NO08G00680, NO08G00680 (gene) Nannochloropsis oceanica

Overview
NameNO08G00680
Unique NameNO08G00680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3208
Alignment locationchr8:234414..237621 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:234414..237621 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO08G00680 vs. NCBI_GenBank
Match: EWM26567.1 (hypothetical protein Naga_100084g6 [Nannochloropsis gaditana])

HSP 1 Score: 158.7 bits (400), Expect = 1.900e-35
Identity = 85/143 (59.44%), Postives = 100/143 (69.93%), Query Frame = 0 
Query:   53 MGGDSKVSVVVKKEEKEGTEMIHLTKPGQKYTTPTPGVPERIFYESLYEQNPESFMAQEYCVQYGILEEDEAMKIFKKVQARKAKGA-IYSPSPVKXXXXXXXXXXXXXXXXXXXXXXXXXXAPVDTGLMEGGVEGVGSMSFA 195
            MG D KV +VVKKEEK+GTE+IHL  PGQKY TPTPGVPERIFYE+LY+QNP SFMAQEYC+ YGIL+E+EA+ + K+VQARK KG+ + SPSPVK                            V TGLMEGG+EGVGS +FA
Sbjct:    1 MGEDVKVPLVVKKEEKDGTEVIHLRNPGQKYPTPTPGVPERIFYETLYQQNPNSFMAQEYCILYGILDEEEAISVNKQVQARKLKGSGVSSPSPVK----KAATVKKAGGEGRKRKSRLEDDVVVKTGLMEGGMEGVGSTAFA 139
[Close]
BLAST of NO08G00680 vs. NCBI_GenBank
Match: GAX27491.1 (hypothetical protein FisN_23Hh043 [Fistulifera solaris])

HSP 1 Score: 79.3 bits (194), Expect = 1.400e-11
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 0 
Query:   78 KPGQKYTTPTPGVPERIFYESLYEQNPESFMAQEYCVQYGILEEDEAMKIFKKVQARKAKGAIYSP-SPVK 148
            KPGQK+ TPTPG  +R+FYE+L +Q P+SFMAQE+CV YG+L  + A ++ ++VQ RK +     P SPVK
Sbjct:    9 KPGQKFPTPTPGFGDRVFYETLLQQRPDSFMAQEWCVNYGVLSYERAEELCRQVQERKRRMRAGLPASPVK 79
[Close]
BLAST of NO08G00680 vs. NCBI_GenBank
Match: GAX26515.1 (hypothetical protein FisN_23Lh043 [Fistulifera solaris])

HSP 1 Score: 79.3 bits (194), Expect = 1.400e-11
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 0 
Query:   78 KPGQKYTTPTPGVPERIFYESLYEQNPESFMAQEYCVQYGILEEDEAMKIFKKVQARKAKGAIYSP-SPVK 148
            KPGQK+ TPTPG  +R+FYE+L +Q P+SFMAQE+CV YG+L  + A ++ ++VQ RK +     P SPVK
Sbjct:    9 KPGQKFPTPTPGFGDRVFYETLLQQRPDSFMAQEWCVNYGVLSYERAEELCRQVQERKRRMRAGLPASPVK 79
[Close]
BLAST of NO08G00680 vs. NCBI_GenBank
Match: XP_002181495.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46709.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 78.6 bits (192), Expect = 2.400e-11
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 0 
Query:   78 KPGQKYTTPTPGVPERIFYESLYEQNPESFMAQEYCVQYGILEEDEAMKIFKKVQARK 136
            KPGQK+ TPTPG  +R+FYE+L  Q P+S MAQE+CV YG+L  DEA ++ KKV  RK
Sbjct:    6 KPGQKFPTPTPGFGDRVFYETLLRQRPDSIMAQEWCVSYGVLPHDEAERLHKKVTDRK 63
[Close]
BLAST of NO08G00680 vs. NCBI_GenBank
Match: XP_012207969.1 (hypothetical protein SPRG_13205 [Saprolegnia parasitica CBS 223.65] >KDO21313.1 hypothetical protein SPRG_13205 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 75.1 bits (183), Expect = 2.700e-10
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 0 
Query:   56 DSKVSVVVKKEEKEGTEMIHLTKPGQKYTTPTPGVPERIFYESLYEQNPESFMAQEYCVQYGILEEDEAMKIFK 130
            D   +     EE+   E+    KPGQK+ TP+PG  +R+FYESL  QNPES MA+++C++YG+LE DEA  + K
Sbjct:  990 DPATTTTTMDEEEWSKELEANRKPGQKHPTPSPGFADRVFYESLLRQNPESKMAKKWCIEYGVLEADEAAALCK 1063
[Close]
BLAST of NO08G00680 vs. NCBI_GenBank
Match: XP_008617962.1 (hypothetical protein SDRG_13643 [Saprolegnia diclina VS20] >EQC28565.1 hypothetical protein SDRG_13643 [Saprolegnia diclina VS20])

