NO08G00680.1, NO08G00680.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G00680.1
Unique Name	NO08G00680.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2902
Alignment location	chr8:234414..237621 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:234414..237621 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO08G00680.1 vs.
Match: EWM26567.1 (hypothetical protein Naga_100084g6 [Nannochloropsis gaditana])

HSP 1 Score: 185.3 bits (469), Expect = 1.800e-43
Identity = 99/143 (69.23%), Postives = 117/143 (81.82%), Query Frame = 0

Query:   53 MGGDSKVSVVVKKEEKEGTEMIHLTKPGQKYTTPTPGVPERIFYESLYEQNPESFMAQEYCVQYGILEEDEAMKIFKKVQARKAKGA-IYSPSPVKKSTAAAAAKKGGVGGAKKKKSRLDDDAPVDTGLMEGGVEGVGSMSFA 195
            MG D KV +VVKKEEK+GTE+IHL  PGQKY TPTPGVPERIFYE+LY+QNP SFMAQEYC+ YGIL+E+EA+ + K+VQARK KG+ + SPSPVKK   AA  KK G G  +K+KSRL+DD  V TGLMEGG+EGVGS +FA
Sbjct:    1 MGEDVKVPLVVKKEEKDGTEVIHLRNPGQKYPTPTPGVPERIFYETLYQQNPNSFMAQEYCILYGILDEEEAISVNKQVQARKLKGSGVSSPSPVKK---AATVKKAG-GEGRKRKSRLEDDVVVKTGLMEGGMEGVGSTAFA 139

The following BLAST results are available for this feature:

BLAST of NO08G00680.1 vs.

BLAST of NO08G00680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26567.1	1.800e-43	69.23	hypothetical protein Naga_100084g6 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO08G00680	NO08G00680	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO08G00680.1	NO08G00680.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO08G00680.1.cds1	NO08G00680.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00680.1.cds2	NO08G00680.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00680.1.cds3	NO08G00680.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:234414..237621-
coding sequence from alignment at chr8:234414..237621-

