NO08G00430.1, NO08G00430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00430.1
Unique NameNO08G00430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1527
Alignment locationchr8:175355..176881 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:175355..176881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G00430.1 vs.
Match: EWM26532.1 (hypothetical protein Naga_100141g6 [Nannochloropsis gaditana])

HSP 1 Score: 323.2 bits (827), Expect = 1.000e-84
Identity = 219/384 (57.03%), Postives = 258/384 (67.19%), Query Frame = 0 
Query:    1 MPGRRVAAAATFLVLSSASLVAAFQFQPSPFSVSTTAPSKRD-----------AVVMNSYQEQLARAKAEKAARQAGQGMAPQQQQYMAHPEASHPPSPSPPPPAQY-----------QQQARP---AAALPVETNEAVATLLSLLGERLGSGQPLAPEKVRVFTQAAEAVIREARGGGVSA-APVQQ------------YQPQQPPQPAQQYASPPPQQYQQAQYEQQAPQSSGGFEATGFDYQGEEDAWELGTRTLSGPAPGFKAASAYQPTGTGGFDEDFDDFEKYGLPQPVTRQKKSPFMETLKGTPFYVDIAAQPVSSDEYLKIIQNRVKEAQMKRRREEKHVGMESANFYMEELNRQKRERLRAQAEEQSQQWQQGGQ 347
            M  R +     F+V+  A +  AF + PSP      APS +             ++  SYQEQLARA+AEKAARQAG G  PQ Q Y    +A     PSP   AQ            QQ+ RP    + LP ETNEAVATLL+LLGERLG+GQPLAPEKVRVFT AAEAVI+EARG G S  APV Q            Y PQQP QP Q   + P  Q    +++ QAP     F A+GF+ Q E+  WE+G+RTL+GPAPGF+AASAYQP G GGFDE+ DDFE YGLPQPVTRQKKSPFMETLKGTPFYVDIA QPVSSDEYL+IIQ+R+K AQMKRR+E+ H G+ESAN YMEELNR+K+ERLR +A EQ++QWQ+GGQ
Sbjct:    1 MLNRGIVLQVAFVVVYFAWIGTAF-YVPSPTPNWWLAPSPKTRENPSACKSAHVILCASYQEQLARARAEKAARQAGGGAVPQPQ-YQPPSDAYRASYPSPAKQAQQAQTVSYSPQEEQQRNRPPHSGSPLPQETNEAVATLLNLLGERLGTGQPLAPEKVRVFTAAAEAVIKEARGIGYSVNAPVGQQQEAYQSQAQTFYSPQQPRQPEQ---TQPHHQQDYPRHQSQAPS----FTASGFE-QDEDIPWEMGSRTLTGPAPGFRAASAYQPAGAGGFDEEGDDFETYGLPQPVTRQKKSPFMETLKGTPFYVDIAEQPVSSDEYLRIIQSRIKAAQMKRRQEQAHTGIESANHYMEELNRKKQERLRLEA-EQARQWQEGGQ 373
The following BLAST results are available for this feature:
BLAST of NO08G00430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26532.11.000e-8457.03hypothetical protein Naga_100141g6 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00430NO08G00430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00430.1NO08G00430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00430.1.cds1NO08G00430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00430.1 ID=NO08G00430.1|Name=NO08G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1527bp
ACCTTAGCCTACAAAAACGATGCCGGGCAGAAGAGTAGCCGCTGCGGCGA
CCTTCCTGGTACTGTCCTCCGCGTCCTTGGTCGCAGCTTTCCAGTTCCAG
CCATCTCCCTTCTCCGTCTCCACGACGGCCCCCTCCAAACGCGACGCTGT
CGTGATGAATTCCTACCAAGAGCAACTTGCCCGGGCCAAGGCCGAAAAGG
CTGCCCGCCAAGCCGGTCAGGGCATGGCGCCTCAGCAGCAGCAGTACATG
GCGCACCCTGAAGCAAGCCATCCCCCTTCTCCTTCTCCCCCCCCTCCTGC