HSP 1 Score: 74.3 bits (181), Expect = 4.600e-10
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = 0 
Query:   66 EEKEGTEMIHLTKPGQKYTTPTPGVPERIFYESLYEQNPESFMAQEYCVQYGILEEDEAMKIFK 130
            EE+   E+    KPGQK+ TP+PG  +R+FYESL  QNPES MA+++C++YG+LE DEA  + K
Sbjct:    3 EEEWSKELEANRKPGQKHPTPSPGFADRVFYESLLRQNPESKMAKKWCIEYGVLEADEAAALCK 66
[Close]
BLAST of NO08G00680 vs. NCBI_GenBank
Match: OQS04513.1 (hypothetical protein THRCLA_03261, partial [Thraustotheca clavata])

HSP 1 Score: 73.2 bits (178), Expect = 1.000e-9
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 0 
Query:   55 GDSKVSVVVKKEEKEGTEMIHLTKPGQKYTTPTPGVPERIFYESLYEQNPESFMAQEYCVQYGILEEDEAMKI-------FKKVQARKAKG 139
            G  +  V V  + K   E+    KPGQK+ TP+PG  +R+FYESL  QNPES MA+++C++YG+LE DEA  +       FK ++  K  G
Sbjct:  827 GQQQDWVPVVDDRKWSKELEANRKPGQKHPTPSPGFADRVFYESLLRQNPESKMAKKWCIEYGVLEWDEAAALCNALSIPFKAIKEEKKTG 917
[Close]
BLAST of NO08G00680 vs. NCBI_GenBank
Match: EJK50226.1 (hypothetical protein THAOC_30827 [Thalassiosira oceanica])

HSP 1 Score: 72.8 bits (177), Expect = 1.300e-9
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 0 
Query:   76 LTKPGQKYTTPTPGVPERIFYESLYEQNPESFMAQEYCVQYGILEEDEAMKIFKKVQARK 136
            L + GQK+ TPTPG  +R+FYE+L +Q P+S MA E+CVQYG+L+ D A K +KKV  RK
Sbjct:   44 LQQLGQKHPTPTPGNGDRVFYETLLKQRPDSHMALEWCVQYGVLDSDAAHKAYKKVLKRK 103
[Close]
BLAST of NO08G00680 vs. NCBI_GenBank
Match: XP_002296465.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED87161.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 72.0 bits (175), Expect = 2.300e-9
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 0 
Query:   78 KPGQKYTTPTPGVPERIFYESLYEQNPESFMAQEYCVQYGILEEDEAMKIFKKVQAR 135
            K GQK+ TPTPG  +R+FYE+L  Q P+S MAQE+CV YG+L E+EA K +K V  R
Sbjct:   10 KTGQKFPTPTPGNGDRVFYETLLRQRPDSEMAQEWCVNYGVLSEEEAAKAYKAVVKR 66
[Close]
BLAST of NO08G00680 vs. NCBI_GenBank
Match: XP_009822782.1 (hypothetical protein H257_01326 [Aphanomyces astaci] >ETV87919.1 hypothetical protein H257_01326 [Aphanomyces astaci])