mRNA sequence

>NO08G00680.1 ID=NO08G00680.1|Name=NO08G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=2902bp
ATTCTCACCATCTTACCAATCTTCTTTTTCTAAATACATTGAAGTCGGTG
CGACTTCAAGGAAGCAACGCATTAAAAACCTGCCCGCACGCACGGCCAAG
TGAGTATGCGAACCTGTCAGGGCCCACACAATGAAGCGTCTATTGCGATT
TTACATTTGGTATAGTCGTTCACACCCTCCCCGTCATTCCGACACCACGA
CTGTTGAGGCTTTTATTTGATGTGGAGGACTTCCACAGGCATCTTAGTCC
GAGACATCCATCTCACATTCTTTTACTCGTCATCGAGGTACCTCCCTCCC
TCCCTCTCAATGATCTGCATGCATGCTACCACGCTCTCTTGCCGCTCGAA
GGCCGCCATGAGTGCGACCAGTGCCCTCTCGTTCTGGCGGATCATGTTGT
ACGATTGCAGCACGCCCCCTGTGGAAGGAGGCAGGGAGGGAGGGAGGGAA
AGGAGAGGCGGTATAGGAGTTGGATGAGAACGAATTATGATTTCTCTTGT
CCTTCAAACACTCCTCATTTGTGCGTCAATGAATCCAAAACCTTACCGAT
CCCGTCCCCTCTCCGTTCCACTTTCCCTACTTCATGACCCCCCCCCGTGC
TCCCTCCCTCCCTCCCTCCCTCCTTACAATTCAGCCACCGTTCCTGATCC
CGATCAGTCATACCCGGATCCGCCAAATTAAACAAGGCCAGCAACTGGCT
TAAATCGTTGCCCCCTCCCTCCGCCTTACCAAAGGCAATATATTCGCTCA
CCACCCCCGCAAGTGACACAACAGTCAGCTGGGACAACTCGTCCTTTGTC
AACACCCCCCGCGGCGTCCATCGATCCGCCTCTTCGAACGACAACGGACC
CAAGGGGCTGGGTGGAAGGGAGGGGCCTCCAGTGGCCGCAGCCGCCTCGG
CAGCAGCAGCCTCCTTAGCGAAGGAGAGTACCTGCGCAAACTCCACCGCG
TTCAATCGGCCGGAGACGGAGTATGTGAGCACAGGGAGACCACACAGGTA
CCCCACTAGAAAATGGCCCGCTTCGTGCCTCAACAGTCGATCTTTATACT
CTTTGTTGATCAGAAACAGCAGGCGATTCACCGCTCCTATCAGGGCGTCA
GGGAATGACAATCCTAAAGAAATGTACAGAAAGGGGATGGACACCAAAAA
TGACGTCGCGAACCACCGGACGATGTCAGGGCCTGGTAATTTGTCCAGCG
TGGTTAGTGCCGAGCCGACAGAAAGCGCCATCACCACTGCAATCCCGCTC
TCCACTCGCTCGACAGCCGGCGAGGCCGTGAACCCCAAGGCCCTCTCCAC
CCTCTCCCTCATGCGGGCATACACCCTCACGTCACTCCGCGACACACCGT
AAAATTCGAGTCGGACCGAGTTCCAGTACTTGAGAAAACCTGATTGAACG
CTGCCGTCCTTCTTCTTTCTAACTTTCATGAGCTCGAGGCCGTCAACCAA
GCGGGTGTCAGCCACCGAGGCCCCTATCGAAAAGACGCCCTGTCCACTTG
AATCCATGTCACGTTGCCGCGGACGGAAGGACGTGGGGTTGTTGATGTCC
GTAACACTATCTTCTTCGTTCAGGCAGGAGGAGACGAGCTCTTCGACCAA
GGGCCAATATTGAGAGGCGTCAGATGCAGGGGGTGGAGGGATAGAAGGGG
GGGGGGAGGAGGACGGGGGAGAGGAGGAAGCACGAAGGCGCGTCGACGTA
GGGCGGACGATTGTGGGAAAACAAATATGGTGATGTTGGCTCTGTAGCCG
TCCCTGAGCTCTAATTGCTGCTGCTGCTGCTGCTTGTCTCGAAGGAACAA
GAACAAAGGCTTGATTTGACCCGGCAAGGAGTGCAAGGAGGAGGGCTGCA
GCCGTAGTTCTGCTGCAAGTGTTGCGCAACCGCCGCTTACAGGTTACTGG
GGTGGTAGCAGAGACCATGCTGCTGCTGCTCCGGCTGGGAAAATGTGCCG
CCGTCTGTGTGTTTTTGCAAAGTTGTTGAGCTACGAGTGTGTGGGGTGGC
TATGTTTGGACTCCTCGCTGAAGCACGGAGAAGGAGTGAGGCAACGGACA
CCTGGCACCTGCGTTTGCCTCACACGACACATAAGTACACGGTACAAGGC
AAGAGAAGATCAAGTCCATTCCAGTCTCAAGCTGCTGGTGCGGGGAGGCA
TGGTTTTTATGAAGGGGCGTGGCGAGTTTTGTCATGGTCGTCATCCCCCC
CTATGTCATGTTTGGGCCTCTCTTGACAGCACATACATGTCCAGGACACA
TCGTCGCCGTGCACCCAAATAGCCATTACAAACGGCTCCAGAGAATTCCA
CGGTCAGATGCTTGCCGAGACCTGGAGCGGAGCGCTGCCGCGAGAAATGG
AGGGCCGCGGCTTTCAGTACTTCTCCCAAAACCACAACTCAACCATCCTC
CTCTTTTCCCACGCGATAGGGGTTCGCCCGCACGCCAGGGGCACGCCCAT
TCGCGCACAAGCCATGGGTGGGGACTCCAAGGTGTCGGTGGTTGTGAAGA
AGGAGGAGAAGGAAGGGACGGAAATGATCCATCTTACAAAGCCAGGCCAA
AAGTACACGACGCCCACCCCTGGTGTCCCTGAACGCATCTTTTACGAAAG
CCTGTACGAACAAAACCCCGAGTCTTTTATGGCACAAGAATATTGCGTCC
AATACGGTATCCTGGAAGAAGACGAGGCCATGAAAATCTTCAAGAAGGTC
CAAGCTCGCAAAGCCAAGGGTGCCATTTACTCTCCTTCTCCCGTCAAGAA
GTCCACAGCAGCAGCAGCAGCAAAAAAAGGAGGAGTGGGGGGAGCGAAGA
AAAAGAAAAGTCGGTTGGATGATGATGCGCCGGTGGACACGGGCTTGATG
GAGGGGGGAGTGGAGGGGGTGGGGTCCATGAGCTTTGCTTAGAAAGGGGG
GG

protein sequence of NO08G00680.1

>NO08G00680.1-protein ID=NO08G00680.1-protein|Name=NO08G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MLAETWSGALPREMEGRGFQYFSQNHNSTILLFSHAIGVRPHARGTPIRA
QAMGGDSKVSVVVKKEEKEGTEMIHLTKPGQKYTTPTPGVPERIFYESLY
EQNPESFMAQEYCVQYGILEEDEAMKIFKKVQARKAKGAIYSPSPVKKST
AAAAAKKGGVGGAKKKKSRLDDDAPVDTGLMEGGVEGVGSMSFA*

