAGGCCGTGGCCG
TGGTCGTGGTTTTCGTGGCGGGCGTGCTCGGGGGGAGAATGGAGGTGAAG
GGGCCGCCGCTGCCCCCGAATCCTAAAACTGCATAATCTCTAAAAAGGAT
GAAACGAGAGGAGGTAGCGAGAGGAAGGAGGGATGGTTTGAGTGCCTCTC
CTGTATGTGAGTTTGCTAGCTGCTCTACGTCCAGTGGTTGACTTGGCAGT
AGATTTGGAGGATGGTCAGGTGTAGGAGCGGAGTCGGTTCTATCTTTCAT
ATCACAGTTTTTTGTTTCTAAATGTGTGGAGAGGTGGTAGGTATCAAGTG
CGTCACACCTCCTTCCCGCCGCCGCTGCTGTTGCTGCCACCACCAGCGTG
TCTTCACATTACTTGCAAGAGGAATCAATGTGGAAGTGCTGTGGTGGTGT
TGGCGGTGGAAGTGGAGCGGGAAGAGAGGGGGTGCAGGGAGAGGGAATGC
CTGCCAAAGAATGGGCTACAGAAAGGGGGAAAGTTTGGAGGCAAAGAGGA
CACGACTAACGGGAAGGAGGGAGGGAGAAAGAAGAGAGGAAGGTGATGGA
GGGAGGATTGGTACTATGATGAAGAGATGGCAGGAGAGAGCGAGAAGGAG
AGAGAAGTGACGGAGACAGAGAAGGAGATGGACAGCAACTCGCGAAAGCA
ATGCAAGGATAAGCACAAGCAGCCCCTTGGAGCACACCATTAAAAACGCG
TCCAAATTAATCTATGTCGTACACAAAAAGCAGCGATCCAACAGCAGCCA
CAGCAGAAGCACCAACAGAAACAACAGCAATAGCAGCAACATACGACAGA
AAAGGAAGACGAGTAAAATCCAAAAAAGCAATAGCAATAGCAACAGCAAA
CAGCAGTCTCTGAAACCTTCCAA
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Coding sequence (CDS) from alignment at chr8:249992..251914-

>NO08G00740.1 ID=NO08G00740.1|Name=NO08G00740.1|organism=Nannochloropsis oceanica|type=CDS|length=480bp|location=Sequence derived from alignment at chr8:249992..251914- (Nannochloropsis oceanica)
ATGCTACGCACAGGGTGCCAGCAGCATCAACCAGGAGAGATGTCTGAAAC
GGAGGCGGTGCCTGATACCCCGGTGGAGGAGACCCCCAACGCTGAGGAGC
CCTTGAACGATGAGGGAAAATTGTACGTCGGCAACTTGGCGTTTAAGACC
ACGGAGGATGGCCTCCGGGAGGCGTTTGGGAGCCACGGCGAGATCACCTT
TGCGCGCGTCATCAGTGACCGGGATTCCGGCCGCTCCAGGGGCTTCGGCT
TCGTGACCTTCGCCGAGAAGGATGAGGCGCAGCTGGCTATTGACGCGCTC
AACGAGACGGAGCTGGACGGACGTACTATCCGGGTGAACTTTGCTCAGCC
CCGTGACCCGAACGCTCCTCGTCCCCCTCGCCGCAGCTACAGAGGCCGTG
GCCGTGGTCGTGGTTTTCGTGGCGGGCGTGCTCGGGGGGAGAATGGAGGT
GAAGGGGCCGCCGCTGCCCCCGAATCCTAA
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Synonyms
Publications