HSP 1 Score: 70.5 bits (171), Expect = 6.600e-9
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = 0 
Query:   66 EEKEGTEMIHLTKPGQKYTTPTPGVPERIFYESLYEQNPESFMAQEYCVQYGILEEDEAMKIFKKV-QARKAKGAIYSPSPVK 148
            EE+   E     KPGQK+ TP+PG  +R+FYESL  QNP+S MA+++C++YG+LE D+A  + K++  +  +KGA    S  K
Sbjct:    3 EEEWSKEQEANRKPGQKHPTPSPGFADRVFYESLLSQNPKSKMAKKWCLEYGVLEWDDAAVLCKELGVSYSSKGAAKKSSEPK 85
The following BLAST results are available for this feature:
BLAST of NO08G00680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26567.11.900e-3559.44hypothetical protein Naga_100084g6 [Nannochloropsi... [more]
GAX27491.11.400e-1153.52hypothetical protein FisN_23Hh043 [Fistulifera sol... [more]
GAX26515.11.400e-1153.52hypothetical protein FisN_23Lh043 [Fistulifera sol... [more]
XP_002181495.12.400e-1160.34predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_012207969.12.700e-1047.30hypothetical protein SPRG_13205 [Saprolegnia paras... [more]
XP_008617962.14.600e-1053.13hypothetical protein SDRG_13643 [Saprolegnia dicli... [more]
OQS04513.11.000e-942.86hypothetical protein THRCLA_03261, partial [Thraus... [more]
EJK50226.11.300e-956.67hypothetical protein THAOC_30827 [Thalassiosira oc... [more]
XP_002296465.12.300e-957.89predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_009822782.16.600e-944.58hypothetical protein H257_01326 [Aphanomyces astac... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008994NSK008994Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00680.1NO08G00680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581995gene_3398Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100084g6gene3976Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00680.1NO08G00680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00680 ID=NO08G00680|Name=NO08G00680|organism=Nannochloropsis oceanica|type=gene|length=3208bp
ATTCTCACCATCTTACCAATCTTCTTTTTCTAAATACATTGAAGTCGGTG
CGACTTCAAGGAAGCAACGCATTAAAAACCTGCCCGCACGCACGGCCAAG
TGAGTATGCGAACCTGTCAGGGCCCACACAATGAAGCGTCTATTGCGATT
TTACATTTGGTATAGTCGTTCACACCCTCCCCGTCATTCCGACACCACGA
CTGTTGAGGCTTTTATTTGATGTGGAGGACTTCCACAGGCATCTTAGTCC
GAGACATCCATCTCACATTCTTTTACTCGTCATCGAGGTACCTCCCTCCC
TCCCTCTCAATGATCTGCATGCATGCTACCACGCTCTCTTGCCGCTCGAA
GGCCGCCATGAGTGCGACCAGTGCCCTCTCGTTCTGGCGGATCATGTTGT
ACGATTGCAGCACGCCCCCTGTGGAAGGAGGCAGGGAGGGAGGGAGGGAA
AGGAGAGGCGGTATAGGAGTTGGATGAGAACGAATTATGATTTCTCTTGT
CCTTCAAACACTCCTCATTTGTGCGTCAATGAATCCAAAACCTTACCGAT
CCCGTCCCCTCTCCGTTCCACTTTCCCTACTTCATGACCCCCCCCCGTGC
TCCCTCCCTCCCTCCCTCCCTCCTTACAATTCAGCCACCGTTCCTGATCC
CGATCAGTCATACCCGGATCCGCCAAATTAAACAAGGCCAGCAACTGGCT
TAAATCGTTGCCCCCTCCCTCCGCCTTACCAAAGGCAATATATTCGCTCA
CCACCCCCGCAAGTGACACAACAGTCAGCTGGGACAACTCGTCCTTTGTC
AACACCCCCCGCGGCGTCCATCGATCCGCCTCTTCGAACGACAACGGACC
CAAGGGGCTGGGTGGAAGGGAGGGGCCTCCAGTGGCCGCAGCCGCCTCGG