mRNA from alignment at chr8:234414..237621-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO08G00680.1 ID=NO08G00680.1|Name=NO08G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=3208bp|location=Sequence derived from alignment at chr8:234414..237621- (Nannochloropsis oceanica)
ATTCTCACCATCTTACCAATCTTCTTTTTCTAAATACATTGAAGTCGGTG
CGACTTCAAGGAAGCAACGCATTAAAAACCTGCCCGCACGCACGGCCAAG
TGAGTATGCGAACCTGTCAGGGCCCACACAATGAAGCGTCTATTGCGATT
TTACATTTGGTATAGTCGTTCACACCCTCCCCGTCATTCCGACACCACGA
CTGTTGAGGCTTTTATTTGATGTGGAGGACTTCCACAGGCATCTTAGTCC
GAGACATCCATCTCACATTCTTTTACTCGTCATCGAGGTACCTCCCTCCC
TCCCTCTCAATGATCTGCATGCATGCTACCACGCTCTCTTGCCGCTCGAA
GGCCGCCATGAGTGCGACCAGTGCCCTCTCGTTCTGGCGGATCATGTTGT
ACGATTGCAGCACGCCCCCTGTGGAAGGAGGCAGGGAGGGAGGGAGGGAA
AGGAGAGGCGGTATAGGAGTTGGATGAGAACGAATTATGATTTCTCTTGT
CCTTCAAACACTCCTCATTTGTGCGTCAATGAATCCAAAACCTTACCGAT
CCCGTCCCCTCTCCGTTCCACTTTCCCTACTTCATGACCCCCCCCCGTGC
TCCCTCCCTCCCTCCCTCCCTCCTTACAATTCAGCCACCGTTCCTGATCC
CGATCAGTCATACCCGGATCCGCCAAATTAAACAAGGCCAGCAACTGGCT
TAAATCGTTGCCCCCTCCCTCCGCCTTACCAAAGGCAATATATTCGCTCA
CCACCCCCGCAAGTGACACAACAGTCAGCTGGGACAACTCGTCCTTTGTC
AACACCCCCCGCGGCGTCCATCGATCCGCCTCTTCGAACGACAACGGACC
CAAGGGGCTGGGTGGAAGGGAGGGGCCTCCAGTGGCCGCAGCCGCCTCGG
CAGCAGCAGCCTCCTTAGCGAAGGAGAGTACCTGCGCAAACTCCACCGCG
TTCAATCGGCCGGAGACGGAGTATGTGAGCACAGGGAGACCACACAGGTA
CCCCACTAGAAAATGGCCCGCTTCGTGCCTCAACAGTCGATCTTTATACT
CTTTGTTGATCAGAAACAGCAGGCGATTCACCGCTCCTATCAGGGCGTCA
GGGAATGACAATCCTAAAGAAATGTACAGAAAGGGGATGGACACCAAAAA
TGACGTCGCGAACCACCGGACGATGTCAGGGCCTGGTAATTTGTCCAGCG
TGGTTAGTGCCGAGCCGACAGAAAGCGCCATCACCACTGCAATCCCGCTC
TCCACTCGCTCGACAGCCGGCGAGGCCGTGAACCCCAAGGCCCTCTCCAC
CCTCTCCCTCATGCGGGCATACACCCTCACGTCACTCCGCGACACACCGT
AAAATTCGAGTCGGACCGAGTTCCAGTACTTGAGAAAACCTGATTGAACG
CTGCCGTCCTTCTTCTTTCTAACTTTCATGAGCTCGAGGCCGTCAACCAA
GCGGGTGTCAGCCACCGAGGCCCCTATCGAAAAGACGCCCTGTCCACTTG
AATCCATGTCACGTTGCCGCGGACGGAAGGACGTGGGGTTGTTGATGTCC
GTAACACTATCTTCTTCGTTCAGGCAGGAGGAGACGAGCTCTTCGACCAA
GGGCCAATATTGAGAGGCGTCAGATGCAGGGGGTGGAGGGATAGAAGGGG
GGGGGGAGGAGGACGGGGGAGAGGAGGAAGCACGAAGGCGCGTCGACGTA
GGGCGGACGATTGTGGGAAAACAAATATGGTGATGTTGGCTCTGTAGCCG
TCCCTGAGCTCTAATTGCTGCTGCTGCTGCTGCTTGTCTCGAAGGAACAA
GAACAAAGGCTTGATTTGACCCGGCAAGGAGTGCAAGGAGGAGGGCTGCA
GCCGTAGTTCTGCTGCAAGTGTTGCGCAACCGCCGCTTACAGGTTACTGG
GGTGGTAGCAGAGACCATGCTGCTGCTGCTCCGGCTGGGAAAATGTGCCG
CCGTCTGTGTGTTTTTGCAAAGTTGTTGAGCTACGAGTGTGTGGGGTGGC
TATGTTTGGACTCCTCGCTGAAGCACGGAGAAGGAGTGAGGCAACGGACA
CCTGGCACCTGCGTTTGCCTCACACGACACATAAGTACACGGTACAAGGC
AAGAGAAGATCAAGTCCATTCCAGTCTCAAGCTGCTGGTGCGGGGAGGCA
TGGTTTTTATGAAGGGGCGTGGCGAGTTTTGTCATGGTCGTCATCCCCCC
CTATGTCATGTTTGGGCCTCTCTTGACAGCACATACATGTCCAGGACACA
TCGTCGCCGTGCACCCAAATAGCCATTACAAACGGCTCCAGAGAATTCCA
CGGTCAGATGCTTGCCGAGACCTGGAGCGGAGCGCTGCCGCGAGAAATGG
AGGGCCGCGGCTTTCAGTACTTCTCCCAAAACCACAACTCAACCATCCTC
CTCTTTTCCCACGCGATAGGGGTTCGCCCGCACGCCAGGGGCACGCCCAT
TCGCGCACAAGCCATGGGTGGGGACTCCAAGGTGTCGGTGGTTGTGAAGA
AGGAGGAGAAGGAAGGGACGGAAATGATCCATCTTACAAAGCCAGGCCAA
AAGTACACGACGCCCACCCCTGGTGTCCCTGGTGAGAGCTCTGCATGGGG
AGGGAGGGAGAGGGGGAGGGAGAGATGGGGGACGTGACCTGCCCTCGTCT
CTCCTTTCTTCTCTTCGTAACAAGAAATATGGTATTTTACGTTCTTTCCT
TACTCTAAGGCATCGTACACGTATTCTCATTCTCTCCTTTTCATACTCCC
TTGCTCGCATCCTTTCCCTTCCCTCCACCCCTCCAGAACGCATCTTTTAC
GAAAGCCTGTACGAACAAAACCCCGAGTCTTTTATGGCACAAGAATATTG
CGTCCAATACGGTTAGGAATTTCTTCCTCCCTCCCTTCTTCCTTCTCCTT
TTCCCCATCCCAACCGTCACACCCTAAGCTCCCTGCCCTCCCTCCCGCCC
GCCCTCTCTCAGGTATCCTGGAAGAAGACGAGGCCATGAAAATCTTCAAG
AAGGTCCAAGCTCGCAAAGCCAAGGGTGCCATTTACTCTCCTTCTCCCGT
CAAGAAGTCCACAGCAGCAGCAGCAGCAAAAAAAGGAGGAGTGGGGGGAG
CGAAGAAAAAGAAAAGTCGGTTGGATGATGATGCGCCGGTGGACACGGGC
TTGATGGAGGGGGGAGTGGAGGGGGTGGGGTCCATGAGCTTTGCTTAGAA
AGGGGGGG