CCAGTACCAGCAGCAAGCACGACCGGCCGCCGCCTTGCCCGTTGAGACCA
ACGAGGCCGTCGCAACCTTACTCTCTTTGCTTGGTGAGCGTCTGGGCTCC
GGCCAGCCTCTGGCCCCGGAAAAAGTGCGGGTCTTCACTCAAGCGGCGGA
AGCAGTCATTCGAGAGGCACGTGGTGGTGGCGTGAGCGCAGCGCCCGTCC
AACAGTATCAACCGCAGCAGCCCCCGCAGCCGGCGCAGCAGTATGCATCG
CCGCCTCCACAGCAGTACCAGCAGGCGCAGTATGAGCAGCAGGCGCCGCA
GTCCTCAGGAGGATTTGAAGCCACGGGTTTTGATTACCAAGGCGAGGAGG
ACGCTTGGGAATTAGGGACACGGACGTTGTCCGGCCCCGCGCCGGGATTT
AAGGCCGCGTCAGCGTACCAGCCGACTGGCACTGGAGGTTTCGATGAGGA
TTTCGACGATTTCGAGAAGTACGGCTTGCCACAACCAGTGACGCGGCAGA
AGAAGAGTCCGTTCATGGAGACGCTCAAAGGTACTCCATTTTATGTGGAT
ATTGCGGCGCAGCCCGTCAGCTCGGACGAGTACTTGAAGATCATCCAGAA
CCGAGTGAAGGAGGCGCAGATGAAGCGAAGGCGAGAGGAGAAGCACGTGG
GGATGGAATCAGCAAATTTTTACATGGAAGAGCTGAACAGGCAGAAGCGA
GAGCGGTTGCGTGCGCAGGCGGAGGAGCAGTCCCAGCAATGGCAACAGGG
GGGGCAGCAGGGGCAGCAGGGGCAGCGGTAGAGAGTGTAGTAGGGTTGGT
GGGATATGGTAGGTCGGTGGGGTGAATTAAGTGAATCAAAAGGGGACCAA
ACTCGACGGATGGAATGTTGGGAGGAACATCGTTGGTATCTTGGGATGGA
AAGAGGGGAAGGGGGAAGGAGGAGGGGAGGGAAGGAAAAAGAAGAAAGAA
TCTTCCTCCACCATTTTTTCCAGTATGTCATGTGGGGGGTTTGGGGCCAC
CCAACCGTTCCGATCTTTTGTCTGAATGGCCGTTCGTTCCCGTAGTTATT
GCCATCGCGAGCCCGGAAACCTTTTCCGAGCACGGGTCCACATGGCATAA
TCGGTATGGGGCCTCCCTGCTCCCTTTTTCCCCATGTCTCTGCCTCCACT
CACACTCACCCTGTTCCGAGCCACTCACTTGTCCTCGCCCTCGCCCTCCG
CCTCCTTTCTCTCGTCAATATAATACA
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protein sequence of NO08G00430.1

>NO08G00430.1-protein ID=NO08G00430.1-protein|Name=NO08G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MPGRRVAAAATFLVLSSASLVAAFQFQPSPFSVSTTAPSKRDAVVMNSYQ
EQLARAKAEKAARQAGQGMAPQQQQYMAHPEASHPPSPSPPPPAQYQQQA
RPAAALPVETNEAVATLLSLLGERLGSGQPLAPEKVRVFTQAAEAVIREA
RGGGVSAAPVQQYQPQQPPQPAQQYASPPPQQYQQAQYEQQAPQSSGGFE
ATGFDYQGEEDAWELGTRTLSGPAPGFKAASAYQPTGTGGFDEDFDDFEK
YGLPQPVTRQKKSPFMETLKGTPFYVDIAAQPVSSDEYLKIIQNRVKEAQ
MKRRREEKHVGMESANFYMEELNRQKRERLRAQAEEQSQQWQQGGQQGQQ
GQR*
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mRNA from alignment at chr8:175355..176881-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00430.1 ID=NO08G00430.1|Name=NO08G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1527bp|location=Sequence derived from alignment at chr8:175355..176881- (Nannochloropsis oceanica)
ACCTTAGCCTACAAAAACGATGCCGGGCAGAAGAGTAGCCGCTGCGGCGA
CCTTCCTGGTACTGTCCTCCGCGTCCTTGGTCGCAGCTTTCCAGTTCCAG
CCATCTCCCTTCTCCGTCTCCACGACGGCCCCCTCCAAACGCGACGCTGT
CGTGATGAATTCCTACCAAGAGCAACTTGCCCGGGCCAAGGCCGAAAAGG
CTGCCCGCCAAGCCGGTCAGGGCATGGCGCCTCAGCAGCAGCAGTACATG
GCGCACCCTGAAGCAAGCCATCCCCCTTCTCCTTCTCCCCCCCCTCCTGC
CCAGTACCAGCAGCAAGCACGACCGGCCGCCGCCTTGCCCGTTGAGACCA
ACGAGGCCGTCGCAACCTTACTCTCTTTGCTTGGTGAGCGTCTGGGCTCC
