NO08G00430, NO08G00430 (gene) Nannochloropsis oceanica

Overview
NameNO08G00430
Unique NameNO08G00430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1527
Alignment locationchr8:175355..176881 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:175355..176881 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO08G00430 vs. NCBI_GenBank
Match: EWM26532.1 (hypothetical protein Naga_100141g6 [Nannochloropsis gaditana])

HSP 1 Score: 273.9 bits (699), Expect = 7.200e-70
Identity = 199/356 (55.90%), Postives = 227/356 (63.76%), Query Frame = 0 
Query:    1 MPGRRVAAAATFLVLSSASLVAAFQFQPSPFSVSTTAPSKR-----------DAVVMNSYQEQLARAKAEKAARQAGQGMAPQ-------------QXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALPVETNEAVATLLSLLGERLGSGQPLAPEKVRVFTQAAEAVIREARG------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGFEATGFDYQGEEDAWELGTRTLSGPAPGFKAASAYQPTGTGGFDEDFDDFEKYGLPQPVTRQKKSPFMETLKGTPFYVDIAAQPVSSDEYLKIIQNRVKEAQMKRRREEKHVGMESANFYMEELNRQK 327
            M  R +     F+V+  A +  AF + PSP      APS +             ++  SYQEQLARA+AEKAARQAG G  PQ                                            + LP ETNEAVATLL+LLGERLG+GQPLAPEKVRVFT AAEAVI+EARG                          XXXXXXXXXXXXXXXXXXXXXXXX  F A+GF+ Q E+  WE+G+RTL+GPAPGF+AASAYQP G GGFDE+ DDFE YGLPQPVTRQKKSPFMETLKGTPFYVDIA QPVSSDEYL+IIQ+R+K AQMKRR+E+ H G+ESAN YMEELNR+K
Sbjct:    1 MLNRGIVLQVAFVVVYFAWIGTAF-YVPSPTPNWWLAPSPKTRENPSACKSAHVILCASYQEQLARARAEKAARQAGGGAVPQPQYQPPSDAYRASYPSPAKQAQQAQTVSYSPQEEQQRNRPPHSGSPLPQETNEAVATLLNLLGERLGTGQPLAPEKVRVFTAAAEAVIKEARGIGYSVNAPVGQQQEAYQSQAQTFYSPXXXXXXXXXXXXXXXXXXXXXXXXXSFTASGFE-QDEDIPWEMGSRTLTGPAPGFRAASAYQPAGAGGFDEEGDDFETYGLPQPVTRQKKSPFMETLKGTPFYVDIAEQPVSSDEYLRIIQSRIKAAQMKRRQEQAHTGIESANHYMEELNRKK 354
The following BLAST results are available for this feature:
BLAST of NO08G00430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26532.17.200e-7055.90hypothetical protein Naga_100141g6 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009024NSK009024Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00430.1NO08G00430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581914gene_3371Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100141g6gene3999Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00430.1NO08G00430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00430 ID=NO08G00430|Name=NO08G00430|organism=Nannochloropsis oceanica|type=gene|length=1527bp
ACCTTAGCCTACAAAAACGATGCCGGGCAGAAGAGTAGCCGCTGCGGCGA
CCTTCCTGGTACTGTCCTCCGCGTCCTTGGTCGCAGCTTTCCAGTTCCAG
CCATCTCCCTTCTCCGTCTCCACGACGGCCCCCTCCAAACGCGACGCTGT
CGTGATGAATTCCTACCAAGAGCAACTTGCCCGGGCCAAGGCCGAAAAGG
CTGCCCGCCAAGCCGGTCAGGGCATGGCGCCTCAGCAGCAGCAGTACATG
GCGCACCCTGAAGCAAGCCATCCCCCTTCTCCTTCTCCCCCCCCTCCTGC
CCAGTACCAGCAGCAAGCACGACCGGCCGCCGCCTTGCCCGTTGAGACCA
ACGAGGCCGTCGCAACCTTACTCTCTTTGCTTGGTGAGCGTCTGGGCTCC
GGCCAGCCTCTGGCCCCGGAAAAAGTGCGGGTCTTCACTCAAGCGGCGGA
AGCAGTCATTCGAGAGGCACGTGGTGGTGGCGTGAGCGCAGCGCCCGTCC
AACAGTATCAACCGCAGCAGCCCCCGCAGCCGGCGCAGCAGTATGCATCG
CCGCCTCCACAGCAGTACCAGCAGGCGCAGTATGAGCAGCAGGCGCCGCA
GTCCTCAGGAGGATTTGAAGCCACGGGTTTTGATTACCAAGGCGAGGAGG
ACGCTTGGGAATTAGGGACACGGACGTTGTCCGGCCCCGCGCCGGGATTT
AAGGCCGCGTCAGCGTACCAGCCGACTGGCACTGGAGGTTTCGATGAGGA
TTTCGACGATTTCGAGAAGTACGGCTTGCCACAACCAGTGACGCGGCAGA
AGAAGAGTCCGTTCATGGAGACGCTCAAAGGTACTCCATTTTATGTGGAT
ATTGCGGCGCAGCCCGTCAGCTCGGACGAGTACTTGAAGATCATCCAGAA
CCGAGTGAAGGAGGCGCAGATGAAGCGAAGGCGAGAGGAGAAGCACGTGG
GGATGGAATCAGCAAATTTTTACATGGAAGAGCTGAACAGGCAGAAGCGA
GAGCGGTTGCGTGCGCAGGCGGAGGAGCAGTCCCAGCAATGGCAACAGGG
GGGGCAGCAGGGGCAGCAGGGGCAGCGGTAGAGAGTGTAGTAGGGTTGGT
GGGATATGGTAGGTCGGTGGGGTGAATTAAGTGAATCAAAAGGGGACCAA
ACTCGACGGATGGAATGTTGGGAGGAACATCGTTGGTATCTTGGGATGGA
AAGAGGGGAAGGGGGAAGGAGGAGGGGAGGGAAGGAAAAAGAAGAAAGAA
TCTTCCTCCACCATTTTTTCCAGTATGTCATGTGGGGGGTTTGGGGCCAC
CCAACCGTTCCGATCTTTTGTCTGAATGGCCGTTCGTTCCCGTAGTTATT
GCCATCGCGAGCCCGGAAACCTTTTCCGAGCACGGGTCCACATGGCATAA
TCGGTATGGGGCCTCCCTGCTCCCTTTTTCCCCATGTCTCTGCCTCCACT
CACACTCACCCTGTTCCGAGCCACTCACTTGTCCTCGCCCTCGCCCTCCG
CCTCCTTTCTCTCGTCAATATAATACA
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protein sequence of NO08G00430.1

>NO08G00430.1-protein ID=NO08G00430.1-protein|Name=NO08G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MPGRRVAAAATFLVLSSASLVAAFQFQPSPFSVSTTAPSKRDAVVMNSYQ
EQLARAKAEKAARQAGQGMAPQQQQYMAHPEASHPPSPSPPPPAQYQQQA
RPAAALPVETNEAVATLLSLLGERLGSGQPLAPEKVRVFTQAAEAVIREA
RGGGVSAAPVQQYQPQQPPQPAQQYASPPPQQYQQAQYEQQAPQSSGGFE
ATGFDYQGEEDAWELGTRTLSGPAPGFKAASAYQPTGTGGFDEDFDDFEK
YGLPQPVTRQKKSPFMETLKGTPFYVDIAAQPVSSDEYLKIIQNRVKEAQ
MKRRREEKHVGMESANFYMEELNRQKRERLRAQAEEQSQQWQQGGQQGQQ
GQR*
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Synonyms
Publications