Coding sequence (CDS) from alignment at chr8:234414..237621-

>NO08G00680.1 ID=NO08G00680.1|Name=NO08G00680.1|organism=Nannochloropsis oceanica|type=CDS|length=585bp|location=Sequence derived from alignment at chr8:234414..237621- (Nannochloropsis oceanica)
ATGCTTGCCGAGACCTGGAGCGGAGCGCTGCCGCGAGAAATGGAGGGCCG
CGGCTTTCAGTACTTCTCCCAAAACCACAACTCAACCATCCTCCTCTTTT
CCCACGCGATAGGGGTTCGCCCGCACGCCAGGGGCACGCCCATTCGCGCA
CAAGCCATGGGTGGGGACTCCAAGGTGTCGGTGGTTGTGAAGAAGGAGGA
GAAGGAAGGGACGGAAATGATCCATCTTACAAAGCCAGGCCAAAAGTACA
CGACGCCCACCCCTGGTGTCCCTGAACGCATCTTTTACGAAAGCCTGTAC
GAACAAAACCCCGAGTCTTTTATGGCACAAGAATATTGCGTCCAATACGG
TATCCTGGAAGAAGACGAGGCCATGAAAATCTTCAAGAAGGTCCAAGCTC
GCAAAGCCAAGGGTGCCATTTACTCTCCTTCTCCCGTCAAGAAGTCCACA
GCAGCAGCAGCAGCAAAAAAAGGAGGAGTGGGGGGAGCGAAGAAAAAGAA
AAGTCGGTTGGATGATGATGCGCCGGTGGACACGGGCTTGATGGAGGGGG
GAGTGGAGGGGGTGGGGTCCATGAGCTTTGCTTAG

Synonyms

Publications