GGCCAGCCTCTGGCCCCGGAAAAAGTGCGGGTCTTCACTCAAGCGGCGGA
AGCAGTCATTCGAGAGGCACGTGGTGGTGGCGTGAGCGCAGCGCCCGTCC
AACAGTATCAACCGCAGCAGCCCCCGCAGCCGGCGCAGCAGTATGCATCG
CCGCCTCCACAGCAGTACCAGCAGGCGCAGTATGAGCAGCAGGCGCCGCA
GTCCTCAGGAGGATTTGAAGCCACGGGTTTTGATTACCAAGGCGAGGAGG
ACGCTTGGGAATTAGGGACACGGACGTTGTCCGGCCCCGCGCCGGGATTT
AAGGCCGCGTCAGCGTACCAGCCGACTGGCACTGGAGGTTTCGATGAGGA
TTTCGACGATTTCGAGAAGTACGGCTTGCCACAACCAGTGACGCGGCAGA
AGAAGAGTCCGTTCATGGAGACGCTCAAAGGTACTCCATTTTATGTGGAT
ATTGCGGCGCAGCCCGTCAGCTCGGACGAGTACTTGAAGATCATCCAGAA
CCGAGTGAAGGAGGCGCAGATGAAGCGAAGGCGAGAGGAGAAGCACGTGG
GGATGGAATCAGCAAATTTTTACATGGAAGAGCTGAACAGGCAGAAGCGA
GAGCGGTTGCGTGCGCAGGCGGAGGAGCAGTCCCAGCAATGGCAACAGGG
GGGGCAGCAGGGGCAGCAGGGGCAGCGGTAGAGAGTGTAGTAGGGTTGGT
GGGATATGGTAGGTCGGTGGGGTGAATTAAGTGAATCAAAAGGGGACCAA
ACTCGACGGATGGAATGTTGGGAGGAACATCGTTGGTATCTTGGGATGGA
AAGAGGGGAAGGGGGAAGGAGGAGGGGAGGGAAGGAAAAAGAAGAAAGAA
TCTTCCTCCACCATTTTTTCCAGTATGTCATGTGGGGGGTTTGGGGCCAC
CCAACCGTTCCGATCTTTTGTCTGAATGGCCGTTCGTTCCCGTAGTTATT
GCCATCGCGAGCCCGGAAACCTTTTCCGAGCACGGGTCCACATGGCATAA
TCGGTATGGGGCCTCCCTGCTCCCTTTTTCCCCATGTCTCTGCCTCCACT
CACACTCACCCTGTTCCGAGCCACTCACTTGTCCTCGCCCTCGCCCTCCG
CCTCCTTTCTCTCGTCAATATAATACA
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Coding sequence (CDS) from alignment at chr8:175355..176881-

>NO08G00430.1 ID=NO08G00430.1|Name=NO08G00430.1|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at chr8:175355..176881- (Nannochloropsis oceanica)
ATGCCGGGCAGAAGAGTAGCCGCTGCGGCGACCTTCCTGGTACTGTCCTC
CGCGTCCTTGGTCGCAGCTTTCCAGTTCCAGCCATCTCCCTTCTCCGTCT
CCACGACGGCCCCCTCCAAACGCGACGCTGTCGTGATGAATTCCTACCAA
GAGCAACTTGCCCGGGCCAAGGCCGAAAAGGCTGCCCGCCAAGCCGGTCA
GGGCATGGCGCCTCAGCAGCAGCAGTACATGGCGCACCCTGAAGCAAGCC
ATCCCCCTTCTCCTTCTCCCCCCCCTCCTGCCCAGTACCAGCAGCAAGCA
CGACCGGCCGCCGCCTTGCCCGTTGAGACCAACGAGGCCGTCGCAACCTT
ACTCTCTTTGCTTGGTGAGCGTCTGGGCTCCGGCCAGCCTCTGGCCCCGG
AAAAAGTGCGGGTCTTCACTCAAGCGGCGGAAGCAGTCATTCGAGAGGCA
CGTGGTGGTGGCGTGAGCGCAGCGCCCGTCCAACAGTATCAACCGCAGCA
GCCCCCGCAGCCGGCGCAGCAGTATGCATCGCCGCCTCCACAGCAGTACC
AGCAGGCGCAGTATGAGCAGCAGGCGCCGCAGTCCTCAGGAGGATTTGAA
GCCACGGGTTTTGATTACCAAGGCGAGGAGGACGCTTGGGAATTAGGGAC
ACGGACGTTGTCCGGCCCCGCGCCGGGATTTAAGGCCGCGTCAGCGTACC
AGCCGACTGGCACTGGAGGTTTCGATGAGGATTTCGACGATTTCGAGAAG
TACGGCTTGCCACAACCAGTGACGCGGCAGAAGAAGAGTCCGTTCATGGA
GACGCTCAAAGGTACTCCATTTTATGTGGATATTGCGGCGCAGCCCGTCA
GCTCGGACGAGTACTTGAAGATCATCCAGAACCGAGTGAAGGAGGCGCAG
ATGAAGCGAAGGCGAGAGGAGAAGCACGTGGGGATGGAATCAGCAAATTT
TTACATGGAAGAGCTGAACAGGCAGAAGCGAGAGCGGTTGCGTGCGCAGG
CGGAGGAGCAGTCCCAGCAATGGCAACAGGGGGGGCAGCAGGGGCAGCAG
GGGCAGCGGTAG
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Synonyms
Publications