CAGCAGCAGCCTCCTTAGCGAAGGAGAGTACCTGCGCAAACTCCACCGCG
TTCAATCGGCCGGAGACGGAGTATGTGAGCACAGGGAGACCACACAGGTA
CCCCACTAGAAAATGGCCCGCTTCGTGCCTCAACAGTCGATCTTTATACT
CTTTGTTGATCAGAAACAGCAGGCGATTCACCGCTCCTATCAGGGCGTCA
GGGAATGACAATCCTAAAGAAATGTACAGAAAGGGGATGGACACCAAAAA
TGACGTCGCGAACCACCGGACGATGTCAGGGCCTGGTAATTTGTCCAGCG
TGGTTAGTGCCGAGCCGACAGAAAGCGCCATCACCACTGCAATCCCGCTC
TCCACTCGCTCGACAGCCGGCGAGGCCGTGAACCCCAAGGCCCTCTCCAC
CCTCTCCCTCATGCGGGCATACACCCTCACGTCACTCCGCGACACACCGT
AAAATTCGAGTCGGACCGAGTTCCAGTACTTGAGAAAACCTGATTGAACG
CTGCCGTCCTTCTTCTTTCTAACTTTCATGAGCTCGAGGCCGTCAACCAA
GCGGGTGTCAGCCACCGAGGCCCCTATCGAAAAGACGCCCTGTCCACTTG
AATCCATGTCACGTTGCCGCGGACGGAAGGACGTGGGGTTGTTGATGTCC
GTAACACTATCTTCTTCGTTCAGGCAGGAGGAGACGAGCTCTTCGACCAA
GGGCCAATATTGAGAGGCGTCAGATGCAGGGGGTGGAGGGATAGAAGGGG
GGGGGGAGGAGGACGGGGGAGAGGAGGAAGCACGAAGGCGCGTCGACGTA
GGGCGGACGATTGTGGGAAAACAAATATGGTGATGTTGGCTCTGTAGCCG
TCCCTGAGCTCTAATTGCTGCTGCTGCTGCTGCTTGTCTCGAAGGAACAA
GAACAAAGGCTTGATTTGACCCGGCAAGGAGTGCAAGGAGGAGGGCTGCA
GCCGTAGTTCTGCTGCAAGTGTTGCGCAACCGCCGCTTACAGGTTACTGG
GGTGGTAGCAGAGACCATGCTGCTGCTGCTCCGGCTGGGAAAATGTGCCG
CCGTCTGTGTGTTTTTGCAAAGTTGTTGAGCTACGAGTGTGTGGGGTGGC
TATGTTTGGACTCCTCGCTGAAGCACGGAGAAGGAGTGAGGCAACGGACA
CCTGGCACCTGCGTTTGCCTCACACGACACATAAGTACACGGTACAAGGC
AAGAGAAGATCAAGTCCATTCCAGTCTCAAGCTGCTGGTGCGGGGAGGCA
TGGTTTTTATGAAGGGGCGTGGCGAGTTTTGTCATGGTCGTCATCCCCCC
CTATGTCATGTTTGGGCCTCTCTTGACAGCACATACATGTCCAGGACACA
TCGTCGCCGTGCACCCAAATAGCCATTACAAACGGCTCCAGAGAATTCCA
CGGTCAGATGCTTGCCGAGACCTGGAGCGGAGCGCTGCCGCGAGAAATGG
AGGGCCGCGGCTTTCAGTACTTCTCCCAAAACCACAACTCAACCATCCTC
CTCTTTTCCCACGCGATAGGGGTTCGCCCGCACGCCAGGGGCACGCCCAT
TCGCGCACAAGCCATGGGTGGGGACTCCAAGGTGTCGGTGGTTGTGAAGA
AGGAGGAGAAGGAAGGGACGGAAATGATCCATCTTACAAAGCCAGGCCAA
AAGTACACGACGCCCACCCCTGGTGTCCCTGgtgagagctctgcatgggg
agggagggagagggggagggagagatgggggacgtgacctgccctcgtct
ctcctttcttctcttcgtaacaagaaatatggtattttacgttctttcct
tactctaaggcatcgtacacgtattctcattctctccttttcatactccc
ttgctcgcatcctttcccttccctccacccctccagAACGCATCTTTTAC
GAAAGCCTGTACGAACAAAACCCCGAGTCTTTTATGGCACAAGAATATTG
CGTCCAATACGgttaggaatttcttcctccctcccttcttccttctcctt
ttccccatcccaaccgtcacaccctaagctccctgccctccctcccgccc
gccctctctcagGTATCCTGGAAGAAGACGAGGCCATGAAAATCTTCAAG
AAGGTCCAAGCTCGCAAAGCCAAGGGTGCCATTTACTCTCCTTCTCCCGT
CAAGAAGTCCACAGCAGCAGCAGCAGCAAAAAAAGGAGGAGTGGGGGGAG
CGAAGAAAAAGAAAAGTCGGTTGGATGATGATGCGCCGGTGGACACGGGC
TTGATGGAGGGGGGAGTGGAGGGGGTGGGGTCCATGAGCTTTGCTTAGAA
AGGGGGGG
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protein sequence of NO08G00680.1

>NO08G00680.1-protein ID=NO08G00680.1-protein|Name=NO08G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MLAETWSGALPREMEGRGFQYFSQNHNSTILLFSHAIGVRPHARGTPIRA
QAMGGDSKVSVVVKKEEKEGTEMIHLTKPGQKYTTPTPGVPERIFYESLY
EQNPESFMAQEYCVQYGILEEDEAMKIFKKVQARKAKGAIYSPSPVKKST
AAAAAKKGGVGGAKKKKSRLDDDAPVDTGLMEGGVEGVGSMSFA*
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Synonyms
Publications